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Scotti-Saintagne, C.; Bodenes, C.; Barreneche, T.; Bertocchi, E.; Plomion, C.; Kremer, A. |
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Title |
Detection of quantitative trait loci controlling bud burst and height growth in Quercus robur L |
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Journal Article |
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Year |
2004 |
Publication |
Theoretical and Applied Genetics |
Abbreviated Journal |
Theor. Appl. Genet. |
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Volume |
109 |
Issue |
8 |
Pages  |
1648-1659 |
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Abstract |
Genetic variation of bud burst and early growth components was estimated in a full-sib family of Quercus robur L. comprising 278 offspring. The full sibs were vegetatively propagated, and phenotypic assessments were made in three field tests. This two-generation pedigree was also used to construct a genetic linkage map (12 linkage groups, 128 markers) and locate quantitative trait loci (QTLs) controlling bud burst and growth components. In each field test, the date of bud burst extended over a period of 20 days from the earliest to the latest clone. Bud burst exhibited higher heritability (0.15-0.51) than growth components (0.04-0.23) and also higher correlations across field tests. Over the three tests there were 32 independent detected QTLs (Pless than or equal to5% at the chromosome level) controlling bud burst, which likely represent at least 12 unique genes or chromosomal regions controlling this trait. QTLs explained from 3% to 11% of the variance of the clonal means. The number of QTLs controlling height growth components was lower and varied between two and four. However the contribution of each QTL to the variance of the clonal mean was higher (from 4% to 19%). These results indicate that the genetic architecture of two important fitness-related traits are quite different. On the one hand, bud burst is controlled by several QTLs with rather low to moderate effects, but contributing to a high genetic (additive) variance. On the other hand, height growth depends on fewer QTLs with moderate to strong effects, resulting in lower heritabilities of the trait. |
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INRA, UMR Biodivers Genes & Ecosyst, F-33612 Cestas, France, Email: antoine.kremer@pierroton.inra.fr |
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0040-5752 |
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ISI:000225054800012 |
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EcoFoG @ eric.marcon @ |
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260 |
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Perrot, T.; Guillaume, S.; Nadine, A.; Jacques, B.; Philippe, G.; Stéphane, D.; Rodnay, S.; Mélanie, M.-R.; Eric, G. |
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Title |
A reverse chemical ecology approach to explore wood natural durability |
Type |
Journal Article |
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Year |
2020 |
Publication |
Microbial Biotechnology |
Abbreviated Journal |
Microb. Biotechnol. |
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Volume |
13 |
Issue |
5 |
Pages |
1673-1677 |
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Keywords |
glutathione transferase; Article; biodegradation; data base; detoxification; ecology; enzyme activity; enzyme metabolism; forest; molecular dynamics; physical parameters; species identification; thermal analysis; Trametes versicolor; wood; wood durability |
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Abstract |
The natural durability of wood species, defined as their inherent resistance to wood-destroying agents, is a complex phenomenon depending on many biotic and abiotic factors. Besides the presence of recalcitrant polymers, the presence of compounds with antimicrobial properties is known to be important to explain wood durability. Based on the advancement in our understanding of fungal detoxification systems, a reverse chemical ecology approach was proposed to explore wood natural durability using fungal glutathione transferases. A set of six glutathione transferases from the white-rot Trametes versicolor were used as targets to test wood extracts from seventeen French Guiana neotropical species. Fluorescent thermal shift assays quantified interactions between fungal glutathione transferases and these extracts. From these data, a model combining this approach and wood density significantly predicts the wood natural durability of the species tested previously using long-term soil bed tests. Overall, our findings confirm that detoxification systems could be used to explore the chemical environment encountered by wood-decaying fungi and also wood natural durability. © 2020 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology. |
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Université de Lorraine, INRAE, LERMAB, Nancy, France |
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John Wiley and Sons Ltd |
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17517907 (Issn) |
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EcoFoG @ webmaster @ |
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955 |
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Lebrini, M.; Robert, F.; Roos, C. |
