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Author  |
Maron, P.A.; Schimann, H.; Ranjard, L.; Brothier, E.; Domenach, A.M.; Lensi, R.; Nazaret, S. |
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Title |
Evaluation of quantitative and qualitative recovery of bacterial communities from different soil types by density gradient centrifugation |
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Journal Article |
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Year |
2006 |
Publication |
European Journal of Soil Biology |
Abbreviated Journal |
Eur. J. Soil Biol. |
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Volume |
42 |
Issue |
2 |
Pages |
65-73 |
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Keywords |
bacterial community; soil; density gradient; DNA fingerprint |
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Abstract |
Extracting and purifying a representative fraction of bacteria from soil is necessary for the application of many techniques of microbial ecology. Here the influence of different soil types on the quantitative and qualitative recovery of bacteria by soil grinding and Nycodenz density gradient centrifugation was investigated. Three soils presenting contrasted physicochemical characteristics were used for this study. For each soil, the total (AODC: acridine orange direct count) and culturable (cfa: colony-forming units) bacterial densities were measured in three distinct fractions: (i) the primary soil, (ii) the soil pellet (soil remaining after centrifugation), and (iii) the extracted cells. The automated-ribosomal intergenic spacer analysis (A-RISA) was used to characterize the community structure directly from the DNA extracted from each fraction. The physicochemical characteristics of soils were found to influence both the efficiency of bacterial cell recovery and the representativeness of the extracted cells in term of community structures between the different fractions. Surprisingly, the most representative extracted cells were obtained from the soil exhibiting the lowest efficiency of cell recovery. Our results demonstrated that quantitative and qualitative cell recovery using Nycodenz density gradient centrifugation are not necessarily related and could be differentially biased according to soil type. (c) 2006 Elsevier SAS. All rights reserved. |
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Univ Lyon 1, CNRS, UMR 5557, Ctr Microbial Ecol, F-69622 Villeurbanne, France, Email: nazaret@biomserv.univ-lyon1.fr |
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ELSEVIER FRANCE-EDITIONS SCIENTIFIQUES MEDICALES ELSEVIER |
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1164-5563 |
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ISI:000238534500001 |
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EcoFoG @ eric.marcon @ |
Serial |
181 |
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Marti, G.; Eparvier, V.; Litaudon, M.; Grellier, P.; Gueritte, F. |
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Title |
A New Xanthone from the Bark Extract of Rheedia acuminata and Antiplasmodial Activity of Its Major Compounds |
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Journal Article |
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Year |
2010 |
Publication |
Molecules |
Abbreviated Journal |
Molecules |
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Volume |
15 |
Issue |
10 |
Pages |
7106-7114 |
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Keywords |
Rheedia acuminata, Clusiaceae; xanthones; antiplasmodial activity; cytotoxicity |
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Abstract |
Bioassay-guided fractionation of the ethyl acetate bark extract of Rheedia acuminata led to the isolation of the new compound 1,5,6-trihydroxy-3-methoxy-7-geranyl-xanthone (1), together with four known compounds 2-5. These compounds were tested in vitro for their antiplasmodial activity on a chloroquine-resistant strain of Plasmodium falciparum (FcB1) and for their cytotoxicity against the human diploid embryonic lung cell line MRC-5. |
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[Eparvier, Veronique] CNRS, UPS2561, F-97300 Cayenne, France, Email: guillaume.marti@icsn.cnrs-gif.fr |
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MDPI AG |
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1420-3049 |
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ISI:000283587400030 |
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EcoFoG @ webmaster @ |
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282 |
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Marti, G.; Eparvier, V.; Moretti, C.; Prado, S.; Grellier, P.; Hue, N.; Thoison, O.; Delpech, B.; Gueritte, F.; Litaudon, M. |
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Title |
Antiplasmodial benzophenone derivatives from the root barks of Symphonia globulifera (Clusiaceae) |
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Journal Article |
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Year |
2010 |
Publication |
Phytochemistry |
Abbreviated Journal |
