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Casella, T.M.; Eparvier, V.; Mandavid, H.; Bendelac, A.; Odonne, G.; Dayan, L.; Duplais, C.; Espindola, L.S.; Stien, D. |
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Title |
Antimicrobial and cytotoxic secondary metabolites from tropical leaf endophytes: Isolation of antibacterial agent pyrrocidine C from Lewia infectoria SNB-GTC2402 |
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Journal Article |
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Year |
2013 |
Publication |
Phytochemistry |
Abbreviated Journal |
Phytochemistry |
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96 |
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370-377 |
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Antimicrobials; Cytotoxic metabolites; Functional chemodiversity; Leaf endophytes; Lewia; Pyrrocidine C |
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Because of the symbiotic nature of endophytes, this survey aims to investigate the probability of discovering antibacterial, antifungal and cytotoxic activities in leaf endophytic microbes. We isolated 138 cultivable microbes (121 fungi, 3 bacteria and 14 unidentified or unknown microbes) from 24 plant species, a significant relative proportion of which exhibited antifungal and cytotoxic potential against Candida albicans ATCC 10213 and the human cell lines KB (uterine cervical carcinoma), MDA-MB-435 (melanoma), and MRC5 (normal human lung fibroblasts). Three active fungal extracts were fractionated, resulting in the isolation of eight compounds. Seven had been described in the literature including the following: acremonisol A, semicochliodinol A, cochliodinol, griseofulvin, pyrenocin A, novae zelandin A and alterperylenol. A previously unreported compound named pyrrocidine C was isolated from Lewia infectoria SNB-GTC2402 and identified by spectroscopic analysis. As in pyrrocidines A and B, this compound is a cis-substituted decahydrofluorene with a quaternary carbon at C-5 and opposite stereochemistry at C-8 corresponding to C-6 of pyrrocidines A and B.© 2013 Elsevier Ltd. All rights reserved. |
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CNRS Guyane, USR 3456, 2 Avenue Gustave Charlery, 97300 Cayenne, France |
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00319422 (Issn) |
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Export Date: 6 December 2013; Source: Scopus; Coden: Pytca; doi: 10.1016/j.phytochem.2013.10.004; Language of Original Document: English; Correspondence Address: Espindola, L.S.; Laboratório de Farmacognosia, Universidade de Brasília, Brasília, DF, Brazil; email: darvenne@unb.br; References: Arnold, A.E., Mejia, L.C., Kyllo, D., Rojas, E.I., Maynard, Z., Robbins, N., Herre, E.A., Fungal endophytes limit pathogen damage in a tropical tree (2003) Proceedings of the National Academy of Sciences of the United States of America, 100 (26), pp. 15649-15654. , DOI 10.1073/pnas.2533483100; Asahina, A., Tada, Y., Nakamura, K., Tamaki, K., Colchicine and griseofulvin inhibit VCAM-1 expression on human vascular endothelial cells – Evidence for the association of VCAM-1 expression with microtubules (2001) Journal of Dermatological Science, 25 (1), pp. 1-9. , DOI 10.1016/S0923-1811(00)00097-9, PII S0923181100000979; Bacon, C.W., White, J.F., (2000) Microbial Endophytes, , Marcel Dekker Inc. New York; Brewer, D., Jerram, W.A., Meiler, D., Taylor, A., The toxicity of cochliodinol, an antibiotic metabolite of Chaetomium spp (1970) Can. J. Microbiol., 16, pp. 433-440; Cafeu, M.C., Silva, G.H., Teles, H.L., Bolzani, V.D.S., Araujo, A.R., Young, M.C.M., Pfenning, L.H., Antifungal compounds of Xylaria sp., an endophytic fungus isolated from Palicourea marcgravii (Rubiaceae) (2005) Quimica Nova, 28 (6), pp. 991-995. , http://www.scielo.br/pdf/qn/v28n6/26827.pdf; Chooi, Y.-H., Cacho, R., Tang, Y., Identification of the viridicatumtoxin and Griseofulvin gene clusters from Pennicillium aethiopicum (2010) Chem. Biol., 17, pp. 483-494; Christensen, K.B., Van Klink, J.W., Weavers, R.T., Larsen, T.O., Andersen, B., Phipps, R.K., Novel chemotaxonomic markers of the Alternaria infectoria species-group (2005) Journal of Agricultural and Food Chemistry, 53 (24), pp. 9431-9435. , DOI 10.1021/jf0513213; Clay, K., Holah, J., Fungal endophyte symbiosis and plant diversity in successional fields (1999) Science, 285 (5434), pp. 1742-1744. , DOI 10.1126/science.285.5434.1742; Debbab, A., Hassan, A.A., Edrada-Ebel, R.A., Müller, W.E.G., Mosaddak, M., Hakiki, A., Ebel, R., Proksch, P., Bioactive secondary metabolites from the endophytic fungus Chaetomium sp. Isolated from Salvia officinalis growing in Morocco (2009) Biotechnol. Agron. Soc. Environ., 13, pp. 229-234; Fredenhagen, A., Petersen, F., Tintelnot-Blomley, M., Rosel, J., Mett, H., Hug, P., Semicochliodinol A and B: Inhibitors of HIV-1 protease and EGF-R protein tyrosine kinase related to asterriquinones produced by the fungus Chrysosporium merdarium (1997) Journal of Antibiotics, 50 (5), pp. 395-401; He, H., Yang, H.Y., Bigelis, R., Solum, E.H., Greenstein, M., Carter, G.T., Pyrrocidines A and B, new antibiotics produced by a filamentous fungus (2002) Tetrahedron Letters, 43 (9), pp. 1633-1636. , DOI 10.1016/S0040-4039(02)00099-0, PII S0040403902000990; Ichihara, A., Murakami, K., Sakamura, S., Synthesis of pyrenocines A, B and pyrenochaetic acid A (1987) Tetrahedron, 43, pp. 5245-5250; Isaka, M., Rugseree, N., Maithip, P., Kongsaeree, P., Prabpai, S., Thebtaranonth, Y., Hirsutellones A-E, antimycobacterial alkaloids from the insect pathogenic fungus Hirsutella nivea BCC 2594 (2005) Tetrahedron, 61 (23), pp. 5577-5583. , DOI 10.1016/j.tet.2005.03.099, PII S0040402005005843; Jones, K.E., Patel, N.G., Levy, M.A., Storeygard, A., Balk, D., Gittleman, J.L., Daszak, P., Global trends in emerging infectious diseases (2008) Nature, 451 (7181), pp. 990-993. , DOI 10.1038/nature06536, PII NATURE06536; Kingsland, S.R., Barrow, R.A., Identification of chaetoviridin e from a cultured microfungus, Chaetomium sp. and structural reassignment of chaetoviridins B and D (2009) Aust. J. Chem., 62, pp. 269-274; Lee, J.S., Ko, K.S., Jung, H.S., Phylogenetic analysis of Xylaria based on nuclear ribosomal ITS1-5.8S-ITS2 sequences (2000) FEMS Microbiology Letters, 187 (1), pp. 89-93. , DOI 10.1016/S0378-1097(00)00181-6, PII S0378109700001816; Li, X.