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Author Dejean, A.; Ryder, S.; Bolton, B.; Compin, A.; Leponce, M.; Azémar, F.; Céréghino, R.; Orivel, J.; Corbara, B. url  openurl
  Title How territoriality and host-tree taxa determine the structure of ant mosaics Type Journal Article
  Year 2015 Publication The Science of Nature Abbreviated Journal Sci Nat  
  Volume 102 Issue 33 Pages 1-9  
  Keywords Africa; Arboreal ants; Distribution; Host-tree selection; Rainforest canopies  
  Abstract Very large colonies of territorially dominant arboreal ants (TDAAs), whose territories are distributed in a mosaic pattern in the canopies of many tropical rainforests and tree crop plantations, have a generally positive impact on their host trees. We studied the canopy of an old Gabonese rainforest (ca 4.25 ha sampled, corresponding to 206 Blarge trees) at a stage just preceding forest maturity (the Caesalpinioideae dominated; the Burseraceae were abundant). The tree crowns sheltered colonies from 13 TDAAs plus a codominant species out of the 25 ant species recorded. By mapping the TDAAs' territories and using a null model cooccurrence analysis, we confirmed the existence of an ant mosaic. Thanks to a large sampling set and the use of the self-organizing map algorithm (SOM), we show that the distribution of the trees influences the structure of the ant mosaic, suggesting that each tree taxon attracts certain TDAA species rather than others. The SOMalso improved our knowledge of the TDAAs' ecological niches, showing that these ant species are ecologically distinct from each other based on their relationships with their supporting trees. Therefore, TDAAs should not systematically be placed in the same functional group even when they belong to the same genus.We conclude by reiterating that, in addition to the role played by TDAAs' territorial competition, host trees contribute to structuring ant mosaics through multiple factors, including host-plant selection by TDAAs, the age of the trees, the presence of extrafloral nectaries, and the taxa of the associated hemipterans. © Springer-Verlag Berlin Heidelberg 2015.  
  Address Université Clermont Auvergne, Université Blaise Pascal (LMGE), Clermont-Ferrand, France  
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  Notes Export Date: 16 October 2015 Approved no  
  Call Number EcoFoG @ webmaster @ Serial 632  
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Author Marcon, E.; Herault, B. pdf  url
openurl 
  Title entropart: An R package to measure and partition diversity Type Journal Article
  Year 2015 Publication Journal of Statistical Software Abbreviated Journal Journal of Statistical Software  
  Volume 67 Issue 8 Pages 1-26  
  Keywords Biodiversity; Entropy; Partitioning  
  Abstract entropart is a package for R designed to estimate diversity based on HCDT entropy or similarity-based entropy. It allows calculating species-neutral, phylogenetic and functional entropy and diversity, partitioning them and correcting them for estimation bias. © 2015, American Statistical Association. All rights reserved.  
  Address Cirad, Campus agronomique, BP 316, Kourou, French Guiana  
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  Notes Export Date: 22 October 2015 Approved no  
  Call Number EcoFoG @ webmaster @ Serial 633  
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Author Honorio Coronado, E.N.; Dexter, K.G.; Pennington, R.T.; Chave, J.; Lewis, S.L.; Alexiades, M.N.; Alvarez, E.; Alves de Oliveira, A.; Amaral, I.L.; Araujo-Murakami, A.; Arets, E.J.M.M.; Aymard, G.A.; Baraloto, C.; Bonal, D.; Brienen, R.; Cerón, C.; Cornejo Valverde, F.; Di Fiore, A.; Farfan-Rios, W.; Feldpausch, T.R.; Higuchi, N.; Huamantupa-Chuquimaco, I.; Laurance, S.G.; Laurance, W.F.; López-Gonzalez, G.; Marimon, B.S.; Marimon-Junior, B.H.; Monteagudo Mendoza, A.; Neill, D.; Palacios Cuenca, W.; Peñuela Mora, M.C.; Pitman, N.C.A.; Prieto, A.; Quesada, C.A.; Ramirez Angulo, H.; Rudas, A.; Ruschel, A.R.; Salinas Revilla, N.; Salomão, R.P.; Segalin de Andrade, A.; Silman, M.R.; Spironello, W.; ter Steege, H.; Terborgh, J.; Toledo, M.; Valenzuela Gamarra, L.; Vieira, I.C.G.; Vilanova Torre, E.; Vos, V.; Phillips, O.L. url  openurl
