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Malé, P.-J.G.; Bardon, L.; Besnard, G.; Coissac, E.; Delsuc, F.; Engel, J.; Lhuillier, E.; Scotti-Saintagne, C.; Tinaut, A.; Chave, J. |
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Title |
Genome skimming by shotgun sequencing helps resolve the phylogeny of a pantropical tree family |
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Journal Article |
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Year  |
2014 |
Publication |
Molecular Ecology Resources |
Abbreviated Journal |
Mol. Ecol. Resour. |
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Volume |
14 |
Issue |
5 |
Pages |
966-975 |
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Next-generation sequencing; Organellar genome; Phylogenomics; Tropical trees |
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Whole genome sequencing is helping generate robust phylogenetic hypotheses for a range of taxonomic groups that were previously recalcitrant to classical molecular phylogenetic approaches. As a case study, we performed a shallow shotgun sequencing of eight species in the tropical tree family Chrysobalanaceae to retrieve large fragments of high-copy number DNA regions and test the potential of these regions for phylogeny reconstruction. We were able to assemble the nuclear ribosomal cluster (nrDNA), the complete plastid genome (ptDNA) and a large fraction of the mitochondrial genome (mtDNA) with approximately 1000×, 450× and 120× sequencing depth respectively. The phylogenetic tree obtained with ptDNA resolved five of the seven internal nodes. In contrast, the tree obtained with mtDNA and nrDNA data were largely unresolved. This study demonstrates that genome skimming is a cost-effective approach and shows potential in plant molecular systematics within Chrysobalanaceae and other under-studied groups. © 2014 John Wiley & Sons Ltd. |
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GeT-PlaGe, Genotoul, INRA Auzeville, Castanet-Tolosan, F-31326, France |
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Blackwell Publishing Ltd |
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17550998 (Issn) |
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Export Date: 1 September 2014; Correspondence Address: Malé, P.-J.G.; UMR 5174 Laboratoire Évolution and Diversité Biologique, CNRS, Université Paul Sabatier, ENFA, 118 route de Narbonne, Toulouse, F-31062, France; email: pjg.male@gmail.com |
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EcoFoG @ webmaster @ |
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559 |
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Carrias, J.-F.; Céréghino, R.; Brouard, O.; Pélozuelo, L.; Dejean, A.; Couté, A.; Corbara, B.; Leroy, C. |
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Title |
Two coexisting tank bromeliads host distinct algal communities on a tropical inselberg |
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Journal Article |
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Year |
2014 |
Publication |
Plant Biology |
Abbreviated Journal |
Plant Biol. |
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Volume |
16 |
Issue |
5 |
Pages |
997-1004 |
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Keywords |
Algae; Bromeliaceae; Inselberg; Neotropics; Phytotelmata; Aechmea; algae; Bromeliaceae; Bumilleriopsis; Catopsis berteroniana; Chlorella (unclassified Chlorophyceae); Chlorella (unclassified Trebouxiophyceae); Chlorella sp.; Cyanobacteria; Eukaryota; Invertebrata; Protozoa |
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The tank bromeliads Aechmea aquilega (Salisb.) and Catopsis berteroniana (Schultes f.) coexist on a sun-exposed Neotropical inselberg in French Guiana, where they permit conspicuous freshwater pools to form that differ in size, complexity and detritus content. We sampled the algal communities (both eukaryotic and cyanobacterial taxa, including colourless forms) inhabiting either A. aquilega (n = 31) or C. berteroniana (n = 30) and examined differences in community composition and biomass patterns in relation to several biotic and abiotic variables. Chlorella sp. and Bumilleriopsis sp. were the most common taxa and dominated the algal biomass in A. aquilega and C. berteroniana, respectively. Using a redundancy analysis, we found that water volume, habitat complexity and the density of phagotrophic protozoa and collector-gatherer invertebrates were the main factors explaining the distribution of the algal taxa among the samples. Hierarchical clustering procedures based on abundance and presence/absence data clearly segregated the samples according to bromeliad species, revealing that the algal communities in the smaller bromeliad species were not a subset of the communities found in the larger bromeliad species. We conclude that, even though two coexisting tank bromeliad populations create adjacent aquatic habitats, each population hosts a distinct algal community. Hence, bromeliad diversity is thought to promote the local diversity of freshwater algae in the Neotropics. © 2014 German Botanical Society and The Royal Botanical Society of the Netherlands. |