-W., Eara, A., Nay, B., Hirsutellones and beyond: Figuring out the biological and synthetic logics toward chemical complexity in fungal PKS-NRPS compounds (2013) Nat. Prod. Rep., 30, pp. 765-782; Mousa, W.K., Raizada, M.N., The diversity of anti-microbial secondary metabolites produced by fungal endophytes: An interdisciplinary perspective (2013) Front. Microbiol., 4 (65), pp. 1-18; Nebel, G., Dragsted, J., Vanclay, J.K., Structure and floristic composition of flood plain forests in the Peruvian Amazon II. The understorey of restinga forests (2001) Forest Ecology and Management, 150 (1-2), pp. 59-77. , DOI 10.1016/S0378-1127(00)00681-2, PII S0378112700006812; Nirma, C., Eparvier, V., Stien, D., Antifungal agents from Pseudallescheria boydii SNB-CN73 isolated from a Nasutitermes sp termite (2013) J. Nat. Prod., 76, pp. 988-991; Okuno, T., Natsume, I., Sawai, K., Structure of antifungal and phytotoxic pigments produced by Alternaria Sps (1983) Tetrahedron Letters, 24 (50), pp. 5653-5656. , DOI 10.1016/S0040-4039(00)94165-0; Pontius, A., Mohamed, I., Krick, A., Kehraus, S., Konig, G.M., Aromatic polyketides from marine algicolous fungi (2008) Journal of Natural Products, 71 (2), pp. 272-274. , DOI 10.1021/np0704710; Priest, F., Systematics and ecology of Bacillus (1993) Bacillus Subtilis and Other Gram-positive Bacteria, Biochemistry, Physiology, and Molecular Genetics, pp. 3-16. , A.L. Sonenshein, J.A. Hoch, R. Losick, ASM Press Washington; Rodrigues, A.M.S., Theodoro, P.N.E.T., Basset, C., Silva, M.R.R., Beauchêne, J., Espindola, L.S., Stien, D., Search for antifungal compounds from the wood of durable tropical trees (2010) J. Nat. Prod., 73, pp. 1706-1707; Rosenblueth, M., Martinez-Romero, E., Bacterial endophytes and their interactions with hosts (2006) Molecular Plant-Microbe Interactions, 19 (8), pp. 827-837. , DOI 10.1094/MPMI-19-0827; Strobel, G.A., Endophytes as sources of bioactive products (2003) Microbes and Infection, 5 (6), pp. 535-544. , DOI 10.1016/S1286-4579(03)00073-X; Tempête, C., Werner, G.H., Favre, F., Rojas, A., Langlois, N., In vitro cytostatic activity of 9-demethoxyporothramycin B (1995) Eur. J. Med. Chem., 30, pp. 647-650; Weber, R.W.S., Stenger, E., Meffert, A., Hahn, M., Brefeldin A production by Phoma medicaginis in dead pre-colonized plant tissue: A strategy for habitat conquest? (2004) Mycological Research, 108 (6), pp. 662-671. , DOI 10.1017/S0953756204000243; White, T.J., Bruns, T., Lee, S., Taylor, J., Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics (1990) PCR Protocols. A Guide to Methods and Applications, pp. 315-322. , M.A. Innis, D.H. Gelfand, J.J. Shinsky, T.J. White, Academic Press San Diego; Zhang, Z., Schwartz, S., Wagner, L., Miller, W., A greedy algorithm for aligning DNA sequences (2000) Journal of Computational Biology, 7 (1-2), pp. 203-214. , DOI 10.1089/10665270050081478; Zhang, X.X., Li, C.J., Nan, Z.B., Matthew, C., Neotyphodium endophyte increases Achnatherum inebrians (drunken horse grass) resistance to herbivores and seed predators (2011) Weed Res., 52, pp. 70-78 |
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EcoFoG @ webmaster @ |
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515 |
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Mony, R.; Dejean, A.; Bilong, C.F.B.; Kenne, M.; Rouland-Lefèvre, C. |
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Title |
Melissotarsus ants are likely able to digest plant polysaccharides |
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Journal Article |
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2013 |
Publication |
Comptes Rendus – Biologies |
Abbreviated Journal |
C. R. Biol. |
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336 |
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10 |
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500-504 |
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Ant-plant interactions; Degradation of plant material; Enzymatic activity; Melissotarsus ants |
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Melissotarsus ants have an extremely specialized set of behaviours. Both workers and gynes tunnel galleries in their host tree bark. Workers walk with their mesothoracic legs pointing upwards and tend Diaspididae hemiptera for their flesh. The ants use their forelegs to plug the galleries with silk that they secrete themselves. We hypothesised that the ants' energetic needs for nearly constant gallery digging could be satisfied through the absorption of host tree tissues; so, using basic techniques, we examined the digestive capacities of workers from two species. We show that workers are able to degrade oligosaccharides and heterosides as well as, to a lesser degree, polysaccharides. This is one of the rare reports on ants able to digest plant polysaccharides other than starch. © 2013 Académie des sciences. |
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IRD, UMR BIOEMCO-IBIOS, 32, rue Henri-Varagnat, 93143 Bondy cedex, France |
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Export Date: 6 December 2013; Source: Scopus; Coden: Crboc; doi: 10.1016/j.crvi.2013.08.003; Language of Original Document: English; Correspondence Address: Dejean, A.; Université de Toulouse, UPS, Ecolab, 118, route de Narbonne, 31062 Toulouse, France; email: alain.dejean@wanadoo.fr; References: Hölldobler, B., Wilson, E.O., (1990) The Ants, , Harvard University Press Cambridge, MA, USA 730 p; Duchesne, L.C., Larson, D.W., Cellulose and the evolution of plant life (1989) BioScience, 39, pp. 238-241; Watanabe, H., Tokuda, G., Cellulolytic Systems in Insects (2010) Annu. Rev. Entomol., 55, pp. 609-632; Wenzel, M., Schonig, I., Berchtold, M., Kampfer, P., König, K., Aerobic and facultatively anaerobic cellulolytic bacteria from the gut of the Termite Zootermopsis angusticollis (2002) J. Appl. Microbiol., 92, pp. 32-40; Brune, A., Microbial symbioses in the digestive tract of lower termites (2011) Beneficial Microorganisms in Multicellular Life Forms, pp. 3-25. , E. Rosenberg, U. Gophna, Heidelberg Springer; Tokuda, G., Watanabe, H., Hidden cellulases in termites: Revision of an old hypothesis (2007) Biol. Lett., 3, pp. 336-339; Nobre, T., Aanen, D.K., Fungiculture or termite husbandry? The ruminant hypothesis (2012) Insects, 3, pp. 307-323; Zientz, E., Feldhaar, H., Stoll, S., Gross, R., Insights into the microbial world associated with ants (2005) Arch. Microbiol., 184, pp. 