  Title Phylogenetic diversity of Amazonian tree communities Type Journal Article
  Year 2015 Publication Diversity and Distributions Abbreviated Journal Diversity and Distributions  
  Volume 21 Issue 11 Pages 1295-1307  
  Keywords Amazon basin; Eudicots; Magnoliids; Monocots; Phylogenetic diversity; Species richness  
  Abstract Aim: To examine variation in the phylogenetic diversity (PD) of tree communities across geographical and environmental gradients in Amazonia. Location: Two hundred and eighty-three c. 1 ha forest inventory plots from across Amazonia. Methods: We evaluated PD as the total phylogenetic branch length across species in each plot (PDss), the mean pairwise phylogenetic distance between species (MPD), the mean nearest taxon distance (MNTD) and their equivalents standardized for species richness (ses.PDss, ses.MPD, ses.MNTD). We compared PD of tree communities growing (1) on substrates of varying geological age; and (2) in environments with varying ecophysiological barriers to growth and survival. Results: PDss is strongly positively correlated with species richness (SR), whereas MNTD has a negative correlation. Communities on geologically young- and intermediate-aged substrates (western and central Amazonia respectively) have the highest SR, and therefore the highest PDss and the lowest MNTD. We find that the youngest and oldest substrates (the latter on the Brazilian and Guiana Shields) have the highest ses.PDss and ses.MNTD. MPD and ses.MPD are strongly correlated with how evenly taxa are distributed among the three principal angiosperm clades and are both highest in western Amazonia. Meanwhile, seasonally dry tropical forest (SDTF) and forests on white sands have low PD, as evaluated by any metric. Main conclusions: High ses.PDss and ses.MNTD reflect greater lineage diversity in communities. We suggest that high ses.PDss and ses.MNTD in western Amazonia results from its favourable, easy-to-colonize environment, whereas high values in the Brazilian and Guianan Shields may be due to accumulation of lineages over a longer period of time. White-sand forests and SDTF are dominated by close relatives from fewer lineages, perhaps reflecting ecophysiological barriers that are difficult to surmount evolutionarily. Because MPD and ses.MPD do not reflect lineage diversity per se, we suggest that PDss, ses.PDss and ses.MNTD may be the most useful diversity metrics for setting large-scale conservation priorities. © 2015 John Wiley & Sons Ltd.  
  Address Universidad Autónoma del Beni, Av. Ejército Nacional, Riberalta, Riberalta, Bolivia  
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  Notes Export Date: 22 October 2015 Approved no  
  Call Number EcoFoG @ webmaster @ Serial 634  
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Author Marcon, E.; Traissac, S.; Puech, F.; Lang, G. pdf  url
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  Title Tools to characterize point patterns: dbmss for R Type Journal Article
  Year 2015 Publication Journal of Statistical Software Abbreviated Journal Journal of Statistical Software  
  Volume 67 Issue Codesnippet3 Pages 1-15  
  Keywords Point patterns; R; Spatial structure  
  Abstract The dbmss package for R provides an easy-to-use toolbox to characterize the spatial structure of point patterns. Our contribution presents the state of the art of distance-based methods employed in economic geography and which are also used in ecology. Topographic functions such as Ripley’s K, absolute functions such as Duranton and Overman’s Kd and relative functions such as Marcon and Puech’s M are implemented. Their confidence envelopes (including global ones) and tests against counterfactuals are included in the package. © 2015, American Statistical Association. All rights reserved.  