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IRD, UMR AMAP (botAnique et bioinforMatique de l'Architecture des Plantes), Montpellier, France |
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Blackwell Publishing Ltd |
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14388677 (Issn) |
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Export Date: 2 September 2014; Coden: Pbiof; Correspondence Address: Carrias, J.-F.; Clermont Université, Université Blaise Pascal, BP 10448, F-63000 Clermont-Ferrand, France; email: j-francois.carrias@univ-bpclermont.fr; Funding Details: LQ13C020005, NSFC, National Natural Science Foundation of China |
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EcoFoG @ webmaster @ |
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560 |
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Petit, M.; Céréghino, R.; Carrias, J.-F.; Corbara, B.; Dezerald, O.; Petitclerc, F.; Dejean, A.; Leroy, C. |
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Title |
Are ontogenetic shifts in foliar structure and resource acquisition spatially conditioned in tank-bromeliads? |
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Journal Article |
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Year |
2014 |
Publication |
Botanical Journal of the Linnean Society |
Abbreviated Journal |
Bot J Linn Soc |
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Volume |
175 |
Issue |
2 |
Pages |
299-312 |
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Keywords |
Aechmea mertensii; Camponotus femoratus; French Guiana; leaf traits; mutualistic ants; natural stable isotopes; ontogeny; Pachycondyla goeldii; phenotypic plasticity; plant morphology |
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Abstract |
The phenotypic plasticity of plants has been explored as a function of either ontogeny (apparent plasticity) or environment (adaptive plasticity), although few studies have analyzed these factors together. In the present study, we take advantage of the dispersal of Aechmea mertensii bromeliads by Camponotus femoratus or Pachycondyla goeldii ants in shaded and sunny environments, respectively, to quantify ontogenetic changes in morphological, foliar, and functional traits, and to analyze ontogenetic and ant species effects on 14 traits. Most of the morphological (plant height, number of leaves), foliar (leaf thickness, leaf mass area, total water content, trichome density), and functional (leaf δ13C) traits differed as a function of ontogeny. Conversely, only leaf δ15N showed an adaptive phenotypic plasticity. On the other hand, plant width, tank width, longest leaf length, stomatal density, and leaf C concentration showed an adaptation to local environment with ontogeny. The exception was leaf N concentration, which showed no trend at all. Aechmea mertensii did not show an abrupt morphological modification such as in heteroblastic bromeliads, although it was characterized by strong, size-related functional modifications for CO2 acquisition. The adaptive phenotypic variation found between the two ant species indicates the spatially conditioned plasticity of A. mertensii in the context of insect-assisted dispersal. However, ant-mediated effects on phenotypic plasticity in A. mertensii are not obvious because ant species and light environment are confounding variables. © 2014 The Linnean Society of London, Botanical Journal of the Linnean Society, 2014, 175, 299–312. |
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1095-8339 |
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EcoFoG @ webmaster @ |
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564 |
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Dejean, A.; Corbara, B. |
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Reactions by army ant workers to nestmates having had contact with sympatric ant species |
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Journal Article |
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Year |
2014 |
Publication |
Comptes Rendus Biologies |
Abbreviated Journal |
C. R. Biol. |
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337 |
Issue |
11 |
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642-645 |
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Army ants Antipredation Colony-mate recognition Eciton Transferring cuticular compounds; Eciton; Formicidae |
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It was recently shown that Pheidole megacephala colonies (an invasive species originating from Africa) counterattack when raided by the army ant, Eciton burchellii. The subsequent contact permits Pheidole cuticular compounds (that constitute the “colony odour”) to be transferred onto the raiding Eciton, which are then not recognised by their colony-mates and killed. Using a simple method for transferring cuticular compounds, we tested if this phenomenon occurs for Neotropical ants. Eciton workers rubbed with ants from four sympatric species were released among their colony-mates. Individuals rubbed with Solenopsis saevissima or Camponotus blandus workers were attacked, but not those rubbed with Atta sexdens, Pheidole fallax or with colony-mates (control lot). So, the chemicals of certain sympatric ant species, but not others, trigger intra-colonial aggressiveness in Eciton. We conclude that prey-ant chemicals might have played a role in the evolution of army ant predatory behaviour, likely influencing prey specialization in certain cases. |
