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Hamadi, A., Borderies, P., Albinet, C., Koleck, T., Villard, L., Ho Tong Minh, D., et al. (2015). Temporal coherence of tropical forests at P-band: Dry and rainy seasons. IEEE Geosci. Remote Sens. Lett., 12(3), 557–561.
Abstract: In this letter, the temporal coherence of tropical forest scattering at P-band is addressed by means of a ground-based experiment. The study is based on the TropiScat campaign in French Guiana, designed to support the Biomass mission, which will be the ESA 7th Earth Explorer mission. For Biomass, temporal coherence is a crucial parameter for coherent processing of polarimetric synthetic aperture radar (SAR) interferometry and SAR tomography in repeat-pass acquisitions. During the experiment, data were continuously collected for six months during both the rainy and dry seasons. For the rain-free days in both seasons, the coherence exhibits a daily cycle showing a high decorrelation during daytime, which is likely due to motion in the canopy. Up to a 20-day baseline, the coherence is much higher in the dry season than in the rainy season (> 0.8). From 20 to 40 days, it presents the same order of magnitude in both seasons [0.6, 0.7]. For larger temporal baselines, it becomes lower in the dry season. The results can be used to assess the long-term coherence of repeat-pass observations over a tropical forest. However, an extension of this study to several years and over other forest spots would be necessary to draw more general conclusions.
Keywords: Biomass mission; forest scattering; ground-based experiment; P-band; range impulse response; temporal coherence
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Dejean, A., & Corbara, B. (2014). Reactions by army ant workers to nestmates having had contact with sympatric ant species. C. R. Biol., 337(11), 642–645.
Abstract: It was recently shown that Pheidole megacephala colonies (an invasive species originating from Africa) counterattack when raided by the army ant, Eciton burchellii. The subsequent contact permits Pheidole cuticular compounds (that constitute the “colony odour”) to be transferred onto the raiding Eciton, which are then not recognised by their colony-mates and killed. Using a simple method for transferring cuticular compounds, we tested if this phenomenon occurs for Neotropical ants. Eciton workers rubbed with ants from four sympatric species were released among their colony-mates. Individuals rubbed with Solenopsis saevissima or Camponotus blandus workers were attacked, but not those rubbed with Atta sexdens, Pheidole fallax or with colony-mates (control lot). So, the chemicals of certain sympatric ant species, but not others, trigger intra-colonial aggressiveness in Eciton. We conclude that prey-ant chemicals might have played a role in the evolution of army ant predatory behaviour, likely influencing prey specialization in certain cases.
Keywords: Army ants Antipredation Colony-mate recognition Eciton Transferring cuticular compounds; Eciton; Formicidae
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Csilléry, K., Lalague, H., Vendramin, G. G., González-Martínez, S. C., Fady, B., & Oddou-Muratorio, S. (2014). Detecting short spatial scale local adaptation and epistatic selection in climate-related candidate genes in European beech (Fagus sylvatica) populations. Molecular Ecology, 23(19), 4696–4708.
Abstract: Detecting signatures of selection in tree populations threatened by climate change is currently a major research priority. Here, we investigated the signature of local adaptation over a short spatial scale using 96 European beech (Fagus sylvatica L.) individuals originating from two pairs of populations on the northern and southern slopes of Mont Ventoux (south-eastern France). We performed both single and multilocus analysis of selection based on 53 climate-related candidate genes containing 546 SNPs. FST outlier methods at the SNP level revealed a weak signal of selection, with three marginally significant outliers in the northern populations. At the gene level, considering haplotypes as alleles, two additional marginally significant outliers were detected, one on each slope. To account for the uncertainty of haplotype inference, we averaged the Bayes factors over many possible phase reconstructions. Epistatic selection offers a realistic multilocus model of selection in natural populations. Here, we used a test suggested by Ohta based on the decomposition of the variance of linkage disequilibrium. Overall populations, 0.23% of the SNP pairs (haplotypes) showed evidence of epistatic selection, with nearly 80% of them being within genes. One of the between gene epistatic selection signals arose between an FST outlier and a nonsynonymous mutation in a drought response gene. Additionally, we identified haplotypes containing selectively advantageous allele combinations which were unique to high or low elevations and northern or southern populations. Several haplotypes contained nonsynonymous mutations situated in genes with known functional importance for adaptation to climatic factors.
Keywords: abiotic stress; budburst phenology; FST outlier; gene network; haplotype; Ohta's test; variance components of linkage disequilibrium
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Lachenaud, P., Rossi, V., Thevenin, J. - M., & Doaré, F. (2015). The “Guiana” genetic group: A new source of resistance to cacao (Theobroma cacao L.) black pod rot caused by Phytophthora capsici. Crop Prot., 67, 91–95.