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Title |
Inhibition Effect of Alkaloids Extract from Annona Squamosa Plant on the Corrosion of C38 Steel in Normal Hydrochloric Acid Medium |
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Journal Article |
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Year |
2010 |
Publication |
International Journal of Electrochemical Science |
Abbreviated Journal |
Int. J. Electrochem. Sci. |
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5 |
Issue |
11 |
Pages |
1698-1712 |
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Keywords |
Plant extract; corrosion inhibitors; C38 steel; acidic media; adsorption |
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In this work, an alkaloids extract from Annona squamosa plant have been studied as possible corrosion inhibitor for C38 steel in molar hydrochloric acid (1 M HCl). Potentiodynamic polarization and AC impedance methods have been used. The corrosion inhibition efficiency increases on increasing plant extract concentration. Polarisation studies showed that Annona squamosa extract was mixed-type inhibitor in 1 M HCl. The inhibition efficiency of Annona squamosa extract was temperature-dependent and its addition led to an increase of the activation corrosion energy revealing a physical adsorption between the extract and the metal surface. The adsorption of the Annona squamosa extract followed Langmuir's adsorption isotherm. The inhibitive effect of Annona squamosa is ascribed to the presence of organic compounds in the extract. The examined extract is considered as non-cytotoxic substance. |
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[Lebrini, M.] CNRS 8172 UMR ECOFOG, Lab Mat & Mol Milieu Amazonien, Cayenne 97337, French Guiana, Email: florent.robert@guyane.univ-ag.fr |
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ELECTROCHEMICAL SCIENCE GROUP |
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1452-3981 |
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ISI:000283999000015 |
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EcoFoG @ eric.marcon @ |
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20 |
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Rodrigues, A.M.S.; Theodoro, P.N.E.T.; Eparvier, V.; Basset, C.; Silva, M.R.R.; Beauchene, J.; Espindola, L.S.; Stien, D. |
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Title |
Search for Antifungal Compounds from the Wood of Durable Tropical Trees |
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Journal Article |
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Year |
2010 |
Publication |
Journal of Natural Products |
Abbreviated Journal |
J. Nat. Prod. |
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73 |
Issue |
10 |
Pages |
1706-1707 |
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Research on antifungal compounds from the durable wood from French Guiana Amazonian forest trees highlights the correlation between the activity of their extracts against wood-rotting fungi and human pathogens. The fractionation of an ethyl acetate extract of Sextonia rubra wood led to the isolation of rubrenolide (1) and rubrynolide (2). The potential of compounds 1 and 2 is described through the evaluation of their activity against 16 pathogenic fungi and their cytotoxicity toward NIH-3T3 mammalian fibroblast cells. |
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[Rodrigues, Alice M. S.; Eparvier, Veronique; Basset, Charlie; Espindola, Laila S.; Stien, Didier] Univ Antilles Guyane, CNRS, UMR ECOFOG, F-97300 Cayenne, France, Email: darvenne@unb.br |
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AMER CHEMICAL SOC |
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0163-3864 |
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ISI:000283288900015 |
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no |
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EcoFoG @ eric.marcon @ |
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25 |
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Royer, M.; Herbette, G.; Eparvier, V.; Beauchene, J.; Thibaut, B.; Stien, D. |
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Title |
Secondary metabolites of Bagassa guianensis Aubl. wood: A study of the chemotaxonomy of the Moraceae family |
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Journal Article |
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Year |
2010 |
Publication |
Phytochemistry |
Abbreviated Journal |
Phytochemistry |
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71 |
Issue |
14-15 |
Pages |
1708-1713 |
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Bagassa guianensis; Moraceae; Secondary metabolites; Stilbenes; Moracins; Flavonoids; Natural durability |
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In order to explain the durability of the Moraceae plant family, phytochemistry of Bagassa guianensis was performed. Ethyl acetate extract was obtained from the heartwood and 18 secondary metabolites were isolated, including 6 moracins [6-O-methyl-moracin M, 6-O-methyl-moracin N and moracin Z; previously identified: moracin M, moracin N and moracin P], 8 stilbenoids [presently identified: (-)-epialboctalol and arachidin 4; previously identified: alboctalol, trans-resveratrol, arachidin 2, trans-oxyresveratrol and artogomezianol], 3 previously identified flavonoids, steppogenin, katuranin and dihydromorin, beta-sitosterol and resorcinol. Previous studies suggest that stilbenoids are responsible for the natural durability of wood. Our study has determined that B. guianensis is closely related to Morus sp. in phylogeny and should be included in the Moreae sensu stricto tribe of the Moraceae family. (C) 2010 Elsevier Ltd. All rights reserved. |