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Clermont Université, Université Blaise-Pascal, LMGE, BP 10448Clermont-Ferrand, France |
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Elsevier Masson SAS |
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16310691 (Issn) |
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Export Date: 12 November 2014; Coden: Crboc; Correspondence Address: Dejean, A.; CNRS, É Cologie des Forêts de Guyane, UMR-CNRS 8172, BP 316, France |
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EcoFoG @ webmaster @ |
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566 |
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Gao, H.; Grüschow, S.; Barke, J.; Seipke, R.F.; Hill, L.M.; Orivel, J.; Yu, D.W.; Hutchings, M.; Goss, R.J.M. |
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Filipins: The first antifungal “weed killers” identified from bacteria isolated from the trap-ant |
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Journal Article |
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2014 |
Publication |
RSC Advances |
Abbreviated Journal |
RSC Adv. |
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4 |
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100 |
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57267-57270 |
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Anti-fungal |
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Allomerus ants ensure that they have sufficient nitrogen in their diet by trapping and consuming other insects. In order to construct their traps, like the more extensively studied leaf cutter ants, they employ fungal farming. Pest management within these fungal cultures has been speculated to be due to the ants' usage of actinomycetes capable of producing antifungal compounds, analogous to the leafcutter ant mutualism. Here we report the first identification of a series of antifungal compounds, the filipins, and their associated biosynthetic genes isolated from a bacterium associated with this system. |
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State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of ZoologyKunming, Yunnan, China |
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Royal Society of Chemistry |
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20462069 (Issn) |
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Export Date: 20 November 2014; Coden: Rscac; Correspondence Address: Goss, R.J.M.; School of Chemistry, University of St. AndrewsUnited Kingdom; Funding Details: 311848, EC, European Commission |
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EcoFoG @ webmaster @ |
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567 |
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Aili, S.R.; Touchard, A.; Escoubas, P.; Padula, M.P.; Orivel, J.; Dejean, A.; Nicholson, G.M. |
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Title |
Diversity of peptide toxins from stinging ant venoms |
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Journal Article |
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2014 |
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Toxicon |
Abbreviated Journal |
Toxicon |
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92 |
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166-178 |
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Ant venom; Chemotaxonomy; Disulfide linkage; Peptides; Venom biochemistry |
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Ants (Hymenoptera: Formicidae) represent a taxonomically diverse group of arthropods comprising nearly 13,000 extant species. Sixteen ant subfamilies have individuals that possess a stinger and use their venom for purposes such as a defence against predators, competitors and microbial pathogens, for predation, as well as for social communication. They exhibit a range of activities including antimicrobial, haemolytic, cytolytic, paralytic, insecticidal and pain-producing pharmacologies. While ant venoms are known to be rich in alkaloids and hydrocarbons, ant venoms rich in peptides are becoming more common, yet remain understudied. Recent advances in mass spectrometry techniques have begun to reveal the true complexity of ant venom peptide composition. In the few venoms explored thus far, most peptide toxins appear to occur as small polycationic linear toxins, with antibacterial properties and insecticidal activity. Unlike other venomous animals, a number of ant venoms also contain a range of homodimeric and heterodimeric peptides with one or two interchain disulfide bonds possessing pore-forming, allergenic and paralytic actions. However, ant venoms seem to have only a small number of monomeric disulfide-linked peptides. The present review details the structure and pharmacology of known ant venom peptide toxins and their potential as a source of novel bioinsecticides and therapeutic agents. |