  Address AgroParisTech, INRA, UMR 518 Math. Info. Appli., 16 rue Claude Bernard, Paris, France  
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  Notes Export Date: 22 October 2015 Approved no  
  Call Number EcoFoG @ webmaster @ Serial 635  
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Author Talaga, S.; Dejean, A.; Carinci, R.; Gaborit, P.; Dusfour, I.; Girod, R. doi  openurl
  Title Updated Checklist of the Mosquitoes (Diptera: Culicidae) of French Guiana Type Journal Article
  Year 2015 Publication Journal of Medical Entomology Abbreviated Journal Journal of Medical Entomology  
  Volume 52 Issue 5 Pages 770-782  
  Keywords culicid; Neotropics; South America; species checklist; vector  
  Abstract The incredible mosquito species diversity in the Neotropics can provoke major confusion during vector control programs when precise identification is needed. This is especially true in French Guiana where studies on mosquito diversity practically ceased 35 yr ago. In order to fill this gap, we propose here an updated and comprehensive checklist of the mosquitoes of French Guiana, reflecting the latest changes in classification and geographical distribution and the recognition of current or erroneous synonymies. This work was undertaken in order to help ongoing and future research on mosquitoes in a broad range of disciplines such as ecology, biogeography, and medical entomology. Thirty-two valid species cited in older lists have been removed, and 24 species have been added including 12 species (comprising two new genera and three new subgenera) reported from French Guiana for the first time. New records are from collections conducted on various phytotelmata in French Guiana and include the following species: Onirion sp. cf Harbach and Peyton (2000), Sabethes (Peytonulus) hadrognathus Harbach, Sabethes (Peytonulus) paradoxus Harbach, Sabethes (Peytonulus) soperi Lane and Cerqueira, Sabethes (Sabethinus) idiogenes Harbach, Sabethes (Sabethes) quasicyaneus Peryassú , Runchomyia (Ctenogoeldia) magna (Theobald), Wyeomyia (Caenomyiella) sp. cf Harbach and Peyton (1990), Wyeomyia (Dendromyia) ypsipola Dyar, Wyeomyia (Hystatomyia) lamellata (Bonne-Wepster and Bonne), Wyeomyia (Miamyia) oblita (Lutz), and Toxorhynchites (Lynchiella) guadeloupensis (Dyar and Knab). At this time, the mosquitoes of French Guiana are represented by 235 species distributed across 22 genera, nine tribes, and two subfamilies.  
  Address UnitÉ d'Entomologie Médicale, Institut Pasteur de la Guyane, 23 Avenue Pasteur, Cayenne Cedex, France  
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  Notes Export Date: 22 October 2015 Approved no  
  Call Number EcoFoG @ webmaster @ Serial 636  
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Author Siefert, A.; Violle, C.; Chalmandrier, L.; Albert, C.H.; Taudiere, A.; Fajardo, A.; Aarssen, L.W.; Baraloto, C.; Carlucci, M.B.; Cianciaruso, M.V.; de L. Dantas, V.; de Bello, F.; Duarte, L.D.S.; Fonseca, C.R.; Freschet, G.T.; Gaucherand, S.; Gross, N.; Hikosaka, K.; Jackson, B.; Jung, V.; Kamiyama, C.; Katabuchi, M.; Kembel, S.W.; Kichenin, E.; Kraft, N.J.B.; Lagerström, A.; Bagousse-Pinguet, Y.L.; Li, Y.; Mason, N.; Messier, J.; Nakashizuka, T.; Overton, J.M.; Peltzer, D.A.; Pérez-Ramos, I.M.; Pillar, V.D.; Prentice, H.C.; Richardson, S.; Sasaki, T.; Schamp, B.S.; Schöb, C.; Shipley, B.; Sundqvist, M.; Sykes, M.T.; Vandewalle, M.; Wardle, D.A. url  openurl
  Title A global meta-analysis of the relative extent of intraspecific trait variation in plant communities Type Journal Article
  Year 2015 Publication Ecology Letters Abbreviated Journal Ecology Letters  
  Volume 18 Issue 12 Pages 1406-1419  
  Keywords Community ecology; Functional diversity; Interspecific variation; Intraspecific variability; Leaf trait; Plant functional trait; Trait-based ecology  
  Abstract Recent studies have shown that accounting for intraspecific trait variation (ITV) may better address major questions in community ecology. However, a general picture of the relative extent of ITV compared to interspecific trait variation in plant communities is still missing. Here, we conducted a meta-analysis of the relative extent of ITV within and among plant communities worldwide, using a data set encompassing 629 communities (plots) and 36 functional traits. Overall, ITV accounted for 25% of the total trait variation within communities and 32% of the total trait variation among communities on average. The relative extent of ITV tended to be greater for whole-plant (e.g. plant height) vs. organ-level traits and for leaf chemical (e.g. leaf N and P concentration) vs. leaf morphological (e.g. leaf area and thickness) traits. The relative amount of ITV decreased with increasing species richness and spatial extent, but did not vary with plant growth form or climate. These results highlight global patterns in the relative importance of ITV in plant communities, providing practical guidelines for when researchers should include ITV in trait-based community and ecosystem studies. © 2015 John Wiley & Sons Ltd/CNRS.  