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[Royer, Mariana; Eparvier, Veronique; Thibaut, Bernard; Stien, Didier] Univ Antilles Guyane, CNRS, UMR Ecofog, F-97337 Cayenne, France, Email: didier.stien@guyane.cnrs.fr |
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PERGAMON-ELSEVIER SCIENCE LTD |
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0031-9422 |
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ISI:000282453900013 |
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EcoFoG @ eric.marcon @ |
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30 |
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Donald, Julian ; Murienne, Jérôme ; Chave, Jérome ; Iribar, Amaia ; Louisanna, Eliane ; Manzi, Sophie ; Roy, Melanie ; Tao, Shengli ; Orivel, Jérome ; Schimann, Heidy; Zinger, Lucie |
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Title |
Multi-taxa environmental DNA inventories reveal distinct taxonomic and functional diversity in urban tropical forest fragments |
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Journal Article |
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Year |
2021 |
Publication |
Global Ecology and Conservation |
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29 |
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e01724 |
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Urban expansion and associated habitat transformation drives shifts in biodiversity, with declines in taxonomic and functional diversity. Forests fragments within urban landscapes offer a number of ecosystem services, and help to maintain biodiversity and ecosystem functions. Here, we focus on a tropical forest environment, and on the soil biota. Using eDNA metabarcoding, we compare forest fragments within the city of Cayenne, French Guiana, with a neighbouring continuous undisturbed forest. We wished to determine if urban forest fragments conserve high levels of alpha and beta diversity as well as similar functional composition for plants, soil animals, fungi and bacteria. We found that alpha diversity is similar across habitats for plants and fungi, lower in urban forests for metazoans and higher for bacteria. We also found that urban forests communities differ from undisturbed forests in their taxonomic composition, with urban forests exhibiting greater turnover between fragments potentially caused by ecological drift and limited dispersal. However, their functional composition exhibited limited differences, with an enrichment of palms, arbuscular mycorrhizal fungi and bacteria and a depletion of climber plants and termites. Thus, although urban forest fragments do shelter soil biodiversity that differs from native forests, the losses of soil functions may be relatively limited. This study demonstrates the strong potential of a multi-taxa eDNA approach for rapid inventories across taxonomic kingdoms, in particular for cryptic soil diversity. It also demonstrates the key role of urban forest fragments in conserving biodiversity and ecosystem function, and points to a need for more systematic monitoring of these areas in urban management plans. |
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EcoFoG @ webmaster @ |
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1025 |
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Craine, J.M.; Elmore, A.J.; Wang, L.; Aranibar, J.; Bauters, M.; Boeckx, P.; Crowley, B.E.; Dawes, M.A.; Delzon, S.; Fajardo, A.; Fang, Y.; Fujiyoshi, L.; Gray, A.; Guerrieri, R.; Gundale, M.J.; Hawke, D.J.; Hietz, P.; Jonard, M.; Kearsley, E.; Kenzo, T.; Makarov, M.; Marañón-Jiménez, S.; McGlynn, T.P.; McNeil, B.E.; Mosher, S.G.; Nelson, D.M.; Peri, P.L.; Roggy, J.C.; Sanders-DeMott, R.; Song, M.; Szpak, P.; Templer, P.H.; Van der Colff, D.; Werner, C.; Xu, X.; Yang, Y.; Yu, G.; Zmudczyńska-Skarbek, K. |
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Isotopic evidence for oligotrophication of terrestrial ecosystems |
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Journal Article |
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2018 |
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Nature Ecology & Evolution |
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2 |
Issue |
11 |
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1735-1744 |
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Human societies depend on an Earth system that operates within a constrained range of nutrient availability, yet the recent trajectory of terrestrial nitrogen (N) availability is uncertain. Examining patterns of foliar N concentrations and isotope ratios (delta15N) from more than 43,000 samples acquired over 37 years, here we show that foliar N concentration declined by 9% and foliar delta15N declined by 0.6–1.6 per thousand. Examining patterns across different climate spaces, foliar delta15N declined across the entire range of mean annual temperature and mean annual precipitation tested. These results suggest declines in N supply relative to plant demand at the global scale. In all, there are now multiple lines of evidence of declining N availability in many unfertilized terrestrial ecosystems, including declines in delta15N of tree rings and leaves from herbarium samples over the past 75–150 years. These patterns are consistent with the proposed consequences of elevated atmospheric carbon dioxide and longer growing seasons. These declines will limit future terrestrial carbon uptake and increase nutritional stress for herbivores. |