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Laboratoire Écologie Fonctionnelle et Environnement, Université de Toulouse, 118 Route de NarbonneToulouse, France |
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Elsevier Ltd |
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00410101 (Issn) |
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Export Date: 2 December 2014; Coden: Toxia; Correspondence Address: Nicholson, G.M.; Neurotoxin Research Group, School of Medical and Molecular Biosciences, University of Technology SydneyAustralia |
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EcoFoG @ webmaster @ |
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568 |
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Cottet, K.; Genta-Jouve, G.; Fromentin, Y.; Odonne, G.; Duplais, C.; Laprévote, O.; Michel, S.; Lallemand, M.-C. |
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Comparative LC-MS-based metabolite profiling of the ancient tropical rainforest tree Symphonia globulifera |
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Journal Article |
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2014 |
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Phytochemistry |
Abbreviated Journal |
Phytochemistry |
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108 |
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102-108 |
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Kendrick mass defect; Lc-Ms; Plant organs; Symphonia globulifera; Untargeted metabolomics; Symphonia globulifera |
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In the last few years, several phytochemical studies have been undertaken on the tropical tree Symphonia globulifera leading to the isolation and characterisation of several compounds exhibiting antiparasitic activities against Plasmodium falciparum, Trypanosoma brucei and Leishmania donovani. The comparative LC-MS based metabolite profiling study conducted on the tree led to the identification of compounds originating from specific tissues. The results showed that renewable organs/tissues can be used as the starting material for the production of polycyclic poly-prenylated-acylphloroglucinols, therefore reducing impacts on biodiversity. This study also underlined the lack of knowledge on the secondary metabolites produced by S. globulifera since only a small number of the total detected features were putatively identified using the database of known compounds for the species. |
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Laboratoire de Chimie et Toxicologie Analytique et Cellulaire, UMR 8638, Université Paris Descartes Sorbonne Paris Cité, 4 Avenue de l'ObservatoireParis, France |
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Elsevier Ltd |
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00319422 (Issn) |
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Export Date: 2 December 2014; Coden: Pytca; Correspondence Address: Genta-Jouve, G.; Laboratoire de Pharmacognosie, UMR 8638, Université Paris Descartes Sorbonne Paris Cité, 4 Avenue de l'Observatoire, France |
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EcoFoG @ webmaster @ |
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569 |
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Lenoir, A.; Touchard, A.; Devers, S.; Christidès, J.-P.; Boulay, R.; Cuvillier-Hot, V. |
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Ant cuticular response to phthalate pollution |
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Journal Article |
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2014 |
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Environmental Science and Pollution Research |
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Environ. Sci. Pollut. Res. |
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21 |
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23 |
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13446-13451 |
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Absorption; Ants; Bbp; Bioindicator; Cuticle; Dbp; Dehp; DiBP; Phthalates; Pollutants |
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Phthalates are common atmospheric contaminants used in the plastic industry. Ants have been shown to constitute good bioindicators of phthalate pollution. Hence, phthalates remain trapped on ant cuticles which are mostly coated with long-chain hydrocarbons. In this study, we artificially contaminated Lasius niger ants with four phthalates: dibutyl phthalate (DBP), diisobutyl phthalate (DiBP), di(2-ethylhexyl) phthalate (DEHP), and benzyl butyl phthalate (BBP). The first three have previously been found on ants in nature in Touraine (France), while the fourth has not. The four phthalates disappeared rapidly (less than 5 days) from the cuticles of live ants. In contrast, on the cuticles of dead ants, DEHP quantities remained unchanged over time. These results indicate that phthalates are actively absorbed by the cuticles of live ants. Cuticular absorption of phthalates is nonspecific because eicosane, a nonnatural hydrocarbon on L. niger cuticle, was similarly absorbed. Ants are important ecological engineers and may serve as bioindicators of ecosystem health. We also suggest that ants and more generally terrestrial arthropods may contribute to the removal of phthalates from the local environment. |
