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Clair, B., Déjardin, A., Pilate, G., & Alméras, T. (2018). Is the G-layer a tertiary cell wall? Frontiers in Plant Science, 9, 623.
Keywords: Flax; G-layer; Gelatinous layer; Maturation stress; Secondary cell wall; Tension wood; Tertiary cell wall
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Ziegler, C., Dusenge, M. E., Nyirambangutse, B., Zibera, E., Wallin, G., & Uddling, J. (2020). Contrasting Dependencies of Photosynthetic Capacity on Leaf Nitrogen in Early- and Late-Successional Tropical Montane Tree Species. Front. Plant Sci., 11, 500479.
Abstract: Differences in photosynthetic capacity among tree species and tree functional types are currently assumed to be largely driven by variation in leaf nutrient content, particularly nitrogen (N). However, recent studies indicate that leaf N content is often a poor predictor of variation in photosynthetic capacity in tropical trees. In this study, we explored the relative importance of area-based total leaf N content (Ntot) and within-leaf N allocation to photosynthetic capacity versus light-harvesting in controlling the variation in photosynthetic capacity (i.e. Vcmax, Jmax) among mature trees of 12 species belonging to either early (ES) or late successional (LS) groups growing in a tropical montane rainforest in Rwanda, Central Africa. Photosynthetic capacity at a common leaf temperature of 25˚C (i.e. maximum rates of Rubisco carboxylation, Vcmax25 and of electron transport, Jmax25) was higher in ES than in LS species (+ 58% and 68% for Vcmax25 and Jmax25, respectively). While Ntot did not significantly differ between successional groups, the photosynthetic dependency on Ntot was markedly different. In ES species, Vcmax25 was strongly and positively related to Ntot but this was not the case in LS species. However, there was no significant trade-off between relative leaf N investments in compounds maximizing photosynthetic capacity versus compounds maximizing light harvesting. Both leaf dark respiration at 25˚C (+ 33%) and, more surprisingly, apparent photosynthetic quantum yield (+ 35%) was higher in ES than in LS species. Moreover, Rd25 was positively related to Ntot for both ES and LS species. Our results imply that efforts to quantify carbon fluxes of tropical montane rainforests would be improved if they considered contrasting within-leaf N allocation and photosynthetic Ntot dependencies between species with different successional strategies. © Copyright © 2020 Ziegler, Dusenge, Nyirambangutse, Zibera, Wallin and Uddling.
Keywords: allocation; early successional; late successional; nitrogen; photosynthesis; tropical montane forests
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Heu, K., Romoli, O., Schonbeck, J. C., Ajenoe, R., Epelboin, Y., Kircher, V., et al. (2021). The Effect of Secondary Metabolites Produced by Serratia marcescens on Aedes aegypti and Its Microbiota. Frontiers in Microbiology, 12, 645701.
Abstract: Serratia marcescens is a bacterial species widely found in the environment, which very efficiently colonizes mosquitoes. In this study, we isolated a red-pigmented S. marcescens strain from our mosquito colony (called S. marcescens VA). This red pigmentation is caused by the production of prodigiosin, a molecule with antibacterial properties. To investigate the role of prodigiosin on mosquito- S. marcescens interactions, we produced two white mutants of S. marcescens VA by random mutagenesis. Whole genome sequencing and chemical analyses suggest that one mutant has a nonsense mutation in the gene encoding prodigiosin synthase, while the other one is deficient in the production of several types of secondary metabolites including prodigiosin and serratamolide. We used our mutants to investigate how S. marcescens secondary metabolites affect the mosquito and its microbiota. Our in vitro tests indicated that S. marcescens VA inhibits the growth of several mosquito microbiota isolates using a combination of prodigiosin and other secondary metabolites, corroborating published data. This strain requires secondary metabolites other than prodigiosin for its proteolytic and hemolytic activities. In the mosquito, we observed that S. marcescens VA is highly virulent to larvae in a prodigiosin-dependent manner, while its virulence on adults is lower and largely depends on other metabolites
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Chanson, A., Moreau, C. S., & Duplais, C. (2021). Assessing Biosynthetic Gene Cluster Diversity of Specialized Metabolites in the Conserved Gut Symbionts of Herbivorous Turtle Ants. Frontiers in Microbiology, 12, 678100.
