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Author Garcia-Davila, C.; Aldana Gomero, D.; Renno, J.-F.; Diaz Soria, R.; Hidalgo Pizango, G.; Flores Llampazo, G.; Castro-Ruiz, D.; Mejia de Loayza, E.; Angulo Chavez, C.; Mader, M.; Tysklind, N.; Paredes-Villanueva, K.; del Castillo Torres, D.; Degen, B.; Honorio Coronado, E.N. doi  openurl
  Title Molecular evidence for three genetic species of Dipteryx in the Peruvian Amazon Type Journal Article
  Year 2020 Publication Genetica Abbreviated Journal Genetica  
  Volume 148 Issue 1 Pages 1-11  
  Keywords D. micrantha; Dipteryx charapilla; Genetic diversity; Microsatellites; Sequencing; Shihuahuaco; microsatellite DNA; plant DNA; allele; Dipteryx; DNA sequence; genetic variation; genetics; genotype; haplotype; Peru; phylogeny; plastid; river; species difference; Alleles; Dipteryx; DNA, Plant; Genetic Variation; Genotype; Haplotypes; Microsatellite Repeats; Peru; Phylogeny; Plastids; Rivers; Sequence Analysis, DNA; Species Specificity  
  Abstract There is a high international demand for timber from the genus Dipteryx, or “shihuahuaco” as it is known in Peru. Developing tools that allow the identification and discrimination of Dipteryx species is therefore important for supporting management of natural populations and to underpin legal trade of its timber. The objective of this study was the molecular characterization of Dipteryx species in the Peruvian Amazonia. Two plastid regions (cpDNA: trnH–psbA and matK) were sequenced and 11 microsatellite markers (nDNA) were genotyped for 32 individuals identified as Dipteryx charapilla, D. micrantha morphotype 1 and D. micrantha morphotype 2. Using the concatenated sequences of the plastid genes, we identified ten haplotypes that were not shared between the species or between the D. micrantha morphotypes. Haplotypic diversity was greater in D. micrantha morphotype 2 and D. charapilla than in D. micrantha morphotype 1, which presented only one haplotype with a wide distribution in Peru. The microsatellites allowed the discrimination of the same three clades and identified diagnostic alleles for each clade. These results allowed us to demonstrate that the two morphotypes of D. micrantha are different at both the plastid and nuclear markers, which supports the existence of three genetically distinct species in Peru. This study provides information for the genetic discrimination of Dipteryx species and emphasises the importance of conserving the genetic variability of this genus in the Peruvian Amazonia. © 2019, Springer Nature Switzerland AG.  
  Address Carrera de Ingeniería Foresta, Laboratorio de Dendrocronología, Facultad de Ciencias Agrícolas, Universidad Autónoma Gabriel René Moreno, Km 9 carretera al Norte, El Vallecito, Santa Cruz, Bolivia  
  Corporate Author Thesis  
  Publisher (down) Springer Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 00166707 (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 990  
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Author Céréghino, R.; Corbara, B.; Leroy, C.; Carrias, J.-F. doi  openurl
  Title Ecological determinants of community structure across the trophic levels of freshwater food webs: a test using bromeliad phytotelmata Type Journal Article
  Year 2020 Publication Hydrobiologia Abbreviated Journal Hydrobiologia  
  Volume 847 Issue 2 Pages 391-402  
  Keywords Environmental filtering; Functional group; Neotropical; Niche; Trophic interactions; alga; assembly rule; bacterium; community structure; ecological modeling; environmental conditions; food web; freshwater ecosystem; functional group; Neotropic Ecozone; niche; protozoan; taxonomy; trophic interaction; trophic level; algae; Invertebrata; Protozoa  
  Abstract Understanding the relative importance of habitat and biotic drivers on community assembly across food web components is an important step towards predicting the consequences of environmental changes. Because documenting entire food webs is often impractical, this question has been only partially investigated. Here, we partitioned variation in species assemblages of the major components of tank bromeliad food webs (bacteria, algae, protozoans, detritivorous and predatory invertebrates) into habitat and biotic determinants and examined the influence of habitat variables and predator or prey abundance on all taxonomic assemblages. Ecological determinism of assemblage structure ranged from weak in bacteria (< 10% of the explained variance) to strong in predatory invertebrates (90%). Habitat features and canopy openness significantly influenced species assemblages; however, prey or predator density had far and away the most significant structuring effects. If biotic forces are at least as important as the abiotic forces while the importance of stochasticity declines towards upper trophic levels, then trophic levels could respond differently to natural or anthropogenic disturbance and to shifts in species distributions. The effects of such differential responses on food web reconfiguration, however, remain to be elucidated. © 2019, Springer Nature Switzerland AG.  
