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Tysklind, N.; Blanc-Jolivet, C.; Mader, M.; Meyer-Sand, B.R.V.; Paredes-Villanueva, K.; Honorio Coronado, E.N.; García-Dávila, C.R.; Sebbenn, A.M.; Caron, H.; Troispoux, V.; Guichoux, E.; Degen, B. |
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Title |
Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species |
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Journal Article |
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Year |
2019 |
Publication |
Conservation Genetics Resources |
Abbreviated Journal |
Conserv. Gen. Res. |
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Volume |
11 |
Issue |
3 |
Pages  |
337-339 |
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Keywords |
Carapa guianensis; Carapa surinamensis; DNA-fingerprints; Geographical origin; MassARRAY; MiSeq; RADSeq; Tropical timber |
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Abstract |
Low coverage MiSeq genome sequencing and restriction associated DNA sequencing (RADseq) were used to identify nuclear and plastid SNP and INDEL genetic markers in Carapa guianensis. 261 genetic markers including 237 nuclear SNPs, 22 plastid SNPs, and 2 plastid INDELs are described based on 96 genotyped individuals from French Guiana, Brazil, Peru, and Bolivia. The best 117 SNPs for identifying population structure and performing individual assignment are assembled into four multiplexes for MassARRAY genotyping. |
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BIOGECO, INRA, University Bordeaux, Cestas, 33610, France |
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Springer Netherlands |
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18777252 (Issn) |
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EcoFoG @ webmaster @ |
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909 |
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Ruelle, J.; Beauchene, J.; Yamamoto, H.; Thibaut, B. |
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Title |
Variations in physical and mechanical properties between tension and opposite wood from three tropical rainforest species |
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Journal Article |
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Year |
2011 |
Publication |
Wood Science and Technology |
Abbreviated Journal |
Wood Sci. Technol. |
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45 |
Issue |
2 |
Pages |
339-357 |
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Growth strains were measured in situ in nine trees of three species from a French Guiana tropical rainforest in a clearly active verticality restoration process. The aim was to detect tension wood within the samples. Wood specimens were cut in the vicinity of the growth strain measurements in order to determine the microfibril angle and some mechanical and physical properties. As suspected, tensile growth strain was much higher in tension wood zones, as shown by the slightly higher longitudinal modulus of elasticity. Conversely, tension wood showed reduced compression strength. Longitudinal shrinkage was much higher in tension wood than in opposite wood. Clear relationships between the microfibril angle and longitudinal properties were noted in comparison (i) with those observed in gymnosperm compression wood and (ii) with expected relationships from the organization of wood fibres cell wall structure. |
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[Ruelle, Julien; Yamamoto, Hiroyuki] Nagoya Univ, Grad Sch Bioagr Sci, Nagoya, Aichi 4648601, Japan, Email: julien.ruelle@ecofog.gf |
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Springer |
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0043-7719 |
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ISI:000289477300013 |
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EcoFoG @ webmaster @ |
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305 |
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Teixeia, G. A. ; de Aguiar, H.J.A.C. ; Petitclerc, F. ; Orivel, J. ; Lopes, D.M. ; Barros, L.A.C. |
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Title |
Evolutionary insights into the genomic organization of major ribosomal DNA in ant chromosomes |
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Journal Article |
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Year |
2021 |
Publication |
Insect Molecular Biology |
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Volume |
30 |
Issue |
3 |
Pages |
340-354 |