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2397-334x |
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EcoFoG @ webmaster @ Craine2018 |
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827 |
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Fine, P.V.A.; Metz, M.R.; Lokvam, J.; Mesones, I.; Zuniga, J.M.A.; Lamarre, G.P.A.; Pilco, M.V.; Baraloto, C. |
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Title |
Insect herbivores, chemical innovation, and the evolution of habitat specialization in Amazonian trees |
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Journal Article |
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2013 |
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Ecology |
Abbreviated Journal |
Ecology |
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94 |
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8 |
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1764-1775 |
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Amazonia; Ecological speciation; Ecotypes; Herbivory; Natural enemies; Plant defense; Protium subserratum; Terra firme forests; Tropical rain forests; White-sand forests |
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Herbivores are often implicated in the generation of the extraordinarily diverse tropical flora. One hypothesis linking enemies to plant diversification posits that the evolution of novel defenses allows plants to escape their enemies and expand their ranges. When range expansion involves entering a new habitat type, this could accelerate defense evolution if habitats contain different assemblages of herbivores and/or divergent resource availabilities that affect plant defense allocation. We evaluated this hypothesis by investigating two sister habitat specialist ecotypes of Protium subserratum (Burseraceae), a common Amazonian tree that occurs in white-sand and terra firme forests. We collected insect herbivores feeding on the plants, assessed whether growth differences between habitats were genetically based using a reciprocal transplant experiment, and sampled multiple populations of both lineages for defense chemistry. Protium subserratum plants were attacked mainly by chrysomelid beetles and cicadellid hemipterans. Assemblages of insect herbivores were dissimilar between populations of ecotypes from different habitats, as well as from the same habitat 100 km distant. Populations from terra firme habitats grew significantly faster than white-sand populations; they were taller, produced more leaf area, and had more chlorophyll. White-sand populations expressed more dry mass of secondary compounds and accumulated more flavone glycosides and oxidized terpenes, whereas terra firme populations produced a coumaroylquinic acid that was absent from white-sand populations. We interpret these results as strong evidence that herbivores and resource availability select for divergent types and amounts of defense investment in white-sand and terra firme lineages of Protium subserratum, which may contribute to habitat-mediated speciation in these trees. © 2013 by the Ecological Society of America. |
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Department of Biology, University of Florida, Gainesville, FL 32611, United States |
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00129658 (Issn) |
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Export Date: 30 August 2013; Source: Scopus; Coden: Ecola; doi: 10.1890/12-1920.1; Language of Original Document: English; Correspondence Address: Department of Integrative Biology, 1005 Valley Life Sciences Building 3140, University of California, Berkeley, CA 94720-3140, United States |
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EcoFoG @ webmaster @ |
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500 |
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Scotti, I.; Delph, L.F. |
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Selective trade-offs and sex-chromosome evolution in Silene latifolia |
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Journal Article |
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Year |
2006 |
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Evolution |
Abbreviated Journal |
Evolution |
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60 |
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9 |
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1793-1800 |
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antagonistic genes; linkage map; quantitative trait loci; sex-specific expression; Y chromosome |
