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Schmitt, Sylvain ; Raevel, Valérie ; Réjou-Méchain, Maxime ; Ayyappan, Narayanan ; Balachandran, Natesan ; Barathan, Narayanan ; Rajashekar, Gopalakrishnan ; Munoz, François |
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Canopy and understorey tree guilds respond differently to the environment in an Indian rain forest |
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Journal Article |
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2021 |
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Journal of Végétation Science |
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32 |
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5 |
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e13075 |
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Questions Changes in the functional composition of tree communities along resource availability gradients have received attention, but it is unclear whether understorey and canopy guilds respond similarly to different light, biomechanical, and hydraulic constraints. Location An anthropically undisturbed, old-growth wet evergreen dipterocarp forest plot located in Karnataka State, India. Methods We measured leaf and wood traits of 89 tree species representing 99% of all individuals in a 10-ha permanent plot with varying topographic and canopy conditions inferred from Light Detection And Ranging (LiDAR) data. We assigned tree species to guilds of canopy and understorey species and assessed the variation of the guild-weighted means of functional-trait values with canopy height and topography. Results The functional-trait space did not differ between canopy and understorey tree species. However, environmental filtering led to significantly different functional composition of canopy and understorey guild assemblages. Furthermore, they responded differently along environmental gradients related to water, nutrients, light, and wind exposure. For example, the canopy guild responded to wind exposure while the understorey guild did not. Conclusions The pools of understorey and canopy species are functionally similar. However, fine-scale environmental heterogeneity impacts differently on these two guilds, generating striking differences in functional composition between understorey and canopy guild assemblages. Accounting for vertical guilds improves our understanding of forest communities' assembly processes. |
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International Association for Vegetation Science |
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EcoFoG @ webmaster @ |
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1038 |
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Schmitt, Sylvain ; Tysklind, Niklas ; Hérault, Bruno ; Heuertz, Myriam |
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Topography drives microgeographic adaptations of closely related species in two tropical tree species complexes |
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2021 |
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Molecular Ecology |
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30 |
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20 |
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5080-5093 |
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Closely related tree species that grow in sympatry are abundant in rainforests. However, little is known of the ecoevolutionary processes that govern their niches and local coexistence. We assessed genetic species delimitation in closely related sympatric species belonging to two Neotropical tree species complexes and investigated their genomic adaptation to a fine-scale topographic gradient with associated edaphic and hydrologic features. Combining LiDAR-derived topography, tree inventories, and single nucleotide polymorphisms (SNPs) from gene capture experiments, we explored genome-wide population genetic structure, covariation of environmental variables, and genotype-environment association to assess microgeographic adaptations to topography within the species complexes Symphonia (Clusiaceae), and Eschweilera (Lecythidaceae) with three species per complex and 385 and 257 individuals genotyped, respectively. Within species complexes, closely related tree species had different realized optima for topographic niches defined through the topographic wetness index or the relative elevation, and species displayed genetic signatures of adaptations to these niches. Symphonia species were genetically differentiated along water and nutrient distribution particularly in genes responding to water deprivation, whereas Eschweilera species were genetically differentiated according to soil chemistry. Our results suggest that varied topography represents a powerful driver of processes modulating tropical forest biodiversity with differential adaptations that stabilize local coexistence of closely related tree species. |
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Wiley |
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EcoFoG @ webmaster @ |
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1045 |
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Schwalm, C.R.; Williams, C.A.; Schaefer, K.; Arneth, A.; Bonal, D.; Buchmann, N.; Chen, J.Q.; Law, B.E.; Lindroth, A.; Luyssaert, S.; Reichstein, M.; Richardson, A.D. |
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Title |
Assimilation exceeds respiration sensitivity to drought: A FLUXNET synthesis |
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2010 |
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Global Change Biology |
Abbreviated Journal |
Glob. Change Biol. |
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16 |
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2 |
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657-670 |
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biome; carbon cycling; drought; eddy covariance; evaporative fraction; FLUXNET; synthesis |