  Address UMR EcoFoG (AgroParisTech, CIRAD, CNRS, INRA, Université de Guyane, Université des Antilles), Kourou, 97310, France  
  Corporate Author Thesis  
  Publisher (down) Springer Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 00188158 (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 996  
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Author Vacher, Corinne ; Castagneyrol, Bastien ; Jousselin, Emmanuelle ; Schimann, Heidy doi  openurl
  Title Trees and Insects Have Microbiomes: Consequences for Forest Health and Management Type Journal Article
  Year 2021 Publication Current Forestry Reports Abbreviated Journal  
  Volume 7 Issue 2 Pages 81-96  
  Keywords  
  Abstract Purpose of Review Forest research has shown for a long time that microorganisms influence tree-insect interactions, but the complexity of microbial communities, as well as the holobiont nature of both trees and insect herbivores, has only recently been taken fully into account by forest entomologists and ecologists. In this article, we review recent findings on the effects of tree-insect-microbiome interactions on the health of tree individuals and discuss whether and how knowledge about tree and insect microbiomes could be integrated into forest health management strategies. We then examine the effects tree-insect-microbiome interactions on forest biodiversity and regeneration, highlighting gaps in our knowledge at the ecosystem scale. Recent Findings Multiple studies show that herbivore damage in forest ecosystems is clearly influenced by tripartite interactions between trees, insects and their microbiomes. Recent research on the plant microbiome indicates that microbiomes of planted trees could be managed at several stages of production, from seed orchards to mature forests, to improve the resistance of forest plantations to insect pests. Therefore, the tree microbiome could potentially be fully integrated into forest health management strategies. To achieve this aim, future studies will have to combine, as has long been done in forest research, holistic goals with reductionist approaches. Efforts should be made to improve our understanding of how microbial fluxes between trees and insects determine the health of forest ecosystems, and to decipher the underlying mechanisms, through the development of experimental systems in which microbial communities can be manipulated. Knowledge about tree-insect-microbiome interactions should then be integrated into spatial models of forest dynamics to move from small-scale mechanisms to forest ecosystem-scale predictions.  
  Address  
  Corporate Author Thesis  
  Publisher (down) Springer Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 1059  
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Author Chartier, M.; Gibernau, M.; Renner, S.S. url  openurl
  Title The evolution of pollinator-plant interaction types in the araceae Type Journal Article
  Year 2014 Publication Evolution Abbreviated Journal Evolution  
  Volume 68 Issue 5 Pages 1533-1543  
  Keywords Ancestral state reconstruction; Inflorescence traits; Phylogeny; Pollination syndromes; Trap flowers  
  Abstract Most plant-pollinator interactions are mutualistic, involving rewards provided by flowers or inflorescences to pollinators. Antagonistic plant-pollinator interactions, in which flowers offer no rewards, are rare and concentrated in a few families including Araceae. In the latter, they involve trapping of pollinators, which are released loaded with pollen but unrewarded. To understand the evolution of such systems, we compiled data on the pollinators and types of interactions, and coded 21 characters, including interaction type, pollinator order, and 19 floral traits. A phylogenetic framework comes from a matrix of plastid and new nuclear DNA sequences for 135 species from 119 genera (5342 nucleotides). The ancestral pollination interaction in Araceae was reconstructed as probably rewarding albeit with low confidence because information is available for only 56 of the 120-130 genera. Bayesian stochastic trait mapping showed that spadix zonation, presence of an appendix, and flower sexuality were correlated with pollination interaction type. In the Araceae, having unisexual flowers appears to have provided the morphological precondition for the evolution of traps. Compared with the frequency of shifts between deceptive and rewarding pollination systems in orchids, our results indicate less lability in the Araceae, probably because of morphologically and sexually more specialized inflorescences. © 2013 The Society for the Study of Evolution.  