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The major rDNA genes are composed of tandem repeats and are part of the nucleolus organizing regions (NORs). They are highly conserved and therefore useful in understanding the evolutionary patterns of chromosomal locations. The evolutionary dynamics of the karyotype may affect the organization of rDNA genes within chromosomes. In this study, we physically mapped 18S rDNA genes in 13 Neotropical ant species from four subfamilies using fluorescence in situ hybridization. Furthermore, a survey of published rDNA cytogenetic data for 50 additional species was performed, which allowed us to detect the evolutionary patterns of these genes in ant chromosomes. Species from the Neotropical, Palearctic, and Australian regions, comprising a total of 63 species from 19 genera within six subfamilies, were analysed. Most of the species (48 out of 63) had rDNA genes restricted to a single chromosome pair in their intrachromosomal regions. The position of rDNA genes within the chromosomes appears to hinder their dispersal throughout the genome, as translocations and ectopic recombination are uncommon in intrachromosomal regions because they can generate meiotic abnormalities. Therefore, rDNA genes restricted to a single chromosome pair seem to be a plesiomorphic feature in ants, while multiple rDNA sites, observed in distinct subfamilies, may have independent origins in different genera. |
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Royal Entomological Society |
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EcoFoG @ webmaster @ |
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1048 |
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Author |
Coutand, C.; Chevolot, M.; Lacointe, A.; Rowe, N.; Scotti, I. |
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Title |
Mechanosensing of stem bending and its interspecific variability in five neotropical rainforest species |
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Journal Article |
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Year |
2010 |
Publication |
Annals of Botany |
Abbreviated Journal |
Ann. Bot. |
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Volume |
105 |
Issue |
2 |
Pages |
341-347 |
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Keywords |
Mechanosensing; interspecific variability; trees; lianas; rain forest; neotropical species; bending; biomechanics; Bauhinia; Eperua; Symphonia; Tachigali |
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In rain forests, sapling survival is highly dependent on the regulation of trunk slenderness (height/diameter ratio): shade-intolerant species have to grow in height as fast as possible to reach the canopy but also have to withstand mechanical loadings (wind and their own weight) to avoid buckling. Recent studies suggest that mechanosensing is essential to control tree dimensions and stability-related morphogenesis. Differences in species slenderness have been observed among rainforest trees; the present study thus investigates whether species with different slenderness and growth habits exhibit differences in mechanosensitivity. Recent studies have led to a model of mechanosensing (sum-of-strains model) that predicts a quantitative relationship between the applied sum of longitudinal strains and the plant's responses in the case of a single bending. Saplings of five different neotropical species (Eperua falcata, E. grandiflora, Tachigali melinonii, Symphonia globulifera and Bauhinia guianensis) were subjected to a regimen of controlled mechanical loading phases (bending) alternating with still phases over a period of 2 months. Mechanical loading was controlled in terms of strains and the five species were subjected to the same range of sum of strains. The application of the sum-of-strain model led to a dose-response curve for each species. Dose-response curves were then compared between tested species. The model of mechanosensing (sum-of-strain model) applied in the case of multiple bending as long as the bending frequency was low. A comparison of dose-response curves for each species demonstrated differences in the stimulus threshold, suggesting two groups of responses among the species. Interestingly, the liana species B. guianensis exhibited a higher threshold than other Leguminosae species tested. This study provides a conceptual framework to study variability in plant mechanosensing and demonstrated interspecific variability in mechanosensing. |
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[Coutand, Catherine; Lacointe, Andre] Univ Clermont Ferrand, INRA, PIAF, UMR 547, F-63000 Clermont Ferrand, France, Email: coutand@clermont.inra.fr |
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OXFORD UNIV PRESS |
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0305-7364 |
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ISI:000274347000025 |
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no |
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Call Number |
EcoFoG @ eric.marcon @ |
Serial |
71 |
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Author |
Ruelle, J.; Clair, B.; Beauchene, J.; Prevost, M.F.; Fournier, M. |
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Title |
Tension wood and opposite wood in 21 tropical rain forest species 2. Comparison of some anatomical and ultrastructural criteria |
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Journal Article |
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Year |