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CNRS, UMR Écologie des Forêts de Guyane (EcoFoG), Campus Agronomique, BP 316Kourou Cedex, France |
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Springer Verlag |
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09441344 (Issn) |
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Export Date: 5 December 2014; Coden: Esple; Correspondence Address: Lenoir, A.; IRBI, Institut de Recherche sur la Biologie de l’Insecte, UMR CNRS 7261, Université François RabelaisFrance |
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EcoFoG @ webmaster @ |
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570 |
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Roggy, J.-C. ;Schimann, H.;Sabatier, D.;Molino, J.-F.;Freycon, V.;Domenach, A.-M. |
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Complementary N Uptake Strategies between Tree Species in Tropical Rainforest |
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Journal Article |
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2014 |
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International Scholarly Research Notices |
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ISRN |
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2014 |
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Article ID 427194 |
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1-6 |
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Within tree communities, the differential use of soil N mineral resources, a key factor in ecosystem functioning, may reflect functional complementarity, a major mechanism that could explain species coexistence in tropical rainforests. Eperua falcata and Dicorynia guianensis, two abundant species cooccurring in rainforests of French Guiana, were chosen as representative of two functional groups with complementary N uptake strategies (contrasting leaf d15N signatures related to the d15N of their soil N source, NO3- or NH4+). The objectives were to investigate if these strategies occurred under contrasted soil N resources in sites with distinct geological substrates representative of the coastal rainforests. Results showed that species displayed contrasting leaf d15N signatures on both substrates, confirming their complementary N uptake strategy. Consequently, their leaf 15N can be used to trace the presence of inorganic N-forms in soils (NH4+ and NO3-) and thus to indicate the capacity of soils to provide each of these two N sources to the plant community. |
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EcoFoG @ webmaster @ |
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576 |
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Hudson, L.N.; Newbold, T.; Contu, S.; Hill, S.L.L.; Lysenko, I.; De Palma, A.; Phillips, H.R.P.; Senior, R.A.; Bennett, D.J.; Booth, H.; Choimes, A.; Correia, D.L.P.; Day, J.; Echeverría-Londoño, S.; Garon, M.; Harrison, M.L.K.; Ingram, D.J.; Jung, M.; Kemp, V.; Kirkpatrick, L.; Martin, C.D.; Pan, Y.; White, H.J.; Aben, J.; Abrahamczyk, S.; Adum, G.B.; Aguilar-Barquero, V.; Aizen, M.A.; Ancrenaz, M.; Arbeláez-Cortés, E.; Armbrecht, I.; Azhar, B.; Azpiroz, A.B.; Baeten, L.; Báldi, A.; Banks, J.E.; Barlow, J.; Batáry, P.; Bates, A.J.; Bayne, E.M.; Beja, P.; Berg, A.; Berry, N.J.; Bicknell, J.E.; Bihn, J.H.; Böhning-Gaese, K.; Boekhout, T.; Boutin, C.; Bouyer, J.; Brearley, F.Q.; Brito, I.; Brunet, J.; Buczkowski, G.; Buscardo, E.; Cabra-García, J.; Calviño-Cancela, M.; Cameron, S.A.; Cancello, E.M.; Carrijo, T.F.; Carvalho, A.L.; Castro, H.; Castro-Luna, A.A.; Cerda, R.; Cerezo, A.; Chauvat, M.; Clarke, F.M.; Cleary, D.F.R.; Connop, S.P.; D'Aniello, B.; da Silva, P.G.; Darvill, B.; Dauber, J.; Dejean, A.; Diekötter, T.; Dominguez-Haydar, Y.; Dormann, C.F.; Dumont, B.; Dures, S.G.; Dynesius, M.; Edenius, L.; Elek, Z.; Entling, M.H.; Farwig, N.; Fayle, T.M.; Felicioli, A.; Felton, A.M.; Ficetola, G.F.; Filgueiras, B.K.C.; Fonte, S.J.; Fraser, L.H.; Fukuda, D.; Furlani, D.; Ganzhorn, J.U.; Garden, J.G.; Gheler-Costa, C.; Giordani, P.; Giordano, S.; Gottschalk, M.S.; Goulson, D.; Gove, A.D.; Grogan, J.; Hanley, M.E.; Hanson, T.; Hashim, N.R.; Hawes, J.E.; Hébert, C.; Helden, A.J.; Henden, J.-A.; Hernández, L.; Herzog, F.; Higuera-Diaz, D.; Hilje, B.; Horgan, F.G.; Horváth, R.; Hylander, K.; Isaacs-Cubides, P.; Ishitani, M.; Jacobs, C.T.; Jaramillo, V.J.; Jauker, B.; Jonsell, M.; Jung, T.S.; Kapoor, V.; Kati, V.; Katovai, E.; Kessler, M.; Knop, E.; Kolb, A.; Korösi, Á.; Lachat, T.; Lantschner, V.; Le Féon, V.; Lebuhn, G.; Légaré, J.