199-206; Aylward, F., Burnum, K.E., Scott, J.J., Suen, G., Tringe, S.G., Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens (2012) ISME J., pp. 1-14; Cook, S.C., Davidson, D.W., Nutritional and functional biology of exudate-feeding ants (2006) Entomol. Exp. Appl., 118, pp. 1-10; He, H., Chen, Y., Zhang, Y., Wei, C., Bacteria associated with gut lumen of Camponotus japonicus Mayr (2011) Environ. Entomol., 40, pp. 1405-1409; Blochmann, F., Über das Vorkommen von bakterienähnlichen Gebilden in den Geweben und Eiern verschiedener Insekten (1892) Zentbl. Bakteriol., 11, pp. 234-240; Feldhaar, H., Straka, J., Krischke, M., Berthold, K., Stoll, S., Nutritional upgrading for omnivorous carpenter ants by the endosymbiont Blochmannia (2007) BMC Biol., 5, p. 48; De Souza, D.J., Bézier, A., Depoix, D., Drezen, J.M., Lenoir, A., Blochmannia endosymbionts improve colony growth and immune defence in the ant Camponotus fellah (2009) BMC Microbiol., 9, p. 29; Van Borm, S., Buschinger, A., Boomsma, J.J., Billen, J., Tetraponera ants have gut symbionts related to nitrogen-fixing root-nodule bacteria (2002) Proc. R. Soc. Lond. B., 269, pp. 2023-2027; Eilmus, S., Heil, M., Bacterial associates of arboreal ants and their putative functions in an obligate ant-plant mutualism (2009) Appl. Env. Microbiol., 75, pp. 4324-4332; Russell, J.A., Moreau, C.S., Goldman-Huertas, B., Fujiwara, M., Lohman, D.J., Pierce, N.E., Bacterial gut symbionts are tightly linked with the evolution of herbivory in ants (2009) Proc. Natl. Acad. Sci. USA, 106, pp. 21236-21241; Delage-Darchen, B., Une fourmi de Côte d'Ivoire: Melissotarsus titubans Del., N. Sp. (1972) Insect. Soc., 19, pp. 213-226; Prins, A.J., Ben-Dov, Y., Rust, D.J., A new observation on the association between ants (Hymenoptera: Formicidae) and armoured scale insects (Homoptera: Diaspididae) (1975) J. Entomol. Soc. S. Afr., 38, pp. 211-216; Mony, R., Kenne, M., Dejean, A., (2002) Biology and Ecology of Pest Ants of the Genus Melissotarsus (Formicidae: Myrmicinae), with Special Reference to Tropical Fruit Tree Attacks, Sociobiology, 40, pp. 645-654; Mony, R., Fisher, B.L., Kenne, M., Tindo, M., Dejean, A., Behavioural ecology of bark-digging ants of the genus Melissotarsus (2007) Funct. Ecosyst. Commun., 1, pp. 121-128; Fisher, B.L., Robertson, H.G., Silk production by adult workers of the ant Melissotarsus emeryi (Hymenoptera, Formicidae) in South African fynbos (1999) Insect. Soc., 46, pp. 78-83; Sanson, G., The biomechanics of browsing and grazing (2006) Am. J. Bot., 93, pp. 1531-1545; Clissold, F., Sanson, G.D., Read, J., The paradoxical effects nutrient ratios and supply rates on an outbreaking insect herbivore, the Australian plague locust (2006) J. Anim. Ecol., 75, pp. 1000-1013; Cannon, C.A., (1998) Nutritional Ecology of the Carpenter Ant Camponotus Pennsylvanicus (De Geer): Macronutrient Preference and Particle Consumption, , (PhD thesis) Blacsburg VA; Eisner, T., A comparative morphological study of the proventriculus of ants (Hymenoptera, Formicidae) (1957) Bull. Mus. Comp. Zool., 116, pp. 441-490; Caetano, F.H., Can we use the digestive tract for phyllogenetic studies in ants (1990) Social Insects and the Environment, pp. 321-322. , G.K. Veeresh, B. Mallik, C.A. Viraktamath, Oxford & IBH publishing co. New Dehli; Delage, B., Recherches sur l'alimentation des fourmis granivores Messor capitatus Latr (1962) Insect. Soc., 9, pp. 137-143; Oettler, J., Johnson, R.A., The old ladies of the seed harvester ant Pogonomyrmex rugosus: Foraging performed by two groups of workers (2009) J. Insect. Behav., 22, pp. 217-226; Abbott, A., Nutrient dynamic of ants (1977) Production Ecology of Ants and Termites, pp. 233-244. , M.V. Brian, Cambridge University Press Cambridge; D'Ettorre, P., Mora, P., Dibangou, V., Rouland, C., Errard, C., The role of symbiotic fungus in the digestive metabolism of two species of fungus-growing ants (2002) J. Comp. Physiol. B, 172, pp. 169-176; Rouland, C., Lenoir, F., Lepage, M., The role of the symbiotic fungus in the digestive metabolism of several species of fungus-growing termites (1991) Comp. Biochem. Physiol., 99 A, pp. 657-663; Williams, J., Villaroya, H., Petek Galactosidase, F., II, III and IV from seeds of Trifolium repens (1978) Biochem. J., 175, pp. 1069-1077; Werner, W., Rey, H.G., Wielinger, R.H., Properties of a new chromogen for determination of glucose in blood according to the COD/POD method (1970) Anal. Chem., 252, pp. 224-228; Mora, P., Rouland, C., Comparison of hydrolytic enzyme produced during growth on carboidrate substrated by Termitomyces associates of Pseudacanthotermes spiniger and Microtermes subhyalinus (isopteran: Termitidae) (1994) Sociobiology, 26, pp. 39-53; Koning, R.E., Secondary Growth. Plant Physiology Information, , http://plantphys.info/plant_biology/secondary.shtml; Scheffrahn, R.H., Termites (Isoptera) (2008) Encyclopedia of Entomology Part 20, pp. 3737-3747. , J.L. Capinera, Springer Berlin; Richard, F.J., Mora, P., Errard, C., Rouland, C., Digestive capacities of leaf-cutting ants and the contribution of their cultivar to the degradation of plant material (2005) J. Comp. Physiol. B, 175, pp. 297-303; Ayre, G.L., The relationships between food and digestive enzymes in five species of ants (Hymenoptera: Formicidae) (1967) Can. Entomol., 99, pp. 408-411; Went, F.W., Wheeler, J., Wheeler, G.C., Feeding and digestion in some ants (Veromessor and Manica) (1972) BioScience, 22, pp. 82-88; Moller, I.E., De Fine Licht, H.H., Harholt, J., Willats, G.T., Boomsma, J.J., The dynamics of plant cell-wall polysaccharide decomposition in leaf-cutting ant fungus garden (2011) PloS ONE, 6, p. 17506 |
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EcoFoG @ webmaster @ |
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Dezerald, O.; Talaga, S.; Leroy, C.; Carrias, J.-F.; Corbara, B.; Dejean, A.; Céréghino, R. |
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Environmental determinants of macroinvertebrate diversity in small water bodies: Insights from tank-bromeliads |
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Journal Article |
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2014 |
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Hydrobiologia |
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Hydrobiologia |
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723 |
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1 |
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77-86 |