  Address Department of Biology, University of Munich, Munich, 80638, Germany  
  Corporate Author Thesis  
  Publisher (down) Society for the Study of Evolution Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 15585646 (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Export Date: 30 May 2014; Source: Scopus; Coden: Evola; Language of Original Document: English Approved no  
  Call Number EcoFoG @ webmaster @ Serial 544  
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Author Heuertz, M.; Caron, H.; Scotti-Saintagne, C.; Pétronelli, P.; Engel, J.; Tysklind, N.; Miloudi, S.; Gaiotto, F.A.; Chave, J.; Molino, J.-F.; Sabatier, D.; Loureiro, J.; Budde, K.B. pdf  doi
openurl 
  Title The hyperdominant tropical tree Eschweilera coriacea (Lecythidaceae) shows higher genetic heterogeneity than sympatric Eschweilera species in French Guiana Type Journal Article
  Year 2020 Publication Plant Ecology and Evolution Abbreviated Journal Plant Ecol. Evol.  
  Volume 153 Issue 1 Pages 67-81  
  Keywords Cryptic species; Eschweilera; Hyperdominant tropical trees; Microsatellites; Species complex; Species delimitation  
  Abstract Background and aims – The evolutionary history of Amazonia’s hyperabundant tropical tree species, also known as “hyperdominant” species, remains poorly investigated. We assessed whether the hyperdominant Eschweilera coriacea (DC.) S.A.Mori (Lecythidaceae) represents a single genetically cohesive species, and how its genetic constitution relates to other species from the same clade with which it occurs sympatrically in French Guiana. Methods – We sampled 152 individuals in nine forest sites in French Guiana, representing 11 species of the genus Eschweilera all belonging to the Parvifolia clade, with emphasis on E. coriacea. Samples were genotyped at four simple sequence repeat (SSR) markers. We delimited gene pools, i.e., genetically coherent putative taxa, using STRUCTURE software and principal component analysis. We compared the genetic assignment of individuals with their morphological species determination and estimated genetic diversity and differentiation for gene pools and species. We also estimated genome size using flow cytometry. Key results – SSR profiles commonly displayed up to four alleles per genotype, suggesting that the investigated Eschweilera species bear a paleopolyploid signature. Flow cytometry suggested that the studied species are diploid with haploid genome sizes of 871–1046 Mbp. We detected five gene pools and observed a good correspondence between morphological and genetic delimitation for Eschweilera sagotiana Miers and the undescribed morphospecies E. sp. 3 (which resembles E. grandiflora (Aubl.) Sandwith), and to a lesser extent for E. decolorans Sandwith and E. micrantha (O.Berg) Miers. Eschweilera coriacea was the most genetically diverse species and included individuals assigned to each gene pool. Conclusions – We found no conclusive evidence for cryptic species within E. coriacea in French Guiana. SSRs detected fewer gene pools than expected based on morphology in the Parvifolia clade but discriminated evolutionary relationships better than available plastid markers. A positive trend between demographic abundance of species and allelic richness illustrates that hyperdominants may have a high evolutionary potential. This hypothesis can be tested using more powerful genomic data in combination with tree phenotypic trait variation and characterization of niche breadth, to enhance our understanding of the causes of hyperdominance in Amazonian trees.  
  Address University of Copenhagen, Forest, Nature and Biomass, Rolighedsvej 23, Frederiksberg C, DK-1958, Denmark  
  Corporate Author Thesis  
  Publisher (down) Societe Royale de Botanique de Belgique Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 20323913 (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 928  
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Author Scotti, I.; Delph, L.F. openurl 
  Title Selective trade-offs and sex-chromosome evolution in Silene latifolia Type Journal Article
  Year 2006 Publication Evolution Abbreviated Journal Evolution  
  Volume 60 Issue 9 Pages 1793-1800  
  Keywords antagonistic genes; linkage map; quantitative trait loci; sex-specific expression; Y chromosome  
  Abstract Alleles of sexually antagonistic genes (i.e., genes with alleles affecting fitness in opposite directions in the two sexes) can avoid expression in the sex to which they are detrimental via two processes: they are subsumed into the nonrecombining, sex-determining portion of the sex chromosomes or they evolve sex-limited expression. The former is considered more likely and leads to Y-chromosome degeneration. We mapped quantitative trait loci of major effect for sexually dimorphic traits of Silene latifolia to the recombining portions of the sex chromosomes and found them to exhibit sex-specific expression, with the Y chromosome in males controlling a relatively larger proportion of genetic variance than the X in females and the average autosome. Both reproductive and ecophysiological traits map to the recombining region of the sex chromosomes. We argue that genetic correlations among traits maintain recombination and polymorphism for these genes because of balancing selection in males, whereas sex-limited expression represses detrimental alleles in females. Our data suggest that the Y chromosome of S. latifolia plays a major role in the control of key metabolic activities beyond reproductive functions.  