Abstract: Cephalotes are herbivorous ants (>115 species) feeding on low-nitrogen food sources, and they rely on gut symbionts to supplement their diet by recycling nitrogen food waste into amino acids. These conserved gut symbionts, which encompass five bacterial orders, have been studied previously for their primary nitrogen metabolism; however, little is known about their ability to biosynthesize specialized metabolites which can play a role in bacterial interactions between communities living in close proximity in the gut. To evaluate the biosynthetic potential of their gut symbionts, we mine 14 cultured isolate genomes and gut metagenomes across 17 Cephalotes species to explore the biodiversity of biosynthetic gene clusters (BGCs) producing specialized metabolites. The diversity of BGCs across Cephalotes phylogeny was analyzed using sequence similarity networking and BGC phylogenetic reconstruction. Our results reveal that the conserved gut symbionts involved in the nutritional symbiosis possess 80% of all the 233 BGCs retrieved in this work. Furthermore, the phylogenetic analysis of BGCs reveals different patterns of distribution, suggesting different mechanisms of conservation. A siderophore BGC shows high similarity in a single symbiont across different ant host species, whereas a BGC encoding the production of non-ribosomal peptides (NRPs) found different symbionts within a single host species. Additionally, BGCs were abundant in four of the five bacterial orders of conserved symbionts co-occurring in the hindgut. However, one major symbiont localized alone in the midgut lack BGCs. Because the spatial isolation prevents direct interaction with other symbionts, this result supports the idea that BGCs are maintained in bacteria living in close proximity but are dispensable for an alone-living symbiont. These findings together pave the way for studying the mechanisms of BGC conservation and evolution in gut bacterial genomes associated with Cephalotes. This work also provides a genetic background for further study, aiming to characterize bacterial specialized metabolites and to understand their functional role in multipartite mutualisms between conserved gut symbionts and Cephalotes turtle ants.
Keywords: insect-microbe mutualism, ants, metagemonic, biosynthetic gene cluster, gut bacteria, Cephalotes
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Bréchet, L., Courtois, E. A., Saint-Germain, T., Janssens, I. A., Asensio, D., Ramirez-Rojas, I., et al. (2019). Disentangling Drought and Nutrient Effects on Soil Carbon Dioxide and Methane Fluxes in a Tropical Forest. Front. Environ. Sci., 7(180).
Abstract: Tropical soils are a major contributor to the balance of greenhouse gas (GHG) fluxes in the atmosphere. Models of tropical GHG fluxes predict that both the frequency of drought events and changes in atmospheric deposition of nitrogen (N) will significantly affect dynamics of soil carbon dioxide (CO2) and methane (CH4) production and consumption. In this study, we examined the combined effect of a reduction in precipitation and an increase in nutrient availability on soil CO2 and CH4 fluxes in a primary French Guiana tropical forest. Drought conditions were simulated by intercepting precipitation falling through the forest canopy with tarpaulin roofs. Nutrient availability was manipulated through application of granular N and/or phosphorus (P) fertilizer to the soil. Soil water content (SWC) below the roofs decreased rapidly and stayed at continuously low values until roof removal, which as a consequence roughly doubled the duration of the dry season. After roof removal, SWC slowly increased but remained lower than in the control soils even after 2.5 months of wet-season precipitation. We showed that drought-imposed reduction in SWC decreased the CO2 emissions (i.e., CO2 efflux), but strongly increased the CH4 emissions. N, P, and N × P (i.e., NP) additions all significantly increased CO2 emission but had no effect on CH4 fluxes. In treatments where both fertilization and drought were applied, the positive effect of N, P, and NP fertilization on CO2 efflux was reduced. After roof removal, soil CO2 efflux was more resilient in the control plots than in the fertilized plots while there was only a modest effect of roof removal on soil CH4 fluxes. Our results suggest that a combined increase in drought and nutrient availability in soil can locally increase the emissions of both CO2 and CH4 from tropical soils, for a long term.