Phytochemistry |
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Volume |
71 |
Issue |
8-9 |
Pages |
964-974 |
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Keywords |
Symphonia globulifera; Clusiaceae; Benzophenone; Symphonone; Antiplasmodial; LC/ESI-MS |
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In an effort to find antimalarial drugs, a systematic in vitro evaluation on a chloroquine-resistant strain of Plasmodium falciparum (FcB1) was undertaken on sixty plant extracts collected in French Guiana. The ethyl acetate extract obtained from the root barks of Symphonia globulifera exhibited a strong antiplasmodial activity (97% at 10 μg/ml). The phytochemical investigation of this extract led to the isolation of nine polycyclic polyprenylated acylphloroglucinol (PPAPs) compounds and two oxidized derivatives. All compounds showed antiplasmodial activity with IC(50)s ranged from 2.1 to 10.1 μM. A LC/ESI-MSn study performed on polyprenylated benzophenones previously isolated from Moronobea coccinea provided a reliable method for their detection in the extract and structural elucidation. (C) 2010 Elsevier Ltd. All rights reserved. |
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[Marti, Guillaume; Hue, Nathalie; Thoison, Odile; Delpech, Bernard; Gueritte, Francoise; Litaudon, Marc] CNRS, Inst Chim Subst Nat, Ctr Rech Gif, F-91198 Gif Sur Yvette, France, Email: marc.litaudon@icsn.cnrs-gif.fr |
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PERGAMON-ELSEVIER SCIENCE LTD |
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0031-9422 |
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ISI:000279077400016 |
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no |
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Call Number |
EcoFoG @ webmaster @ |
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284 |
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Martin, J.M.; Roux, O.; Groc, S.; Dejean, A. |
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Title |
A type of unicoloniality within the native range of the fire ant Solenopsis saevissima |
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Journal Article |
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Year |
2011 |
Publication |
Comptes Rendus Biologies |
Abbreviated Journal |
C. R. Biol. |
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Volume |
334 |
Issue |
4 |
Pages |
307-310 |
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Keywords |
Ants; Solenopsis saevissima; Native range; Unicoloniality |
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To determine if a type of unicoloniality exists in the fire ant Solenopsis saevissima in its native range, we conducted intraspecific aggressiveness tests in French Guiana between workers originating from 15 human-disturbed sites. We identified two “colonial groups” spread over 54 km and 12.5 km, respectively. Workers from the same group never attacked each other, but inter-group confrontations resulted in a high level of aggressiveness. These large “colonial groups” enhances the threat occasioned by S. saevissima for both agriculture and the environment. (C) 2011 Academie des sciences. Published by Elsevier Masson SAS. All rights reserved. |
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[Martin, Jean-Michel; Roux, Olivier; Groc, Sarah; Dejean, Alain] Ecol Forets de Guyane UMR CNRS 8172, F-97379 Kourou, France, Email: alain.dejean@wanadoo.fr |
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Elsevier France-Editions Scientifiques Medicales Elsevier |
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1631-0691 |
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ISI:000290364200007 |
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no |
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EcoFoG @ webmaster @ |
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314 |
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Author |
Martos, F.; Dulormne, M.; Pailler, T.; Bonfante, P.; Faccio, A.; Fournel, J.; Dubois, M.-P.; Selosse, M.-A. |
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Title |
Independent recruitment of saprotrophic fungi as mycorrhizal partners by tropical achlorophyllous orchids |
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Journal Article |
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Year |
2009 |
Publication |
New Phytologist |
Abbreviated Journal |
New Phytologist |
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Volume |
184 |
Issue |
3 |
Pages |
668-681 |
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Keywords |
Mycoheterotrophy; Mycorrhizas; Orchids; Rainforests; Saprotrophic fungi; Stable isotopes |
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Abstract |