  Address Department of Physical Geography and Ecosystem Science, Lund University, Sölvegatan 12, Lund, Sweden  
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  Notes Export Date: 16 November 2015 Approved no  
  Call Number EcoFoG @ webmaster @ Serial 637  
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Author Richard-Hansen, C.; Jaouen, G.; Denis, T.; Brunaux, O.; Marcon, E.; Guitet, S. url  openurl
  Title Landscape patterns influence communities of medium-to large-bodied vertebrates in undisturbed terra firme forests of French Guiana Type Journal Article
  Year 2015 Publication Journal of Tropical Ecology Abbreviated Journal Journal of Tropical Ecology  
  Volume 31 Issue 5 Pages 423-436  
  Keywords Animal communities; diversity; environmental heterogeneity; French Guiana; landscape ecology; species-habitat association  
  Abstract Whereas broad-scale Amazonian forest types have been shown to influence the structure of the communities of medium-to large-bodied vertebrates, their natural heterogeneity at smaller scale or within the terra firme forests remains poorly described and understood. Diversity indices of such communities and the relative abundance of the 21 most commonly observed species were compared from standardized line-transect data across 25 study sites distributed in undisturbed forests in French Guiana. We first assessed the relevance of a forest typology based on geomorphological landscapes to explain the observed heterogeneity. As previously found for tree beta-diversity patterns, this new typology proved to be a non-negligible factor underlying the beta diversity of the communities of medium-to large bodied vertebrates in French Guianan terra firme forests. Although the species studied are almost ubiquitous across the region, they exhibited habitat preferences through significant variation in abundance and in their association index with the different landscape types. As terra firme forests represent more than 90% of the Amazon basin, characterizing their heterogeneity-including faunal communities-is a major challenge in neotropical forest ecology. © 2015 Cambridge University Press.  
  Address ONCFS, EcoFoG, Kourou Cedex, France  
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  Notes Export Date: 16 November 2015 Approved no  
  Call Number EcoFoG @ webmaster @ Serial 638  
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Author Guitet, S.; Herault, B.; Molto, Q.; Brunaux, O.; Couteron, P. pdf  url
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  Title Spatial structure of above-ground biomass limits accuracy of carbon mapping in rainforest but large scale forest inventories can help to overcome Type Journal Article
  Year 2015 Publication PLoS ONE Abbreviated Journal PLoS ONE  
  Volume 10 Issue 9 Pages e0138456  
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  Abstract Precise mapping of above-ground biomass (AGB) is a major challenge for the success of REDD+ processes in tropical rainforest. The usual mapping methods are based on two hypotheses: a large and long-ranged spatial autocorrelation and a strong environment influence at the regional scale. However, there are no studies of the spatial structure of AGB at the landscapes scale to support these assumptions.We studied spatial variation in AGB at various scales using two large forest inventories conducted in French Guiana. The dataset comprised 2507 plots (0.4 to 0.5 ha) of undisturbed rainforest distributed over the whole region. After checking the uncertainties of estimates obtained from these data, we used half of the dataset to develop explicit predictive models including spatial and environmental effects and tested the accuracy of the resulting maps according to their resolution using the rest of the data. Forest inventories provided accurate AGB estimates at the plot scale, for a mean of 325 Mg.ha-1. They revealed high local variability combined with a weak autocorrelation up to distances of no more than10 km. Environmental variables accounted for a minor part of spatial variation. Accuracy of the best model including spatial effects was 90 Mg.ha-1 at plot scale but coarse graining up to 2-km resolution allowed mapping AGB with accuracy lower than 50 Mg.ha-1. Whatever the resolution, no agreement was found with available pan-tropical reference maps at all resolutions.We concluded that the combined weak autocorrelation and weak environmental effect limit AGB maps accuracy in rainforest, and that a trade-off has to be found between spatial resolution and effective accuracy until adequate “wall-to-wall” remote sensing signals provide reliable AGB predictions. Waiting for this, using large forest inventories with low sampling rate (<0.5%) may be an efficient way to increase the global coverage of AGB maps with acceptable accuracy at kilometric resolution. Copyright: © 2015 Guitet et al.  