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The intensification of the hydrological cycle, with an observed and modeled increase in drought incidence and severity, underscores the need to quantify drought effects on carbon cycling and the terrestrial sink. FLUXNET, a global network of eddy covariance towers, provides dense data streams of meteorological data, and through flux partitioning and gap filling algorithms, estimates of net ecosystem productivity (F-NEP), gross ecosystem productivity (P), and ecosystem respiration (R). We analyzed the functional relationship of these three carbon fluxes relative to evaporative fraction (EF), an index of drought and site water status, using monthly data records from 238 micrometeorological tower sites distributed globally across 11 biomes. The analysis was based on relative anomalies of both EF and carbon fluxes and focused on drought episodes by biome and climatic season. Globally P was approximate to 50% more sensitive to a drought event than R. Network-wide drought-induced decreases in carbon flux averaged -16.6 and -9.3 g C m-2 month-1 for P and R, i.e., drought events induced a net decline in the terrestrial sink. However, in evergreen forests and wetlands drought was coincident with an increase in P or R during parts of the growing season. The most robust relationships between carbon flux and EF occurred during climatic spring for F-NEP and in climatic summer for P and R. Upscaling flux sensitivities to a global map showed that spatial patterns for all three carbon fluxes were linked to the distribution of croplands. Agricultural areas exhibited the highest sensitivity whereas the tropical region had minimal sensitivity to drought. Combining gridded flux sensitivities with their uncertainties and the spatial grid of FLUXNET revealed that a more robust quantification of carbon flux response to drought requires additional towers in all biomes of Africa and Asia as well as in the cropland, shrubland, savannah, and wetland biomes globally. |
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[Schwalm, Christopher R.; Williams, Christopher A.] Clark Univ, Grad Sch Geog, Worcester, MA 01610 USA, Email: cschwalm@clarku.edu |
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WILEY-BLACKWELL PUBLISHING, INC |
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1354-1013 |
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ISI:000274419400014 |
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EcoFoG @ eric.marcon @ |
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69 |
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Scotti, I. |
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Adaptive potential in forest tree populations: what is it, and how can we measure it? |
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2010 |
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Annals of Forest Science |
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Ann. For. Sci. |
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67 |
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8 |
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801 |
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INRA, Unite Mixte Rech Ecol Forets Guyane EcoFoG, F-97387 Kourou, France, Email: ivan.scotti@ecofog.gf |
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EDP SCIENCES S A |
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1286-4560 |
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ISI:000283594400002 |
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EcoFoG @ eric.marcon @ |
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21 |
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Scotti, I.; Burelli, A.; Cattonaro, F.; Chagne, D.; Fuller, J.; Hedley, P.E.; Jansson, G.; Lalanne, C.; Madur, D.; Neale, D.; Plomion, C.; Powell, W.; Troggio, M.; Morgante, M. |
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Analysis of the distribution of marker classes in a genetic linkage map: a case study in Norway spruce (Picea abies karst) |
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2005 |
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Tree Genetics & Genomes |
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Tree Genet. Genomes |
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1 |
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3 |
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93-102 |
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Picea abies; conifers; linkage map; genome structure; molecular markers; autocorrelation |
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In order to analyze the large-scale structure of the genome of Norway spruce (Picea abies Karst.), a pseudo-testcross genetic linkage map was built using markers of six different types, belonging to the low (amplified fragment length polymorphisms, simple sequence repeats) or high (sequence-specific amplified polymorphisms, inter-retrotransposon amplified polymorphisms) copy-number fraction of the genome, and including expressed region-derived markers (expressed sequence tag polymorphisms). Twenty seven and 23 linkage groups of at least four markers were obtained for the female and the male parent maps, respectively. A subset of these linkage groups coalesced into 13 bi-parental linkage groups through markers shared between the two maps. This map was used to investigate the frequency of each marker type over chromosomes and the distribution of marker types relative to each other, using autocorrelation techniques. Our results show that, while the composition of chromosomes is homogeneous, low- and high-copy-number markers tend to occupy separate regions of the linkage groups, and that expressed sequences are preferentially associated with microsatellites and separated from retrotranspo sons. These results indicate that the spatial structure of Norway spruce chromosomes is not homogeneous. |
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INRA, UMR ECOFOG, Kourou 97387, French Guiana, Email: ivan.scotti@kourou.cirad.fr |
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SPRINGER HEIDELBERG |
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1614-2942 |
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ISI:000244896200002 |
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EcoFoG @ eric.marcon @ |
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167 |
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Scotti, I.; Calvo-Vialettes, L.; Scotti-Saintagne, C.; Citterio, M.; Degen, B.; Bonal, D. |
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Genetic variation for growth, morphological, and physiological traits in a wild population of the Neotropical shade tolerant rainforest tree Sextonia rubra (Mez) van der Werff (Lauraceae) |
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Journal Article |
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2010 |
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Tree Genetics & Genomes |