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Freshwater biodiversity; Linear mixed effect modelling; Microcosms; Phytotelmata; Ponds |
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The interlocking leaves of tank-forming bromeliads (Bromeliaceae) collect rainwater and detritus, thus creating a freshwater habitat for specialized organisms. Their abundance and the possibility of quantifying communities with accuracy give us unparalleled insight into how changes in local to regional environments influence community diversity in small water bodies. We sampled 365 bromeliads (365 invertebrate communities) along a southeastern to northwestern range in French Guiana. Geographic locality determined the species pool for bromeliad invertebrates, and local environments determined the abundance patterns through the selection of traits that are best adapted to the bromeliad habitats. Patterns in community structure mostly emerged from patterns of predator species occurrence and abundance across local-regional environments, while the set of detritivores remained constant. Water volume had a strong positive correlation with invertebrate diversity, making it a biologically relevant measure of the pools' carrying capacity. The significant effects of incoming detritus and incident light show that changes in local environments (e.g., the conversion of forest to cropping systems) strongly influence freshwater communities. Because changes in local environments do not affect detritivores and predators equally, one may expect functional shifts as sets of invertebrates with particular traits are replaced or complemented by other sets with different traits. © 2013 Springer Science+Business Media Dordrecht. |
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CNRS, EcoLab (UMR-CNRS 5245), 118 Route de Narbonne, 31062 Toulouse, France |
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Lang, G.; Marcon, E. |
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Testing randomness of spatial point patterns with the Ripley statistic |
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Journal Article |
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2013 |
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ESAIM: Probability and Statistics |
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ESAIM PS |
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17 |
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767-788 |
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Central limit theorem, goodness-of-fit test, Höffding decomposition, null, point pattern, Poisson process, null |
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Aggregation patterns are often visually detected in sets of location data. These clusters may be the result of interesting dynamics or the effect of pure randomness. We build an asymptotically Gaussian test for the hypothesis of randomness corresponding to a homogeneous Poisson point process. We first compute the exact first and second moment of the Ripley K-statistic under the homogeneous Poisson point process model. Then we prove the asymptotic normality of a vector of such statistics for different scales and compute its covariance matrix. From these results, we derive a test statistic that is chi-square distributed. By a Monte-Carlo study, we check that the test is numerically tractable even for large data sets and also correct when only a hundred of points are observed |
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518 |
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Clair, B.; Alteyrac, J.; Gronvold, A.; Espejo, J.; Chanson, B.; Alméras, T. |
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Patterns of longitudinal and tangential maturation stresses in Eucalyptus nitens plantation trees |
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Journal Article |
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2013 |
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Annals of Forest Science |
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Ann. Forest Sci. |
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70 |
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8 |
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801-811 |
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Eucalyptus nitens; G-layer; Longitudinal maturation stress; Maturation strain; Tangential maturation stress; Tension wood |
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Context: Tree orientation is controlled by asymmetric mechanical stresses set during wood maturation. The magnitude of maturation stress differs between longitudinal and tangential directions, and between normal and tension woods. Aims: We aimed at evaluating patterns of maturation stress on eucalypt plantation trees and their relation with growth, with a focus on tangential stress evaluation. Methods: Released maturation strains along longitudinal and tangential directions were measured around the circumference of 29 Eucalyptus nitens trees, including both straight and leaning trees. Results: Most trees produced asymmetric patterns of longitudinal maturation strain, but more than half of the maturation strain variability occurred between trees. Many trees produced high longitudinal tensile stress all around their circumference. High longitudinal tensile stress was not systematically associated with the presence of gelatinous layer. The average magnitude of released longitudinal maturation strain was found negatively correlated to the growth rate. A methodology is proposed to ensure reliable evaluation of released maturation strain in both longitudinal and tangential directions. Tangential strain evaluated with this method was lower than previously reported. Conclusion: The stress was always tensile along the longitudinal direction and compressive along the tangential direction, and their respective magnitude was positively correlated. This correlation does not result from a Poisson effect but may be related to the mechanism of maturation stress generation. © 2013 # The Author(s) 2013. This article is published with open access at Springerlink.com. |
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Facultad de Ciencias Forestales, Universidad de Concepcion, Ciudad Universitaria, Concepcion, Chile |