  Address Institut de Recherche Pour le Développement (IRD), UMR Amap, Montpellier, France  
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  Notes Export Date: 25 November 2015 Approved no  
  Call Number EcoFoG @ webmaster @ Serial 639  
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Author Talaga, S.; Murienne, J.; Dejean, A.; Leroy, C. pdf  url
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  Title Online database for mosquito (Diptera, Culicidae) occurrence records in French guiana Type Journal Article
  Year 2015 Publication ZooKeys Abbreviated Journal ZooKeys  
  Volume 2015 Issue 532 Pages 107-115  
  Keywords Diversity; French guiana; Mosquitoes; Neotropics; Occurrence  
  Abstract A database providing information on mosquito specimens (Arthropoda: Diptera: Culicidae) collected in French Guiana is presented. Field collections were initiated in 2013 under the auspices of the CEnter for the study of Biodiversity in Amazonia (CEBA: http://www.labexceba.fr/en/). This study is part of an ongoing process aiming to understand the distribution of mosquitoes, including vector species, across French Guiana. Occurrences are recorded after each collecting trip in a database managed by the laboratory Evolution et Diversité Biologique (EDB), Toulouse, France. The dataset is updated monthly and is available online. Voucher specimens and their associated DNA are stored at the laboratory Ecologie des Forêts de Guyane (Ecofog), Kourou, French Guiana. The latest version of the dataset is accessible through EDB’s Integrated Publication Toolkit at http://130.120.204.55:8080/ipt/resource.do?r=mosquitoesof french_guiana or through the Global Biodiversity Information Facility data portal at http://www.gbif.org/ dataset/5a8aa2ad-261c-4f61-a98e-26dd752fe1c5 It can also be viewed through the Guyanensis platform at http://guyanensis.ups-tlse.fr © Stanislas Talaga et al.  
  Address IRD, Laboratoire de botAnique et Modélisation de l’Architecture des Plantes et des végétations (AMAP; UMR 123), Boulevard de la Lironde, TA A-51/PS2, Montpellier, France  
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  Notes Export Date: 25 November 2015 Approved no  
  Call Number EcoFoG @ webmaster @ Serial 640  
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Author Vedel, V.; Cerdan, A.; Martinez, Q.; Baraloto, C.; Petitclerc, F.; Orivel, J.; Fortunel, C. url  openurl
  Title Day-time vs. Night-time sampling does not affect estimates of spider diversity across a land use gradient in the Neotropics Type Journal Article
  Year 2015 Publication Journal of Arachnology Abbreviated Journal Journal of Arachnology  
  Volume 43 Issue 3 Pages 413-416  
  Keywords Araneae; community; day; night; sampling protocol  
  Abstract To obtain a reliable description of spider communities, robust sampling protocols are crucial. However, it remains unclear if descriptions of spider communities in tropical habitats require both day and night sampling. Here we tested whether sampling both day and night in high and low vegetation strata would lead to better diversity estimates of spider communities than sampling at only one period of the day. We determined spider taxonomic diversity in a network of 12 plots in French Guiana along a vegetation gradient. We found high alpha diversity of spiders as expected for a tropical area at every site. We showed strong differences in spider alpha and beta diversity between high and low vegetation strata, while they were similar between day and night sampling. Our results suggest that collecting spiders at only one period is sufficient to describe the diversity of spider communities across land use types in the neotropics. © The American Arachnological Society.  
  Address Department of Biology, University of Maryland, College Park, MD, United States  
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  Notes Export Date: 10 December 2015 Approved no  
  Call Number EcoFoG @ webmaster @ Serial 641  
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