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Tree Genet. Genomes |
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6 |
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2 |
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319-329 |
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Ecophysiological traits; Heritability; Guiana shield; Amazon; Ecological genetics |
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Quantitative genetic diversity is a fundamental component of the interaction between natural populations and their environment. In breeding programmes, quantitative genetic studies on tropical trees have so far focused on fast-growing, light-demanding species, but no information exists on shade-tolerant, slow-growing species. For this study, 27 3-year-old open-pollinated families of the Neotropical shade-tolerant rainforest tree Sextonia rubra were measured in semicontrolled conditions for 20 morphological, growth, and photosynthesis traits; the effect of genetic relatedness, habitat of provenance, and mother tree status on seedling traits was analysed. Nine traits displayed significant genetic effects, while mother tree status and habitat effects were not significant (P > 0.05) for an y trait. Estimated heritability varied between 0.14 and 0.28, with growth-related traits having the highest values. Additive genetic variation correlated positively with nonheritable variation, suggesting that ecological-evolutionary factors increasing or decreasing additive genetic variance may also affect nonheritable variation in the same direction. Our results suggest that quantitative genetic variability should be taken into account in ecological studies on, and in the management of, natural tropical rainforests; further research is needed to investigate genetic x environment interactions, in particular from the point of view of the genetic response of shade-tolerant plant species to variations in light availability. |
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[Scotti, Ivan; Scotti-Saintagne, Caroline; Bonal, Damien] INRA, Unite Mixte Rech Ecol Forets Guyane, Kourou 97387, French Guiana, Email: ivan.scotti@ecofog.gf |
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SPRINGER HEIDELBERG |
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1614-2942 |
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ISI:000274112600015 |
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EcoFoG @ eric.marcon @ |
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68 |
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Scotti, I.; Delph, L.F. |
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Selective trade-offs and sex-chromosome evolution in Silene latifolia |
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Journal Article |
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2006 |
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Evolution |
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Evolution |
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60 |
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9 |
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1793-1800 |
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antagonistic genes; linkage map; quantitative trait loci; sex-specific expression; Y chromosome |
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Alleles of sexually antagonistic genes (i.e., genes with alleles affecting fitness in opposite directions in the two sexes) can avoid expression in the sex to which they are detrimental via two processes: they are subsumed into the nonrecombining, sex-determining portion of the sex chromosomes or they evolve sex-limited expression. The former is considered more likely and leads to Y-chromosome degeneration. We mapped quantitative trait loci of major effect for sexually dimorphic traits of Silene latifolia to the recombining portions of the sex chromosomes and found them to exhibit sex-specific expression, with the Y chromosome in males controlling a relatively larger proportion of genetic variance than the X in females and the average autosome. Both reproductive and ecophysiological traits map to the recombining region of the sex chromosomes. We argue that genetic correlations among traits maintain recombination and polymorphism for these genes because of balancing selection in males, whereas sex-limited expression represses detrimental alleles in females. Our data suggest that the Y chromosome of S. latifolia plays a major role in the control of key metabolic activities beyond reproductive functions. |
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Indiana Univ, Dept Biol, Bloomington, IN 47405 USA, Email: ivan.scotti@kourou.cirad.fr |
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SOC STUDY EVOLUTION |
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0014-3820 |
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ISI:000241226800005 |
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EcoFoG @ eric.marcon @ |
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174 |
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Scotti, I.; González-Martínez, S.C.; Budde, K.B.; Lalague, H. |
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Fifty years of genetic studies: what to make of the large amounts of variation found within populations? |
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Journal Article |
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2016 |
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Annals of Forest Science |
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Annals of Forest Science |
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73 |
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1 |
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69-75 |
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Intra-specific variation; Microgeography; Natural selection; Population genomics |
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INRA, UMR745 Ecologie des Forêts de Guyane, Campus Agronomique, Kourou, French Guiana |
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Export Date: 7 March 2016 |
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EcoFoG @ webmaster @ |
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667 |
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Scotti, I.; Gugerli, F.; Pastorelli, R.; Sebastiani, F.; Vendramin, G.G. |
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Maternally and paternally inherited molecular markers elucidate population patterns and inferred dispersal processes on a small scale within a subalpine stand of Norway spruce (Picea abies [L.] Karst.) |