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Export Date: 16 December 2013; Source: Scopus; Coden: Afosf; doi: 10.1007/s13595-013-0318-4; Language of Original Document: English; Correspondence Address: Clair, B.; CNRS, UMR Ecologie des Forêts de Guyane (EcoFoG), Campus Agronomique, BP 701, 97387 Kourou, French Guiana; email: bruno.clair@univ-montp2.fr; Funding Details: ANR-12-BS09-0004, French National Research Agency; References: Alméras, T., Fournier, M., Biomechanical design and long-term stability of trees: Morphological and wood traits involved in the balance between weight increase and the gravitropic reaction (2009) J Theor Biol, 256, pp. 370-381. , 19013473 10.1016/j.jtbi.2008.10.011; Alméras, T., Thibaut, A., Gril, J., Effect of circumferential heterogeneity of wood maturation strain, modulus of elasticity and radial growth on the regulation of stem orientation in trees (2005) Trees, 19, pp. 457-467. , 10.1007/s00468-005-0407-6; Archer, R.R., (1986) Growth Stresses and Strains in Trees, , Springer Verlag Berlin/Heidelberg/New York; Archer, R.R., On the origin of growth stresses in trees. 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Fortunel, C.; Paine, C.E.T.; Fine, P.V.A.; Kraft, N.J.B.; Baraloto, C. |
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Title |
Environmental factors predict community functional composition in Amazonian forests |
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Journal Article |
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2014 |
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Journal of Ecology |
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J. Ecol. |
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102 |
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1 |
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145-155 |
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Amazonian landscape; Climatic and soil gradients; Determinants of plant community diversity and structure; Environmental filtering; Functional traits; Tree communities; Tropical forests |
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Abstract |
The consequences of biodiversity loss for ecosystem services largely depend on the functional identities of extirpated species. However, poor descriptions of spatial patterns of community functional composition across landscapes hamper accurate predictions, particularly in highly diverse tropical regions. Therefore, understanding how community functional composition varies across environmental gradients remains an important challenge. We sampled 15 functional traits in 800 Neotropical tree species across 13 forest plots representative of the broad climatic and soil gradients encompassed by three widespread lowland forest habitats (terra firme forests on clay-rich soils, seasonally flooded forests and white-sand forests) at opposite ends of Amazonia (Peru and French Guiana). We combined univariate and multivariate approaches to test the magnitude and predictability of environmental filtering on community leaf and wood functional composition. Directional shifts in community functional composition correlated with environmental changes across the 13 plots, with denser leaves, stems and roots in forests occurring in environments with limited water and soil-nutrient availability. Critically, these relationships allowed us to accurately predict the functional composition of 61 additional forest plots from environmental data alone. Synthesis. Environmental filtering consistently shapes the functional composition of highly diverse tropical forests at large scales across the terra firme, seasonally flooded and white-sand forests of lowland Amazonia. Environmental factors drive and allow the prediction of variation in community functional composition among habitat types in Amazonian forests. © 2013 British Ecological Society. |
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Department of Biology, University of Florida, Gainesville, FL, 32611, United States |
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Export Date: 31 December 2013; Source: Scopus; Coden: Jecoa; doi: 10.1111/1365-2745.12160; Language of Original Document: English; Correspondence Address: Fortunel, C.; INRA, UMR Ecologie des Forêts de Guyane, BP 709, Kourou Cedex, 97387, France; email: claire.fortunel@ecofog.gf; Funding Details: DEB-0743103/0743800, NSF, National Science Foundation; References: Agrawal, A.A., Fishbein, M., Plant defense syndromes (2006) Ecology, 87, pp. S132-S149; Anderson, L.O., Malhi, Y., Ladle, R.J., Aragao, L., Shimabukuro, Y., Phillips, O.L., Influence of landscape heterogeneity on spatial patterns of wood productivity, wood specific density and above ground biomass in Amazonia (2009) Biogeosciences, 6, pp. 1883-1902; Asner, G.P., Alencar, A., Drought impacts on the Amazon forest: the remote sensing perspective (2010) New Phytologist, 187, pp. 569-578; Asner, G.P., Loarie, S.R., Heyder, U., Combined effects of climate and land-use change on the future of humid tropical forests (2010) Conservation Letters, 3, pp. 395-403; Baraloto, C., Paine, C.E.T., Patiño, S., Bonal, D., Herault, B., Chave, J., Functional trait variation and sampling strategies in species-rich plant communities (2010) Functional Ecology, 24, pp. 208-216; Baraloto, C., Paine, C.E.T., Poorter, L., Beauchene, J., Bonal, D., Domenach, A.M., Hérault, B., Chave, J., Decoupled leaf and stem economics in rain forest trees (2010) Ecology Letters, 13, pp. 1338-1347; Baraloto, C., Rabaud, S., Molto, Q., Blanc, L., Fortunel, C., Hérault, B., Davila, N., Fine, P.V.A., Disentangling stand and environmental correlates of aboveground biomass in Amazonian forests (2011) Global Change Biology, 17, pp. 2677-2688; Baraloto, C., Molto, Q., Rabaud, S., Hérault, B., Valencia, R., Blanc, L., Fine, P.V.A., Thompson, J., Rapid simultaneous estimation of aboveground biomass and tree diversity across Neotropical forests: a comparison of field inventory methods (2013) Biotropica, 45, pp. 288-298; Belyea, L.R., Lancaster, J., Assembly rules within a contingent ecology (1999) Oikos, 86, pp. 402-416; Berry, S.L., Roderick, M.L., Estimating mixtures of leaf functional types using continental-scale satellite and climatic data (2002) Global Ecology and Biogeography, 11, pp. 23-39; Brando, P.M., Nepstad, D.C., Balch, J.K., Bolker, B., Christman, M.C., Coe, M., Putz, F.E., Fire-induced tree mortality in a neotropical forest: the roles of bark traits, tree size, wood density and fire behavior (2012) Global Change Biology, 