  Address Indiana Univ, Dept Biol, Bloomington, IN 47405 USA, Email: ivan.scotti@kourou.cirad.fr  
  Corporate Author Thesis  
  Publisher (down) SOC STUDY EVOLUTION Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0014-3820 ISBN Medium  
  Area Expedition Conference  
  Notes ISI:000241226800005 Approved no  
  Call Number EcoFoG @ eric.marcon @ Serial 174  
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Author Dutech, C.; Maggia, L.; Tardy, C.; Joly, H.I.; Jarne, P. openurl 
  Title Tracking a genetic signal of extinction-recolonization events in a neotropical tree species: Vouacapoua americana aublet in french guiana Type Journal Article
  Year 2003 Publication Evolution Abbreviated Journal Evolution  
  Volume 57 Issue 12 Pages 2753-2764  
  Keywords allelic richness; caesalpinioideae; chloroplast DNA; climatic changes; cytonuclear disequilibrium; legummosae; microsatellite loci; tropical rainforest  
  Abstract Drier periods from the late Pleistocene and early Holocene have been hypothesized to have caused the disappearance of various rainforest species over large geographical areas in South America and restricted the extant populations to mesic sites. Subsequent improvement in climatic conditions has been associated with recolonization. Changes in population size associated with these extinction-recolonization events should have affected genetic diversity within species. However, these historical hypotheses and their genetic consequences have rarely been tested in South America. Here, we examine the diversity of the chloroplast and nuclear genomes in a Neotropical rainforest tree species, Vouacapoua americana (Leguminosae, Caesalpinioideae) in French Guiana. The chloroplast diversity was analyzed using a polymerase chain reaction-restriction fragment length polymorphism method (six pairs of primers) in 29 populations distributed over most of French Guiana, and a subset of 17 populations was also analyzed at nine polymorphic microsatellite loci. To determine whether this species has experienced extinction-recolonization, we sampled populations in areas supposedly not or only slightly affected by climatic changes, where the populations would not have experienced frequent extinction, and in areas that appear to have been recently recolonized. In the putatively recolonized areas, we found patches of several thousands of hectares homogeneous for chloroplast variation that can be interpreted as the effect of recolonization processes from several geographical origins. In addition, we observed that, for both chloroplast and nuclear genomes, the populations in newly recolonized areas exhibited a significantly smaller allelic richness than others. Controlling for geographic distance, we also detected a significant correlation between chloroplast and nuclear population differentiation. This result indicates a cytonuclear disequilibrium that can be interpreted as a historical signal of a genetic divergence between fragmented populations. In conclusion, the spatial genetic structure of contemporary V. americana populations shows evidence that this species has experienced large extinction-recolonization events, which were possibly caused by past climatic change.  
  Address CIRAD Foret, Silvolab, Ecol Mol, F-97387 Kourou, France, Email: laruent.maggia@cirad.fr  
  Corporate Author Thesis  
  Publisher (down) SOC STUDY EVOLUTION Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0014-3820 ISBN Medium  
  Area Expedition Conference  
  Notes ISI:000188061800007 Approved no  
  Call Number EcoFoG @ eric.marcon @ Serial 241  
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Author Delaval, M.; Charles-Dominique, P. openurl 
  Title Edge effects on frugivorous and nectarivorous bat communities in a neotropical primary forest in French Guiana Type Journal Article
  Year 2006 Publication Revue d'Ecologie (La Terre et la Vie) Abbreviated Journal Rev. Ecol.-Terre Vie  
  Volume 61 Issue 4 Pages 343-352  
  Keywords  
  Abstract The impact of a road crossing a continuous Guyana primary forest was studied through the analysis of qualitative and quantitative changes in a frugivorous and nectarivorous bat community at different distances from forest edge. Bats were captured along three 3-km forest transects perpendicular to the edge, and at the Nouragues Station located 150 km in the interior of the primary forest block, in an uninhabited area. Along the 3-km transects, we caught over seven times more individuals than in primary forest, this value decreasing according to the distance from the edge. Moreover, at the very edge, species richness was higher than along transects, probably due to exchanges between primary forest and the open habitats. On the contrary, diversity values at forest edges were lower than in primary forest, with a demographic explosion of a few opportunistic phyllostomid species such as Carollia perspicillata and Artibeus jamaicensis. Species restricted to degraded habitat like Glossophaga soricina and Artibeus cinereus were still present 3 km away from the edge, where the proportion of C perspicillata was seven times higher than in primary forest at Nouragues. These changes in the community of bats have important consequences on seed and pollen dispersal. So edge effects may significantly affect both faunal and floral assemblage. We conclude that changes in bat community occur up to at least 3 km from forest edge, i. e. at a greater distance than that found for all other vertebrates previously studied. By their implications our results should be considered in habitat and species conservation management plans.  