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Journal Article |
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2008 |
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Forest Ecology and Management |
Abbreviated Journal |
For. Ecol. Manage. |
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255 |
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11 |
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3806-3812 |
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chloroplast microsatellites; mitochondrial minisatellites; pollen/seed dispersal; demography; spatial autocorrelation |
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The within-population spatial structure of genetic diversity is shaped by demographic processes, including historical accidents such as forest perturbations. Information drawn from the analysis of the spatial distribution of genetic diversity is therefore inherently linked to demographic-historical processes that ultimately determine the fate of populations. All adult trees and saplings in a 1.4-ha plot within a mixed Norway spruce (Picea abies [L.] Karst) stand were characterised by means of chloroplast (paternally inherited) markers, and a large sub-sample of these were genotyped at mitochondrial (maternally inherited) molecular markers. These data were used to analyse the spatial distribution of genetic variation and to compare the patterns corresponding to the two marker types. The plot presented non-homogeneous local stem density in the younger cohorts, and the indirect effect of this source of variation on the spatial genetic structure was investigated. Results suggest that (i) spatially limited seed dispersal induced patchiness in genotype distribution, while pollen flow had a homogenising effect; (ii) deviations from random spatial structure were stronger in the demographically most stable portions of the stand, while they were weaker where sudden bursts of regeneration occurred; (iii) spatially overlapping adult and sapling cohorts displayed the same spatial genetic structure (stronger on stable areas, weaker in portions of the stand undergoing events of intense regeneration), which was substantiated by the influence of local demographic processes. Regeneration dynamics as modulated by demography thus influences the distribution of genetic diversity within the stand both in the younger life stages and in the adult population. (C) 2008 Elsevier B.V. All rights reserved. |
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[Scotti, I.] INRA, UMR 0745, ECOFOG, F-97387 Kourou, France, Email: ivan.scotti@kourou.cirad.fr |
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ELSEVIER SCIENCE BV |
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0378-1127 |
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ISI:000257019100019 |
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EcoFoG @ eric.marcon @ |
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137 |
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Scotti, I.; Montaigne, W.; Cseke, K.; Traissac, S. |
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RaBoT: A rarefaction-by-bootstrap method to compare genome-wide levels of genetic diversity |
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Journal Article |
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2013 |
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Annals of Forest Science |
Abbreviated Journal |
Ann. Forest Sci. |
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70 |
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6 |
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631-635 |
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Diversity comparison; Genome scan; Genome-level diversity; Population genetics; Statistical testing |
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Context: No efficient method is available to compare multi-locus estimates of diversity while taking into account inter-locus and inter-population stochastic variance. The advent of genome scan approaches makes the development of such tests absolutely necessary. Aims: We developed a method to compare genome-wide diversity estimates while taking into account – and factoring out – variation in census size and making use of inter-locus variance to assess significance of differences in diversity levels. Methods: An approach based on rarefaction with bootstrap re-sampling (RaBoT) was implemented into a test of multi-locus comparison of diversity coded in R. The properties of the test were studied by applying it to simulated populations with varying diversity levels and varying differences in diversity levels. The test was then applied to empirical data from disturbed and undisturbed populations of Virola michelii (Myristicaceae) genotyped at 693 amplified fragment length polymorphism (AFLP) markers. Results: RaBoT was found to be rather conservative, with large numbers of false negatives when the diversity in the compared populations was similar, and false positives mostly associated to comparisons of populations with extremely high levels of diversity. When applied to empirical data, RaBoT detected higher genetic diversity in a post-disturbance than in an undisturbed population and lower genetic diversity in a seedling than in the corresponding adult population, but it also revealed differences in diversity between subgroups within the disturbed and undisturbed plots. Conclusion: RaBoT is a sensitive method to compare multi-locus levels of diversity that can be applied both at the genotype level for dominant markers (e.g. AFLP) and at the allele level for biallelic codominant markers (e.g. single-nucleotide polymorphisms). © 2013 INRA and Springer-Verlag France. |
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Unité Mixte de Recherche ecologie des Forêts de Guyane (EcoFoG), AgroParisTech, Kourou, French Guiana |
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12864560 (Issn) |
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Export Date: 30 August 2013; Source: Scopus; Coden: Afosf; doi: 10.1007/s13595-013-0302-z; Language of Original Document: English; Correspondence Address: Scotti, I.; Unité Mixte de Recherche ecologie des Forêts de Guyane (EcoFoG), INRA, Institut National de la Recherche Agronomique, BP 709, 97387 Kourou cedex, French Guiana; email: ivan.Scotti@ecofog.gf |
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