18, pp. 630-641; Burnham, K.P., Anderson, D.R., Multimodel inference – understanding AIC and BIC in model selection (2004) Sociological Methods & Research, 33, pp. 261-304; Calcagno, V., de Mazancourt, C., glmulti: an R package for easy automated model selection with (generalized) linear models (2010) Journal of Statistical Software, 34, pp. 1-29; Chapin, F.S., BretHarte, M.S., Hobbie, S.E., Zhong, H.L., Plant functional types as predictors of transient responses of arctic vegetation to global change (1996) Journal of Vegetation Science, 7, pp. 347-358; Chaturvedi, R.K., Raghubanshi, A.S., Singh, J.S., Leaf attributes and tree growth in a tropical dry forest (2011) Journal of Vegetation Science, 22, pp. 917-931; Chave, J., Coomes, D., Jansen, S., Lewis, S.L., Swenson, N.G., Zanne, A.E., Towards a worldwide wood economics spectrum (2009) Ecology Letters, 12, pp. 351-366; Cingolani, A.M., Cabido, M., Gurvich, D.E., Renison, D., Diaz, S., Filtering processes in the assembly of plant communities: are species presence and abundance driven by the same traits? 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Evidence from five neotropical forests (2008) Ecology, 89, pp. 1908-1920; Quesada, C.A., Lloyd, J., Anderson, L.O., Fyllas, N.M., Schwarz, M., Czimczik, C.I., Soils of Amazonia with particular reference to the RAINFOR sites (2011) Biogeosciences, 8, pp. 1415-1440; Quesada, C.A., Phillips, O.L., Schwarz, M., Czimczik, C.I., Baker, T.R., Patino, S., Basin-wide variations in Amazon forest structure and function are mediated by both soils and climate (2012) Biogeosciences, 9, pp. 2203-2246; (2011), http://www.R-project.org, R Development Core TeamReich, P.B., Walters, M.B., Ellsworth, D.S., From tropics to tundra: global convergence in plant functioning (1997) Proceedings of the National Academy of Sciences of the United States of America, 94, pp. 13730-13734; Reu, B., Zaehle, S., Proulx, R., Bohn, K., Kleidon, A., Pavlick, R., Schmidtlein, S., The role of plant functional trade-offs for biodiversity changes and biome shifts under scenarios of global climatic change (2011) Biogeosciences, 7, pp. 7449-7473; Ryan, C.M., Hill, T., Woollen, E., Ghee, C., Mitchard, E., Cassells, G., Grace, J., Williams, M., Quantifying small-scale deforestation and forest degradation in African woodlands using radar imagery (2012) Global Change Biology, 18, pp. 243-257; Smith, M.J., Sibly, R.M., Identification of trade-offs underlying the primary strategies of plants (2008) Evolutionary Ecology Research, 10, pp. 45-60; ter Steege, H., Sabatier, D., Castellanos, H., Van Andel, T., Duivenvoorden, J., De Oliveira, A.A., Ek, R., Mori, S., An analysis of the floristic composition and diversity of Amazonian forests including those of the Guiana Shield (2000) Journal of Tropical Ecology, 16, pp. 801-828; ter Steege, H., Pitman, N.C.A., Phillips, O.L., Chave, J., Sabatier, D., Duque, A., Molino, J.F., Vasquez, R., Continental-scale patterns of canopy tree composition and function across Amazonia (2006) Nature, 443, pp. 444-447; Suding, K.N., Goldstein, L.J., Testing the Holy Grail framework: using functional traits to predict ecosystem change (2008) New Phytologist, 180, pp. 559-562; Swenson, N.G., Anglada-Cordero, P., Barone, J.A., Deterministic tropical tree community turnover: evidence from patterns of functional beta diversity along an elevational gradient (2010) Proceedings of the Royal Society of London. Series B, Biological Sciences, 278, pp. 877-884; Swenson, N.G., Enquist, B.J., Opposing assembly mechanisms in a neotropical dry forest: implications for phylogenetic and functional community ecology (2009) Ecology, 90, pp. 2161-2170; Swenson, N.G., Stegen, J.C., Davies, S.J., Erickson, D.L., Forero-Montaña, J., Hurlbert, A.H., Kress, W.J., Zimmerman, J.K., Temporal turnover in the composition of tropical tree communities: functional determinism and phylogenetic stochasticity (2012) Ecology, 93, pp. 490-499; Tilman, D., Constraints and tradeoffs – toward a predictive theory of competition and succession (1990) Oikos, 58, pp. 3-15; Wagner, F., Herault, B., Stahl, C., Bonal, D., Rossi, V., Modeling water availability for trees in tropical forests (2011) Agricultural and Forest Meteorology, 151, pp. 1202-1213; Wand, M.P., Fast computation of multivariate kernel estimators (1994) Journal of Computational and Graphical Statistics, 3, pp. 433-445; Warton, D.I., Wright, I.J., Falster, D.S., Westoby, M., Bivariate line-fitting methods for allometry (2006) Biological Reviews, 81, pp. 259-291; Webb, C.T., Hoeting, J.A., Ames, G.M., Pyne, M.I., Poff, N.L., A structured and dynamic framework to advance traits-based theory and prediction in ecology (2010) Ecology Letters, 13, pp. 267-283; Williamson, G.B., Wiemann, M.C., Measuring wood specific gravity ... correctly (2010) American Journal of Botany, 97, pp. 519-524; Wright, I.J., Reich, P.B., Westoby, M., Ackerly, D.D., Baruch, Z., Bongers, F., The worldwide leaf economics spectrum (2004) Nature, 428, pp. 821-827; Wright, I.J., Reich, P.B., Cornelissen, J.H.C., Falster, D.S., Garnier, E., Hikosaka, K., Assessing the generality of global leaf trait relationships (2005) New Phytologist, 166, pp. 485-496; Wright, I.J., Falster, D.S., Pickup, M., Westoby, M., Cross-species patterns in the coordination between leaf and stem traits, and their implications for plant hydraulics (2006) Physiologia Plantarum, 127, pp. 445-456; Wright, I.J., Ackerly, D.D., Bongers, F., Harms, K.E., Ibarra-Manriquez, G., Martinez-Ramos, M., Relationships among ecologically important dimensions of plant trait variation in seven Neotropical forests (2007) Annals of Botany, 99, pp. 1003-1015; Wright, S.J., Kitajima, K., Kraft, N.J.B., Reich, P.B., Wright, I.J., Bunker, D.E., Functional traits and the growth-mortality trade-off in tropical trees (2010) Ecology, 91, pp. 3664-3674 |
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Perrin, A.-S.; Fujisaki, K.; Petitjean, C.; Sarrazin, M.; Godet, M.; Garric, B.; Horth, J.-C.; Balbino, L.C.; Filho, A.S.; de Almeida Machado, P.L.O.; Brossard, M. |
![goto web page (via DOI) doi](img/doi.gif)
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Conversion of forest to agriculture in Amazonia with the chop-and-mulch method: Does it improve the soil carbon stock? |
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Journal Article |
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2014 |