2006 |
Publication |
IAWA Journal |
Abbreviated Journal |
IAWA J. |
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Volume |
27 |
Issue |
4 |
Pages |
341-376 |
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Keywords |
tension wood; opposite wood; tropical rain forest; vessels; wood anatomy; wood fibre |
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Abstract |
The anatomy of tension wood and opposite wood was compared in 21 tropical rain forest trees from 21 species belonging to 18 families from French Guyana. Wood specimens were taken from the upper and lower sides of naturally tilted trees. Measurement of the growth stress level ensured that the two samples were taken from wood tissues in a different mechanical state: highly tensile-stressed wood on the upper side, called tension wood and normally tensile-stressed wood on the lower side, called opposite wood. Quantitative parameters relating to fibres and vessels were measured on transverse sections of both tension and opposite wood to check if certain criteria can easily discriminate the two kinds of wood. We observed a decrease in the frequency of vessels in the tension wood in all the trees studied. Other criteria concerning shape and surface area of the vessels, fibre diameter or cell wall thickness did not reveal any general trend. At the ultrastructural level, we observed that the microfibril angle in the tension wood sample was lower than in opposite wood in all the trees except one (Licania membranacea). |
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UAG, ENGREF,UMR Ecol Forets Guyane, INRA,ECOFOG, CIRAD,CNRS, F-97379 Kourou, Guyana, Email: ruelle_j@kourou.cirad.fr |
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INT ASSOC WOOD ANATOMISTS |
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0928-1541 |
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ISI:000242437400001 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
171 |
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Gibernau, M.; Orivel, J.; Delabie, J.H.C.; Barabe, D.; Dejean, A. |
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An asymmetrical relationship between an arboreal ponerine ant and a trash-basket epiphyte (Araceae) RID D-4390-2009 RID C-4034-2011 |
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Journal Article |
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Year |
2007 |
Publication |
Biological Journal of the Linnean Society |
Abbreviated Journal |
Biol. J. Linnean Soc. |
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Volume |
91 |
Issue |
3 |
Pages |
341-346 |
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Keywords |
hanging soil; mutualism; nest site selection; plant protection |
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The relationship between ants and Philodendron insigne, a trash-basket epiphyte abundant along streams, was studied in French Guiana. Only a few (3%) of the young plants sheltered ants, whereas 90% of the mature individuals did. The most frequent associate was Odontomachus hastatus (Fabricius), an arboreal ponerine ant, and its nests were almost entirely (94.4%) located in P. insigne root clusters. Experimental choice tests conducted on O. hastatus workers confirmed their preference for P. insigne. We propose that the interactions between P. insigne and ants may be intermediate between non-obligatory, reward-based interactions and obligatory, specific ant-myrmecophyte interactions because (1) almost all mature P. insigne individuals are associated with ants; (2) O. hastatus is the most frequent when diverse ants nest in its root clusters; (3) ants colonize mature P. insigne, but rarely young individuals; (4) ants, particularly O. hastatus, protect the foliage of their host; and (5) at least one ant species, O. hastatus, prefers P. insigne over other host plants. The latter relationship is asymmetrical because P. insigne is inhabited by diverse ants whereas O. hastatus nests almost exclusively in P. insigne. (c) 2007 The Linnean Society of London, Biological Journal of the Linnean Society, 2007, 91, 341-346. |
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Univ Toulouse 3, Lab Evolut & Divers Biol, UMR 5174, CNRS,UPS, F-31062 Toulouse 9, France, Email: dejean@cict.fr |
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Blackwell Publishing |
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English |
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0024-4066 |
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WOS:000247817100001 |
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no |
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EcoFoG @ webmaster @ |
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356 |
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Bertani, S.; Houel, E.; Jullian, V.; Bourdy, G.; Valentin, A.; Stien, D.; Deharo, E. |
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Title |
New findings on Simalikalactone D, an antimalarial compound from Quassia amara L. (Simaroubaceae) |