Keywords: carbon dioxide; drought; fertilization; methane; nitrogen; phosphorus; soil GHG fluxes; tropical forest
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Richard-Hansen, C., Davy, D., Longin, G., Gaillard, L., Renoux, F., Grenand, P., et al. (2019). Hunting in French Guiana Across Time, Space and Livelihoods. Frontiers in Ecology and Evolution, 7, 289.
Abstract: Hunting sustainability in Amazonian ecosystems is a key challenge for modern stakeholders. Predictive models have evolved from first mostly biological data-based to more recent modelling including human behavior. We analyze here the hunting data collected in French Guiana through a panel of indices aiming at drawing the puzzle of parameters influencing hunting activity and impact in various socio ecological conditions across the country. Data were collected from five different study sites differing in cultural origins and remoteness from market economy, and over a ten years period. Most indices show an impact on wildlife populations, and using a full set of indicators allowed us to better understand some underlying mechanisms that lead to a community’s hunting profile. The results showed that there are noticeable differences between the study sites in the practices and the ways hunters face the changes in environment and resources availability
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Picard, N., Mortier, F., Ploton, P., Liang, J., Derroire, G., Bastin, J. - F., et al. (2021). Using Model Analysis to Unveil Hidden Patterns in Tropical Forest structures. Frontiers in Ecology and Evolution, 9, 599200.
Abstract: When ordinating plots of tropical rain forests using stand-level structural attributes such as biomass, basal area and the number of trees in different size classes, two patterns often emerge: a gradient from poorly to highly stocked plots and high positive correlations between biomass, basal area and the number of large trees. These patterns are inherited from the demographics (growth, mortality and recruitment) and size allometry of trees and tend to obscure other patterns, such as site differences among plots, that would be more informative for inferring ecological processes. Using data from 133 rain forest plots at nine sites for which site differences are known, we aimed to filter out these patterns in forest structural attributes to unveil a hidden pattern. Using a null model framework, we generated the anticipated pattern inherited from individual allometric patterns. We then evaluated deviations between the data (observations) and predictions of the null model. Ordination of the deviations revealed site differences that were not evident in the ordination of observations. These sites differences could be related to different histories of large-scale forest disturbance. By filtering out patterns inherited from individuals, our model analysis provides more information on ecological processes
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Brouard, O., Céréghino, R., Corbara, B., Leroy, C., Pelozuelo, L., Dejean, A., et al. (2012). Understorey environments influence functional diversity in tank-bromeliad ecosystems. Freshw. Biol., 57(4), 815–823.
Abstract: A substantial fraction of the freshwater available in neotropical forests is impounded within the rosettes of bromeliads that form aquatic islands in a terrestrial matrix. The ecosystem functioning of bromeliads is known to be influenced by the composition of the contained community but it is not clear whether bromeliad food webs remain functionally similar against a background of variation in the understorey environment. We considered a broad range of environmental conditions, including incident light and incoming litter, and quantified the distribution of a very wide range of freshwater organisms (from viruses to macroinvertebrates) to determine the factors that influence the functional structure of bromeliad food webs in samples taken from 171 tank-bromeliads. We observed a gradient of detritus-based to algal-based food webs from the understorey to the overstorey. Algae, rotifers and collector and predatory invertebrates dominated bromeliad food webs in exposed areas, whereas filter-feeding insects had their highest densities in shaded forest areas. Viruses, bacteria and fungi showed no clear density patterns. Detritus decomposition is mainly due to microbial activity in understorey bromeliads where filter feeders are the main consumers of microbial and particulate organic matter (POM). Algal biomass may exceed bacterial biomass in sun-exposed bromeliads where amounts of detritus were lower but functional diversity was highest. Our results provide evidence that tank-bromeliads, which grow in a broad range of ecological conditions, promote aquatic food web diversity in neotropical forests. Moreover, although bromeliad ecosystems have been categorised as detritus-based systems in the literature, we show that algal production can support a non-detrital food web in these systems. © 2012 Blackwell Publishing Ltd.