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Agriculture, Ecosystems and Environment |
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Agric. Ecosyst. Environ. |
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184 |
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101-114 |
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Annual crops; Brachiaria; Deforestation; Fire-free; French Guiana; No-tillage |
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Fire-free forest conversion with organic inputs as an alternative to slash-and-burn could improve agro-ecosystem sustainability. We assessed soil carbon mass changes in a sandy-clayey and well-drained soil in French Guiana after forest clearing by the chop-and-mulch method and crop establishment. At the experimental site of Combi, native forest was cut down in October 2008; woody biomass was chopped and incorporated into the top 20cm of soil. After about one year of legume and grass cover, three forms of land management were compared: grassland (Urochloa ruziziensis), maize/soybean crop rotation with disk tillage and in direct seeding without tillage. There were four replicates. We measured 14.16kgm-2 of carbon in 2mm-sieved soil down to 2m depth for the initial forest. Forest clearing did not induce significant soil compaction; neither did any specific agricultural practice. In converted soils, C stocks were measured in the 0-30cm layer after each crop for three years. Carbon mass changes for soil fractions <2mm (soil C stock) and >2mm (soil C pool) in the 0-5, 5-10, 10-20 and 20-30cm soil layers were assessed on an equivalent soil mass basis. One year and 1.5 years after deforestation, higher C stocks (+0.64 to 1.16kgCm-2yr-1) and C pools (+0.52 to 0.90kgCm-2yr-1) were measured in converted soils, compared to those of the forest into the top 30cm of soil. However, the masses of carbon in these converted soils declined later. The highest rates of carbon decrease were measured between 1.5 and 2 years after forest conversion in the <2mm soil fraction, from 0.46kgCm-2yr-1 (in grassland soils) to 0.71kgCm-2yr-1 (in cropland under no tillage). The carbon pool declined during the third year at rates of 0.41kgCm-2yr-1 (cropland under disk tillage) to 0.76kgCm-2yr-1 (grassland soils). Three years after forest conversion, C masses in the top 30cm of soils for grassland showed similar values than for forest. In comparison, the carbon stock in cropped soils managed under no tillage in direct seeding (without mulch) was significantly 17% and 16% lower than in forest and grassland soils, respectively. None of the studied agricultural practices succeeded in accumulating carbon from the chopped forest biomass. © 2013 Elsevier B.V. |
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EMBRAPA Arroz e Feijao, Cx Postal 179, CEP 75375-000 Santo Antonio de Goias, GO, Brazil |
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Export Date: 2 January 2014; Source: Scopus; Coden: Aeend; doi: 10.1016/j.agee.2013.11.009 |
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Groc, S.; Delabie, J.H.C.; Fernández, F.; Leponce, M.; Orivel, J.; Silvestre, R.; Vasconcelos, H.L.; Dejean, A. |
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Leaf-litter ant communities in a pristine Guianese rainforest: stable functional structure versus high species turnover |
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2013 |
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Myrmecological News |
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Myrmecol. News |
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19 |
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43-51 |
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Leroy, C.; Gril, E.; Si Ouali, L.; Coste, S.; Gérard, B.; Maillard, P.; Mercier, H.; Stahl, C. |
![goto web page (via DOI) doi](img/doi.gif)
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Water and nutrient uptake capacity of leaf-absorbing trichomes vs. roots in epiphytic tank bromeliads |
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Journal Article |
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2019 |
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Environmental and Experimental Botany |
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Environ. Exp. Bot. |
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163 |
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112-123 |
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15 N labelling; Carbon metabolism; Nutrient uptake; Plant performance; Tank bromeliad; Water status; Aechmea |
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The water and nutrient uptake mechanisms used by vascular epiphytes have been the subject of a few studies. While leaf absorbing trichomes (LATs) are the main organ involved in resource uptake by bromeliads, little attention has been paid to the absorbing role of epiphytic bromeliad roots. This study investigates the water and nutrient uptake capacity of LATs vs. roots in two epiphytic tank bromeliads Aechmea aquilega and Lutheria splendens. The tank and/or the roots of bromeliads were watered, or not watered at all, in different treatments. We show that LATs and roots have different functions in resource uptake in the two species, which we mainly attributed to dissimilarities in carbon acquisition and growth traits (e.g., photosynthesis, relative growth rate, non-structural carbohydrates, malate), to water relation traits (e.g., water and osmotic potentials, relative water content, hydrenchyma thickness) and nutrient uptake (e.g., 15 N-labelling). While the roots of A. aquilega did contribute to water and nutrient uptake, the roots of L. splendens were less important than the role played by the LATs in resource uptake. We also provide evidenced for a synergistic effect of combined watering of tank and root in the Bromelioideae species. These results call for a more complex interpretation of LATs vs. roots in resource uptake in bromeliads. © 2019 Elsevier B.V. |
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INRA, UMR EcoFoG, CNRS, CIRAD, AgroParisTech, Université des Antilles, Université de Guyane, Kourou, 97310, France |
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Elsevier B.V. |
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00988472 (Issn) |
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871 |