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Journal Article |
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Year |
2012 |
Publication |
Experimental Parasitology |
Abbreviated Journal |
Exp. Parasitol. |
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Volume |
130 |
Issue |
4 |
Pages |
341-347 |
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Antimalarial; Plasmodium; Quassia amara; Quassinoid; Simalikalactone d |
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Quassia amara L. (Simaroubaceae) is a species widely used as tonic and is claimed to be an efficient antimalarial all over the Northern part of the Amazon basin. Quassinoid compound Simalikalactone D (SkD) has been shown to be one of the molecules responsible for the antiplasmodial activity of a watery preparation made out of juvenile fresh leaves of this plant. Because of its strong antimalarial activity, we decided to have a further insight of SkD pharmacological properties, alone or in association with classical antimalarials. At concentrations of up to 200 μM, we showed herein that SkD did not exert any apoptotic or necrotic activities in vitro on lymphoblastic cells. However, an antiproliferative effect was evident at concentrations higher than 45. nM. SkD was inefficient at inhibiting heme biomineralization and the new permeability pathways induced by the parasite in the host erythrocyte membrane. With respect to Plasmodium falciparum erythrocytic stages, SkD was almost inactive on earlier and later parasite stages, but potently active at the 30th h of parasite cycle when DNA replicates in mature trophozoites. In vitro combination studies with conventional antimalarial drugs showed that SkD synergizes with atovaquone (ATO). The activity of ATO on the Plasmodium mitochondrial membrane potential was enhanced by SkD, which on its own had a poor effect on this cellular parameter. © 2012 Elsevier Inc. |
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UMR152 IRD-UPS, Institut de Recherche pour le Développement (IRD), Universidad Peruana Cayetano Heredia (UPCH), Lima, Peru |
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00144894 (Issn) |
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Export Date: 24 April 2012; Source: Scopus; Coden: Expaa; doi: 10.1016/j.exppara.2012.02.013; Language of Original Document: English; Correspondence Address: Deharo, E.; UMR152 IRD-UPS, Faculté de Pharmacie, 35 chemin des maraîchers, 31062 Toulouse cedex 9, France; email: ericdeharo@gmail.com |
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EcoFoG @ webmaster @ |
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395 |
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Khia, A.; Ghanmi, M.; Satrani, B.; Aafi, A.; Aberchane, M.; Quaboul, B.; Chaouch, A.; Amusant, N.; Charrouf, Z. |
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Title |
Effect of provenance on the chemical and microbiological quality of essential oils of Rosmarinus officinalis L. in Morocco |
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Journal Article |
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Year |
2014 |
Publication |
Phytotherapie |
Abbreviated Journal |
Phytotherapie |
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12 |
Issue |
6 |
Pages |
341-347 |
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Antibacterial; Antifungal activity; Chemical composition; Essential Oil; Provenance; Rosmarinus officinalis |
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This study is an assessment of the chemical quality and evaluation of antibacterial and antifungal activity of rosemary’s essential oils from three regions of Morocco (Rchida and Berkine/Eastern Morocco and Aknoul/North East of Morocco. The essential oils obtained by hydrodistillation of the leaves and young twigs of rosemary, were analyzed by GC / FID and GC/ MS. These essential oils are characterized by the presence of α and β-pinene, camphene, 1,8-cineole and camphor compounds. The quality of these essential oils met the AFNOR NF ISO 4730 rosemary Morocco kind (1,8-cineole). The evaluation of the antimicrobial activity of essential oils of Rosmarinus officinalis showed low efficacy against microorganisms tested which were all inhibited from 1/100 v/v except for Penicillium expansum whose growth was stopped at the concentration 1/250 v/v. |
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Département d’Environnement et Sociétés, UMR EcoFoG, CIRAD, BP 732Kourou cedex, French Guiana |
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Export Date: 31 December 2014 |
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EcoFoG @ webmaster @ |
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574 |
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Sebbenn, A.M.; Blanc-Jolivet, C.; Mader, M.; Meyer-Sand, B.R.V.; Paredes-Villanueva, K.; Honorio Coronado, E.N.; García-Dávila, C.; Tysklind, N.; Troispoux, V.; Delcamp, A.; Degen, B. |