Abstract: Black pod rot, caused by Stramenopiles of the genus Phytophthora, leads to serious production losses in all cocoa growing zones. In order to reduce the impact of these pests, preference is given to genetic control using resistant varieties, and sources of resistance are actively being sought, particularly in wild cacao trees. Surveys were undertaken in the natural cacao tree populations of south-eastern French Guiana between 1985 and 1995 and an abundant amount of plant material belonging to a particular genetic group, the “Guiana” group, was collected. A great deal of work has shown the merits of this genetic group as a source of resistance to Phytophthora palmivora and megakarya. We describe here the results of a global study to assess the resistance of the 186 clones in the “Guiana” group “core collection” to a Guianese strain of Phytophthora capsici (strain Reg 2-6). This study, which used an efficient methodology (fifteen series of tests on leaf discs and a statistical test adapted to the ordinal nature of the basic data), showed that the “Guiana” genetic group is a major source of resistance to P.capsici. Strain Reg 2-6 proves to be particularly virulent, as the Scavina 6 control, an international reference for resistance to Phytophthora, is not resistant to it. However, 24 clones of the “Guiana” group are, and 92 have proved to be more resistant than Scavina 6, thereby showing the interest of the group in genetically controlling P.capsici.Thus, of the clones in the Guiana group that are more resistant to P.capsici than Scavina 6, some, which are also resistant to P.palmivora and/or Phytophthora megakarya, and also displaying some other notable qualities, could be incorporated into cocoa genetic improvement programmes in countries where P.capsici is rife on cacao trees.
Keywords: Black pod; Cocoa; French guiana; Phytophthora capsici; Resistance; Phytophthora capsici; Theobroma cacao
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Gao, H., Grüschow, S., Barke, J., Seipke, R. F., Hill, L. M., Orivel, J., et al. (2014). Filipins: The first antifungal “weed killers” identified from bacteria isolated from the trap-ant. RSC Adv., 4(100), 57267–57270.
Abstract: Allomerus ants ensure that they have sufficient nitrogen in their diet by trapping and consuming other insects. In order to construct their traps, like the more extensively studied leaf cutter ants, they employ fungal farming. Pest management within these fungal cultures has been speculated to be due to the ants' usage of actinomycetes capable of producing antifungal compounds, analogous to the leafcutter ant mutualism. Here we report the first identification of a series of antifungal compounds, the filipins, and their associated biosynthetic genes isolated from a bacterium associated with this system.
Keywords: Anti-fungal
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Aili, S. R., Touchard, A., Escoubas, P., Padula, M. P., Orivel, J., Dejean, A., et al. (2014). Diversity of peptide toxins from stinging ant venoms. Toxicon, 92, 166–178.
Abstract: Ants (Hymenoptera: Formicidae) represent a taxonomically diverse group of arthropods comprising nearly 13,000 extant species. Sixteen ant subfamilies have individuals that possess a stinger and use their venom for purposes such as a defence against predators, competitors and microbial pathogens, for predation, as well as for social communication. They exhibit a range of activities including antimicrobial, haemolytic, cytolytic, paralytic, insecticidal and pain-producing pharmacologies. While ant venoms are known to be rich in alkaloids and hydrocarbons, ant venoms rich in peptides are becoming more common, yet remain understudied. Recent advances in mass spectrometry techniques have begun to reveal the true complexity of ant venom peptide composition. In the few venoms explored thus far, most peptide toxins appear to occur as small polycationic linear toxins, with antibacterial properties and insecticidal activity. Unlike other venomous animals, a number of ant venoms also contain a range of homodimeric and heterodimeric peptides with one or two interchain disulfide bonds possessing pore-forming, allergenic and paralytic actions. However, ant venoms seem to have only a small number of monomeric disulfide-linked peptides. The present review details the structure and pharmacology of known ant venom peptide toxins and their potential as a source of novel bioinsecticides and therapeutic agents.
Keywords: Ant venom; Chemotaxonomy; Disulfide linkage; Peptides; Venom biochemistry
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Cottet, K., Genta-Jouve, G., Fromentin, Y., Odonne, G., Duplais, C., Laprévote, O., et al. (2014). Comparative LC-MS-based metabolite profiling of the ancient tropical rainforest tree Symphonia globulifera. Phytochemistry, 108, 102–108.
Abstract: In the last few years, several phytochemical studies have been undertaken on the tropical tree Symphonia globulifera leading to the isolation and characterisation of several compounds exhibiting antiparasitic activities against Plasmodium falciparum, Trypanosoma brucei and Leishmania donovani. The comparative LC-MS based metabolite profiling study conducted on the tree led to the identification of compounds originating from specific tissues. The results showed that renewable organs/tissues can be used as the starting material for the production of polycyclic poly-prenylated-acylphloroglucinols, therefore reducing impacts on biodiversity. This study also underlined the lack of knowledge on the secondary metabolites produced by S. globulifera since only a small number of the total detected features were putatively identified using the database of known compounds for the species.