Keywords: Food webs; French Guiana; Invertebrates; Microorganisms; Phytotelmata; Rainforest
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Dezerald, O., Céréghino, R., Corbara, B., Dejean, A., & Leroy, C. (2015). Functional trait responses of aquatic macroinvertebrates to simulated drought in a Neotropical bromeliad ecosystem. Freshwater Biology, 60(9), 1917–1929.
Abstract: The duration of the dry seasons in south-eastern Amazonia is expected to increase. Little is known of how freshwater assemblages respond to drought in the humid rainforests and of the extent to which they resist the absence of rainfall before the collapse of the system. We manipulated rainshelters over tank-forming bromeliads (i.e. the interlocking leaf axils of these plants form wells that collect rainwater) to simulate an exceptionally long dry period (49 days, compared with a 10-year mean ± SD annual maximum number of 17 ± 5.3 days without rainfall at the study site) and then a rewetting period. By sampling weekly over 3 months, we followed the dynamics of the representation of abundance-weighted traits in invertebrate assemblages in these treatment plants and in a control group. The functional structure of assemblages was drought resistant until the water volume in the bromeliad pools dropped by 90%, when there was a sudden shift in the functional trait structure due to the loss of most populations except the drought-resistant culicids. Traits related to life history, body size and preferred food showed significant responses to drought. There was a convergence in the functional traits of species surviving in dry plants, strengthening the idea that environmental filtering, rather than stochasticity, determines the functional trajectory of aquatic assemblages during drought. At the end of the dry period, samples of the detritus potentially containing drought-resistant eggs/cysts (and eventually live larvae) were taken from the dry plants and rewetted in the laboratory, allowing us to distinguish resistant species from those requiring recolonisation via subsequent oviposition by adults from elsewhere. Patches of water-filled bromeliads persisting in the area provided the most important pool of colonists, and communities returned to the pre-disturbance state within 1-2 weeks of rewetting. Our results suggest that the functional trait structure of invertebrate assemblages in bromeliads could remain stable under scenarios of precipitation change that would triple the duration of current dry periods at a local scale. Future experiments should evaluate how environmental factors might alter the tipping point between resistance to drought and a collapse in ecosystem processes. © 2015 John Wiley & Sons Ltd.
Keywords: Food webs; Precipitations; Rainforests; Resistance/resilience; Tipping point
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Dezerald, O., Leroy, C., Corbara, B., Dejean, A., Talaga, S., & Céréghino, R. (2017). Environmental drivers of invertebrate population dynamics in Neotropical tank bromeliads. Freshw Biol, 62(2), 229–242.
Abstract: Tank bromeliads form a conspicuous, yet neglected freshwater habitat in Neotropical forests. Recent studies driven by interests in medical entomology, fundamental aspects of bromeliad ecology and experimental research on food webs have, however, prompted increasing interest in bromeliad aquatic ecosystems. As yet, there is nothing in the literature about the life histories and environmental drivers of invertebrate population dynamics in tank bromeliads.
Based on fortnightly samples taken over one year, size frequency plots and individual dry masses allowed us to establish the life cycles and growth rates of the dominant aquatic invertebrates in a common bromeliad species of French Guiana. Linear mixed-effect models and Mantel tests were used to predict changes in density, biomass, and growth rates in relation to temperature, rainfall, humidity and detrital resources.
Annual variations in invertebrate densities and biomasses could be described according to three types of distribution: unimodal, bimodal or almost constant. Despite seasonal variations, precipitation, temperature, relative humidity and detritus concentration accounted significantly for changes in density and biomass, but we found no significant responses in growth rates of most invertebrate species. Species rather displayed non-seasonal life cycles with overlapping cohorts throughout the year. There was also a trend for delayed abundance peaks among congeneric species sharing similar functional traits, suggesting temporal partitioning of available resources.
Beyond novel knowledge, quantitative information on life histories is important to predict food-web dynamics under the influence of external forcing and self-organisation. Our results suggest that changes in species distribution that will affect population dynamics through biotic interactions in space and/or time could have greater effects on food webs and ecosystem functioning than changes in environmental factors per se.
Keywords: food webs; freshwater invertebrates; growth rate; life history; rainforest
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