-P.; Letcher, S.G.; Littlewood, N.A.; López-Quintero, C.A.; Louhaichi, M.; Lövei, G.L.; Lucas-Borja, M.E.; Luja, V.H.; Maeto, K.; Magura, T.; Mallari, N.A.; Marin-Spiotta, E.; Marshall, E.J.P.; Martínez, E.; Mayfield, M.M.; Mikusinski, G.; Milder, J.C.; Miller, J.R.; Morales, C.L.; Muchane, M.N.; Muchane, M.; Naidoo, R.; Nakamura, A.; Naoe, S.; Nates-Parra, G.; Navarrete Gutierrez, D.A.; Neuschulz, E.L.; Noreika, N.; Norfolk, O.; Noriega, J.A.; Nöske, N.M.; O'Dea, N.; Oduro, W.; Ofori-Boateng, C.; Oke, C.O.; Osgathorpe, L.M.; Paritsis, J.; Parra-H, A.; Pelegrin, N.; Peres, C.A.; Persson, A.S.; Petanidou, T.; Phalan, B.; Philips, T.K.; Poveda, K.; Power, E.F.; Presley, S.J.; Proença, V.; Quaranta, M.; Quintero, C.; Redpath-Downing, N.A.; Reid, J.L.; Reis, Y.T.; Ribeiro, D.B.; Richardson, B.A.; Richardson, M.J.; Robles, C.A.; Römbke, J.; Romero-Duque, L.P.; Rosselli, L.; Rossiter, S.J.; Roulston, T.H.; Rousseau, L.; Sadler, J.P.; Sáfián, S.; Saldaña-Vázquez, R.A.; Samnegård, U.; Schüepp, C.; Schweiger, O.; Sedlock, J.L.; Shahabuddin, G.; Sheil, D.; Silva, F.A.B.; Slade, E.M.; Smith-Pardo, A.H.; Sodhi, N.S.; Somarriba, E.J.; Sosa, R.A.; Stout, J.C.; Struebig, M.J.; Sung, Y.-H.; Threlfall, C.G.; Tonietto, R.; Tóthmérész, B.; Tscharntke, T.; Turner, E.C.; Tylianakis, J.M.; Vanbergen, A.J.; Vassilev, K.; Verboven, H.A.F.; Vergara, C.H.; Vergara, P.M.; Verhulst, J.; Walker, T.R.; Wang, Y.; Watling, J.I.; Wells, K.; Williams, C.D.; Willig, M.R.; Woinarski, J.C.Z.; Wolf, J.H.D.; Woodcock, B.A.; Yu, D.W.; Zaitsev, A.S.; Collen, B.; Ewers, R.M.; Mace, G.M.; Purves, D.W.; Scharlemann, J.P.W.; Purvis, A. |
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The PREDICTS database: A global database of how local terrestrial biodiversity responds to human impacts |
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2014 |
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Ecology and Evolution |
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Ecology and Evolution |
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4 |
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24 |
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4701-4735 |
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Data sharing; Global change; Habitat destruction; Land use |
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Biodiversity continues to decline in the face of increasing anthropogenic pressures such as habitat destruction, exploitation, pollution and introduction of alien species. Existing global databases of species' threat status or population time series are dominated by charismatic species. The collation of datasets with broad taxonomic and biogeographic extents, and that support computation of a range of biodiversity indicators, is necessary to enable better understanding of historical declines and to project – and avert – future declines. We describe and assess a new database of more than 1.6 million samples from 78 countries representing over 28,000 species, collated from existing spatial comparisons of local-scale biodiversity exposed to different intensities and types of anthropogenic pressures, from terrestrial sites around the world. The database contains measurements taken in 208 (of 814) ecoregions, 13 (of 14) biomes, 25 (of 35) biodiversity hotspots and 16 (of 17) megadiverse countries. The database contains more than 1% of the total number of all species described, and more than 1% of the described species within many taxonomic groups – including flowering plants, gymnosperms, birds, mammals, reptiles, amphibians, beetles, lepidopterans and hymenopterans. The dataset, which is still being added to, is therefore already considerably larger and more representative than those used by previous quantitative models of biodiversity trends and responses. The database is being assembled as part of the PREDICTS project (Projecting Responses of Ecological Diversity In Changing Terrestrial Systems – www.predicts.org.uk). We make site-level summary data available alongside this article. The full database will be publicly available in 2015. The collation of biodiversity datasets with broad taxonomic and biogeographic extents is necessary to understand historical declines and to project – and hopefully avert – future declines. We describe a newly collated database of more than 1.6 million biodiversity measurements from 78 countries representing over 28,000 species, collated from existing spatial comparisons of local-scale biodiversity exposed to different intensities and types of anthropogenic pressures, from terrestrial sites around the world. |
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Centre for Biodiversity and Environment Research, Department of Genetics, Evolution and Environment, University College London, Gower StreetLondon, United Kingdom |
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Export Date: 6 January 2015 |
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EcoFoG @ webmaster @ |
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577 |
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