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Steidinger, B.S.; Crowther, T.W.; Liang, J.; Van Nuland, M.E.; Werner, G.D.A.; Reich, P.B.; Nabuurs, G.; de-Miguel, S.; Zhou, M.; Picard, N.; Herault, B.; Zhao, X.; Zhang, C.; Routh, D.; Peay, K.G.; Abegg, M.; Adou Yao, C.Y.; Alberti, G.; Almeyda Zambrano, A.; Alvarez-Davila, E.; Alvarez-Loayza, P.; Alves, L.F.; Ammer, C.; Antón-Fernández, C.; Araujo-Murakami, A.; Arroyo, L.; Avitabile, V.; Aymard, G.; Baker, T.; Bałazy, R.; Banki, O.; Barroso, J.; Bastian, M.; Bastin, J.-F.; Birigazzi, L.; Birnbaum, P.; Bitariho, R.; Boeckx, P.; Bongers, F.; Bouriaud, O.; Brancalion, P.H.S.; Brandl, S.; Brearley, F.Q.; Brienen, R.; Broadbent, E.; Bruelheide, H.; Bussotti, F.; Cazzolla Gatti, R.; Cesar, R.; Cesljar, G.; Chazdon, R.; Chen, H.Y.H.; Chisholm, C.; Cienciala, E.; Clark, C.J.; Clark, D.; Colletta, G.; Condit, R.; Coomes, D.; Cornejo Valverde, F.; Corral-Rivas, J.J.; Crim, P.; Cumming, J.; Dayanandan, S.; de Gasper, A.L.; Decuyper, M.; Derroire, G.; DeVries, B.; Djordjevic, I.; Iêda, A.; Dourdain, A.; Obiang, N.L.E.; Enquist, B.; Eyre, T.; Fandohan, A.B.; Fayle, T.M.; Feldpausch, T.R.; Finér, L.; Fischer, M.; Fletcher, C.; Fridman, J.; Frizzera, L.; Gamarra, J.G.P.; Gianelle, D.; Glick, H.B.; Harris, D.; Hector, A.; Hemp, A.; Hengeveld, G.; Herbohn, J.; Herold, M.; Hillers, A.; Honorio Coronado, E.N.; Huber, M.; Hui, C.; Cho, H.; Ibanez, T.; Jung, I.; Imai, N.; Jagodzinski, A.M.; Jaroszewicz, B.; Johannsen, V.; Joly, C.A.; Jucker, T.; Karminov, V.; Kartawinata, K.; Kearsley, E.; Kenfack, D.; Kennard, D.; Kepfer-Rojas, S.; Keppel, G.; Khan, M.L.; Killeen, T.; Kim, H.S.; Kitayama, K.; Köhl, M.; Korjus, H.; Kraxner, F.; Laarmann, D.; Lang, M.; Lewis, S.; Lu, H.; Lukina, N.; Maitner, B.; Malhi, Y.; Marcon, E.; Marimon, B.S.; Marimon-Junior, B.H.; Marshall, A.R.; Martin, E.; Martynenko, O.; Meave, J.A.; Melo-Cruz, O.; Mendoza, C.; Merow, C.; Monteagudo Mendoza, A.; Moreno, V.; Mukul, S.A.; Mundhenk, P.; Nava-Miranda, M.G.; Neill, D.; Neldner, V.; Nevenic, R.; Ngugi, M.; Niklaus, P.; Oleksyn, J.; Ontikov, P.; Ortiz-Malavasi, E.; Pan, Y.; Paquette, A.; Parada-Gutierrez, A.; Parfenova, E.; Park, M.; Parren, M.; Parthasarathy, N.; Peri, P.L.; Pfautsch, S.; Phillips, O.; Piedade, M.T.; Piotto, D.; Pitman, N.C.A.; Polo, I.; Poorter, L.; Poulsen, A.D.; Poulsen, J.R.; Pretzsch, H.; Ramirez Arevalo, F.; Restrepo-Correa, Z.; Rodeghiero, M.; Rolim, S.; Roopsind, A.; Rovero, F.; Rutishauser, E.; Saikia, P.; Saner, P.; Schall, P.; Schelhaas, M.-J.; Schepaschenko, D.; Scherer-Lorenzen, M.; Schmid, B.; Schöngart, J.; Searle, E.; Seben, V.; Serra-Diaz, J.M.; Salas-Eljatib, C.; Sheil, D.; Shvidenko, A.; Silva-Espejo, J.; Silveira, M.; Singh, J.; Sist, P.; Slik, F.; Sonké, B.; Souza, A.F.; Stereńczak, K.; Svenning, J.-C.; Svoboda, M.; Targhetta, N.; Tchebakova, N.; Steege, H.; Thomas, R.; Tikhonova, E.; Umunay, P.; Usoltsev, V.; Valladares, F.; van der Plas, F.; Van Do, T.; Vasquez Martinez, R.; Verbeeck, H.; Viana, H.; Vieira, S.; von Gadow, K.; Wang, H.-F.; Watson, J.; Westerlund, B.; Wiser, S.; Wittmann, F.; Wortel, V.; Zagt, R.; Zawila-Niedzwiecki, T.; Zhu, Z.-X.; Zo-Bi, I.C.; GFBI consortium |
![goto web page (via DOI) doi](img/doi.gif)
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Climatic controls of decomposition drive the global biogeography of forest-tree symbioses |
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Journal Article |
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2019 |
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Nature |
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Nature |
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569 |
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7756 |
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404-408 |
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Fungi |
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The identity of the dominant root-associated microbial symbionts in a forest determines the ability of trees to access limiting nutrients from atmospheric or soil pools 1,2 , sequester carbon 3,4 and withstand the effects of climate change 5,6 . Characterizing the global distribution of these symbioses and identifying the factors that control this distribution are thus integral to understanding the present and future functioning of forest ecosystems. Here we generate a spatially explicit global map of the symbiotic status of forests, using a database of over 1.1 million forest inventory plots that collectively contain over 28,000 tree species. Our analyses indicate that climate variables—in particular, climatically controlled variation in the rate of decomposition—are the primary drivers of the global distribution of major symbioses. We estimate that ectomycorrhizal trees, which represent only 2% of all plant species 7 , constitute approximately 60% of tree stems on Earth. Ectomycorrhizal symbiosis dominates forests in which seasonally cold and dry climates inhibit decomposition, and is the predominant form of symbiosis at high latitudes and elevation. By contrast, arbuscular mycorrhizal trees dominate in aseasonal, warm tropical forests, and occur with ectomycorrhizal trees in temperate biomes in which seasonally warm-and-wet climates enhance decomposition. Continental transitions between forests dominated by ectomycorrhizal or arbuscular mycorrhizal trees occur relatively abruptly along climate-driven decomposition gradients; these transitions are probably caused by positive feedback effects between plants and microorganisms. Symbiotic nitrogen fixers—which are insensitive to climatic controls on decomposition (compared with mycorrhizal fungi)—are most abundant in arid biomes with alkaline soils and high maximum temperatures. The climatically driven global symbiosis gradient that we document provides a spatially explicit quantitative understanding of microbial symbioses at the global scale, and demonstrates the critical role of microbial mutualisms in shaping the distribution of plant species. © 2019, The Author(s), under exclusive licence to Springer Nature Limited. |
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Faculty of Environmental Sciences and Natural Resource Management, Norwegian University of Life Sciences, Ås, Norway |
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Nature Publishing Group |
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EcoFoG @ webmaster @ |
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