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Title |
Nuclear and plastidial SNP and INDEL markers for genetic tracking studies of Jacaranda copaia |
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Journal Article |
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Year |
2019 |
Publication |
Conservation Genetics Resources |
Abbreviated Journal |
Conserv. Gen. Res. |
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Volume |
11 |
Issue |
3 |
Pages |
341-343 |
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DNA fingerprints; Geographical origin; Jacaranda copaia; MassARRAY; MiSeq; RADSeq; Tropical timber |
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Nuclear and plastidial single nucleotide polymorphism (SNP) and INDEL markers were developed using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing for population genetics and timber tracking purposes in the Neotropical timber species Jacaranda copaia. We used 407 nuclear SNPs, 29 chloroplast, and 31 mitochondrial loci to genotype 92 individuals from Brazil, Bolivia, French Guiana, and Peru. Based on high amplification rates and genetic differentiation among populations, 113 nuclear SNPs, 11 chloroplast, and 4 mitochondrial loci were selected, and their use validated for genetic tracking of timber origin. |
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BIOGECO, INRA, Univ. Bordeaux, Cestas, 33610, France |
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Springer Netherlands |
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18777252 (Issn) |
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EcoFoG @ webmaster @ |
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907 |
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Author |
Coste, S.; Roggy, J.C.; Sonnier, G.; Dreyer, E. |
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Title |
Similar irradiance-elicited plasticity of leaf traits in saplings of 12 tropical rainforest tree species with highly different leaf mass to area ratio |
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Journal Article |
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Year |
2010 |
Publication |
Functional Plant Biology |
Abbreviated Journal |
Funct. Plant Biol. |
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37 |
Issue |
4 |
Pages |
342-355 |
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functional diversity; light availability; photosynthetic nitrogen use efficiency; photosynthetic capacity; tropical rainforest |
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Leaf traits of tropical tree species display an important inter-specific diversity, as detected for instance in the large range of values of leaf mass : area ratio (LMA). They also demonstrate a large irradiance-elicited plasticity, but there is still debate whether this plasticity differs among species. To address this question, leaf traits were recorded on saplings from 12 rainforest tree species in French Guiana, grown under approximately 5, 10 and 20% relative irradiance. Fifteen structural and physiological leaf traits related to photosynthesis were measured. The irradiance-elicited plasticity was quantified using a relative distance plasticity index. A large inter-specific diversity was detected for all leaf traits. A principal component analysis opposed species with a large mass-based photosynthesis, respiration, N content and photosynthetic nitrogen use efficiency, to species with a large leaf mass : area ratio, LMA. The two pioneer species used in this study displayed the largest photosynthetic capacity (and lowest LMA) and ranked at one end of the species continuum. Relative irradiance affected almost all traits with the exception of mass-based photosynthesis. A weak interaction was found between species and relative irradiance and the species ranking was maintained among relative irradiance treatments for the majority of the traits. A principal component analysis of the values of relative-distance plasticity index failed to reveal any consistent patterns of traits or species. We concluded that irradiance-elicited plasticity of leaf traits was similar among species irrespective of LMA and successional status, despite the occurrence of a large inter-specific diversity for the investigated traits. |
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Address |
[Dreyer, Erwin] Nancy Univ, INRA, UMR Ecol & Ecophysiol Forestieres 1137, IFR Ecosyst Forestiers Agroressources Biomol & Al, F-54280 Champenoux, France, Email: dreyer@nancy.inra.fr |
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CSIRO PUBLISHING |
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ISSN |
1445-4408 |
ISBN |
|
Medium |
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| |
Area |
|
Expedition |
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Conference |
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|
| |
Notes |
ISI:000275979100009 |
Approved |
no |
|
| |
Call Number |
EcoFoG @ eric.marcon @ |
Serial |
63 |
|
| Permanent link to this record |