Keywords: Kendrick mass defect; Lc-Ms; Plant organs; Symphonia globulifera; Untargeted metabolomics; Symphonia globulifera
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Réjou-Méchain, M., Muller-Landau, H. C., Detto, M., Thomas, S. C., Le Toan, T., Saatchi, S. S., et al. (2014). Local spatial structure of forest biomass and its consequences for remote sensing of carbon stocks. Biogeosciences, 11(23), 6827–6840.
Abstract: Advances in forest carbon mapping have the potential to greatly reduce uncertainties in the global carbon budget and to facilitate effective emissions mitigation strategies such as REDD+ (Reducing Emissions from Deforestation and Forest Degradation). Though broad-scale mapping is based primarily on remote sensing data, the accuracy of resulting forest carbon stock estimates depends critically on the quality of field measurements and calibration procedures. The mismatch in spatial scales between field inventory plots and larger pixels of current and planned remote sensing products for forest biomass mapping is of particular concern, as it has the potential to introduce errors, especially if forest biomass shows strong local spatial variation. Here, we used 30 large (8-50 ha) globally distributed permanent forest plots to quantify the spatial variability in aboveground biomass density (AGBD in Mg ha-1) at spatial scales ranging from 5 to 250 m (0.025-6.25 ha), and to evaluate the implications of this variability for calibrating remote sensing products using simulated remote sensing footprints. We found that local spatial variability in AGBD is large for standard plot sizes, averaging 46.3% for replicate 0.1 ha subplots within a single large plot, and 16.6% for 1 ha subplots. AGBD showed weak spatial autocorrelation at distances of 20-400 m, with autocorrelation higher in sites with higher topographic variability and statistically significant in half of the sites. We further show that when field calibration plots are smaller than the remote sensing pixels, the high local spatial variability in AGBD leads to a substantial “dilution” bias in calibration parameters, a bias that cannot be removed with standard statistical methods. Our results suggest that topography should be explicitly accounted for in future sampling strategies and that much care must be taken in designing calibration schemes if remote sensing of forest carbon is to achieve its promise.
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Sist, P., Rutishauser, E., Peña-Claros, M., Shenkin, A., Herault, B., Blanc, L., et al. (2015). The Tropical managed forests Observatory: A research network addressing the future of tropical logged forests. Appl. Veg. Sci., 18(1), 171–174.
Abstract: While attention on logging in the tropics has been increasing, studies on the long-term effects of silviculture on forest dynamics and ecology remain scare and spatially limited. Indeed, most of our knowledge on tropical forests arises from studies carried out in undisturbed tropical forests. This bias is problematic given that logged and disturbed tropical forests are now covering a larger area than the so-called primary forests. A new network of permanent sample plots in logged forests, the Tropical managed Forests Observatory (TmFO), aims to fill this gap by providing unprecedented opportunities to examine long-term data on the resilience of logged tropical forests at regional and global scales. TmFO currently includes 24 experimental sites distributed across three tropical regions, with a total of 490 permanent plots and 921 ha of forest inventories. To improve our knowledge of the resilience of tropical logged forests, 20 research institutes are now collaborating on studies on the effects of logging on forest structure, productivity, biodiversity and carbon fluxes at large spatial and temporal scales. These studies are carried out in the Tropical managed Forests Observatory (TmFO), an international network including 24 sites and 490 permanent sample plots across South America, Africa and South East Asia.
Keywords: Biodiversity; Carbon cycle; Climate change; Ecosystem resilience; Logging; Silviculture; Tropical forests; Tropical managed forests Observatory
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Hénaut, Y., Corbara, B., Pélozuelo, L., Azémar, F., Céréghino, R., Herault, B., et al. (2014). A tank bromeliad favors spider presence in a neotropical inundated forest. PLoS ONE, 9(12), e114592.
Abstract: Tank bromeliads are good models for understanding how climate change may affect biotic associations. We studied the relationships between spiders, the epiphytic tank bromeliad, Aechmea bracteata, and its associated ants in an inundated forest in Quintana Roo, Mexico, during a drought period while, exceptionally, this forest was dry and then during the flooding that followed. We compared spider abundance and diversity between “Aechmea-areas” and “control areas” of the same surface area. We recorded six spider families: the Dipluridae, Ctenidae, Salticidae, Araneidae, Tetragnathidae and Linyphiidae among which the funnel-web tarantula, Ischnothele caudata, the only Dipluridae noted, was the most abundant. During the drought period, the spiders were more numerous in the Aechmea areas than in the control areas, but they were not obligatorily associated with the Aechmea.
During the subsequent flooding, the spiders were concentrated in the A. bracteata patches, particularly those sheltering an ant colony. Also, a kind of specificity existed between certain spider taxa and ant species, but varied between the drought period and subsequent flooding. We conclude that climatic events modulate the relationship between A. bracteata patches and their associated fauna. Tank bromeliads, previously considered only for their ecological importance in supplying food and water during drought, may also be considered refuges for spiders during flooding. More generally, tank bromeliads have an important role in preserving non-specialized fauna in inundated forests.
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