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Alleles of sexually antagonistic genes (i.e., genes with alleles affecting fitness in opposite directions in the two sexes) can avoid expression in the sex to which they are detrimental via two processes: they are subsumed into the nonrecombining, sex-determining portion of the sex chromosomes or they evolve sex-limited expression. The former is considered more likely and leads to Y-chromosome degeneration. We mapped quantitative trait loci of major effect for sexually dimorphic traits of Silene latifolia to the recombining portions of the sex chromosomes and found them to exhibit sex-specific expression, with the Y chromosome in males controlling a relatively larger proportion of genetic variance than the X in females and the average autosome. Both reproductive and ecophysiological traits map to the recombining region of the sex chromosomes. We argue that genetic correlations among traits maintain recombination and polymorphism for these genes because of balancing selection in males, whereas sex-limited expression represses detrimental alleles in females. Our data suggest that the Y chromosome of S. latifolia plays a major role in the control of key metabolic activities beyond reproductive functions. |
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Indiana Univ, Dept Biol, Bloomington, IN 47405 USA, Email: ivan.scotti@kourou.cirad.fr |
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SOC STUDY EVOLUTION |
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0014-3820 |
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ISI:000241226800005 |
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EcoFoG @ eric.marcon @ |
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174 |
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Author |
Flores, O.; Rossi, V.; Mortier, F. |
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Title |
Autocorrelation offsets zero-inflation in models of tropical saplings density |
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Journal Article |
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2009 |
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Ecological Modelling |
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Ecol. Model. |
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220 |
Issue |
15 |
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1797-1809 |
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Hierarchical Bayesian Modelling; Conditional Auto-Regressive model; Variable selection; Zero-Inflated Poisson; Posterior predictive; Paracou; French Guiana |
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Abstract |
Modelling the local density of tropical saplings can provide insights into the ecological processes that drive species regeneration and thereby help predict population recovery after disturbance. Yet, few studies have addressed the challenging issues in autocorrelation and zero-inflation of local density. This paper presents Hierarchical Bayesian Modelling (HBM) of sapling density that includes these two features. Special attention is devoted to variable selection, model estimation and comparison. We developed a Zero-Inflated Poisson (ZIP) model with a latent correlated spatial structure and compared it with non-spatial ZIP and Poisson models that were either autocorrelated (Spatial Generalized Linear Mixed, SGLM) or not (generalized linear models, GLM). In our spatial models, local density autocorrelation was modeled by a Conditional Auto-Regressive (CAR) process. 13 explicative variables described ecological conditions with respect to topography, disturbance, stand structure and intraspecific processes. Models were applied to six tropical tree species with differing biological attributes: Oxandra asbeckii, Eperua falcata, Eperua grandiflora, Dicorynia guianensis, Qualea rosea, and Tachigali melinonii. We built species-specific models using a simple method of variable selection based on a latent binary indicator. Our spatial models showed a close correlation between observed and estimated densities with site spatial structure being correctly reproduced. By contrast, the non-spatial models showed poor fits. Variable selection highlighted species-specific requirements and susceptibility to local conditions. Model comparison overall showed that the SGLM was the most accurate explanatory and predictive model. Surprisingly, zero-inflated models performed less well. Although the SZIP model was relevant with respect to data distribution, and more flexible with respect to response curves, its model complexity caused marked variability in parameter estimates. In the SUM, the spatial process alone accounted for zero-inflation in the data. A refinement of the hypotheses employed at the process level could compensate for distribution flaws at the data level. This study emphasized the importance of the HBM framework in improving the modelling of density-environment relationships. (C) 2008 Elsevier B.V. All rights reserved. |
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[Flores, O.] CNRS, Ctr Ecol Fonct & Evolut, UMR 5175, F-34293 Montpellier 5, France, Email: olivierflores@free.fr |
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ELSEVIER SCIENCE BV |
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0304-3800 |
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ISI:000267585400007 |
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EcoFoG @ eric.marcon @ |
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201 |
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