  Address Dept Ecol & Gest Biodivers, UMR 5176, F-91800 Brunoy, France, Email: marguerite.delaval@wanadoo.fir  
  Corporate Author Thesis  
  Publisher (down) SOC NATL PROTECTION NATURE ACCLIMATATION FRANCE Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0249-7395 ISBN Medium  
  Area Expedition Conference  
  Notes ISI:000244361200003 Approved no  
  Call Number EcoFoG @ eric.marcon @ Serial 168  
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Author Delaval, M.; Henry, M.; Charles-Dominique, P. openurl 
  Title Interspecific competition and niche partitioning: Example of a neotropical rainforest bat community Type Journal Article
  Year 2005 Publication Revue d'Ecologie (La Terre et la Vie) Abbreviated Journal Rev. Ecol.-Terre Vie  
  Volume 60 Issue 2 Pages 149-165  
  Keywords  
  Abstract To understand the organization of a bat community and the coexistence of sympatric species, it is essential to understand how species use and share common resources. First, we describe a bat community in a primary rainforest of French Guiana. The presence of particular roosting sites, such as caves, and the absence of disturbances are important local factors in structuring communities. In the course of this study, we focused on the three most common species of three vegetarian bat guilds (understorey frugivores, canopy frugivores and nectarivores). The local coexistence of these species is possible thanks to space, food and/or time partitioning. Space partitioning is consistent with the hypothesis that smaller bats with a more manoeuvrable flight tend to occupy more cluttered space less attractive to their competitors and have smaller home range. We observed a time partitioning that is likely to reduce competition among some frugivorous bat species by reducing direct interference during foraging. Besides an interest for the field community ecology, this study of a community living in a primary forest can be used as a reference for non disturbed habitat for conservation purposes.  
  Address Dept Ecol & Gestion Biodivers, UMR 5176, F-91800 Brunoy, France, Email: marguerite.delaval@wanadoo.fr  
  Corporate Author Thesis  
  Publisher (down) SOC NATL PROTECTION NATURE ACCLIMATATION FRANCE Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0249-7395 ISBN Medium  
  Area Expedition Conference  
  Notes ISI:000230973300005 Approved no  
  Call Number EcoFoG @ eric.marcon @ Serial 231  
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Author Aimene, Y.; Vidal-Salle, E.; Hagege, B.; Sidoroff, F.; Boisse, P. openurl 
  Title A Hyperelastic Approach for Composite Reinforcement Large Deformation Analysis Type Journal Article
  Year 2010 Publication Journal of Composite Materials Abbreviated Journal J. Compos Mater.  
  Volume 44 Issue 1 Pages 5-26  
  Keywords hyperelasticity; woven reinforcements; forming; fabric mechanical behavior; finite element  
  Abstract A hyperelastic constitutive model is developed for textile composite reinforcement at large strain. A potential is proposed, which is the addition of two tension and one shear energies. The proposed potential is a function of the right Cauchy Green and structural tensor invariants whose choice corresponds to textile composite reinforcement mechanical behavior which exhibits weak elongations in the fiber directions and large angular variations in the fabric plane. The model is implemented in a Vumat user routine of ABAQUS/Explicit. Some elementary tests are performed in order to identify the model and verify its validity. It is then used to simulate the hemispherical punch forming of balanced and unbalanced fabrics. A correct agreement is obtained with experimental forming processes.  
  Address [Aimene, Y.; Vidal-Salle, E.; Boisse, P.] Univ Lyon, INSA Lyon, LaMCoS, F-69621 Villeurbanne, France, Email: philippe.boisse@insa-lyon.fr  
  Corporate Author Thesis  
  Publisher (down) SAGE PUBLICATIONS LTD Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0021-9983 ISBN Medium  
  Area Expedition Conference  
  Notes ISI:000273509100001 Approved no  
  Call Number EcoFoG @ eric.marcon @ Serial 84  
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