Mycoheterotrophic orchids have adapted to shaded forest understory by shifting to achlorophylly and receiving carbon from their mycorrhizal fungi. In temperate forests, they associate in a highly specific way with fungi forming ectomycorrhizas on nearby trees, and exploiting tree photosynthates. However, many rainforests lack ectomycorrhizal fungi, and there is evidence that some tropical Asiatic species associate with saprotrophic fungi. To investigate this in different geographic and phylogenetic contexts, we identified the mycorrhizal fungi supporting two tropical mycoheterotrophic orchids from Mascarene (Indian Ocean) and Caribbean islands. We tested their possible carbon sources by measuring natural nitrogen (15N) and carbon (13C) abundances. Saprotrophic basidiomycetes were found: Gastrodia similis associates with a wood-decaying Resinicium (Hymenochaetales); Wullschlaegelia aphylla associates with both litter-decaying Gymnopus and Mycena species, whose rhizomorphs link orchid roots to leaf litter. The 15N and 13C abundances make plausible food chains from dead wood to G. similis and from dead leaves to W. aphylla. We propose that temperature and moisture in rainforests, but not in most temperate forests, may favour sufficient saprotrophic activity to support development of mycoheterotrophs. By enlarging the spectrum of mycorrhizal fungi and the level of specificity in mycoheterotrophic orchids, this study provides new insights on orchid and mycorrhizal biology in the tropics. © 2009 New Phytologist. |
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Dipartimento di Biologia Vegetale dell'Università, Istituto per la Protezione Delle Piante – CNR, Viale Mattioli 25, I-10125 Torino, Italy |
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Notes |
Cited By :65; Export Date: 7 February 2017 |
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no |
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Call Number |
EcoFoG @ webmaster @ |
Serial |
728 |
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Author |
Masse, P.S.M.; Kenne, M.; Mony, R.; Dejean, A.; Tindo, M. |
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Title |
Initial behavior in colony fragments of an introduced population of the invasive ant Wasmannia auropunctata |
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Journal Article |
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Year |
2011 |
Publication |
Comptes Rendus Biologies |
Abbreviated Journal |
C. R. Biol. |
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Volume |
334 |
Issue |
7 |
Pages |
572-576 |
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Aggregation; Death feigning; Thanatosis; Worker transportation; Biological invasion; Little fire ant |
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Abstract |
We investigated in the laboratory the initial behavior of propagules of the invasive ant Wasmannia auropunctata in Cameroon where it has been introduced. Both workers and queens at first feigned death (thanatosis), and then the workers slowly moved around the experimental arena; the queens did the same about 10 seconds later. Each queen antennated selected workers that then aggregated together by grasping the hind leg of another ant with their mandibles. When encountering the queen again, the lead worker climbed up the queen's hind leg and onto her back, followed by some other individuals. The remaining workers followed the queen to a location in the experimental arena. When brood was present, the workers transferred it to this location. Orphaned workers did not aggregate, but gathered the brood together and took care of it. By permitting propagules to survive, these behaviors likely contribute to the success of W. auropunctata as an invader. (C) 2011 Academie des sciences. Published by Elsevier Masson SAS. All rights reserved. |
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[Kenne, M; Mony, R; Tindo, M] Univ Douala, Fac Sci, Dept Biol Organismes Anim, Douala, Cameroon, Email: tindodouala@yahoo.com |
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Elsevier France-Editions Scientifiques Medicales Elsevier |
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1631-0691 |
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WOS:000293673300010 |
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no |
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EcoFoG @ webmaster @ |
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332 |
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Mathieu, A.; Letort, V.; Cournède, P.H.; Zhang, B.G.; Heuret, P.; De Reffye, P. |
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Title |
Oscillations in functional structural plant growth models |
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Journal Article |
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2012 |
Publication |
Mathematical Modelling of Natural Phenomena |
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7 |
Issue |
6 |
Pages |
47-66 |
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Cecropia trees; Cucumber plant; Dynamic system of plant growth; Functional-structural plant models; GreenLab |
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Abstract |
The dynamic model of plant growth GreenLab describes plant architecture and functional growth at the level of individual organs. Structural development is controlled by formal grammars and empirical equations compute the amount of biomass produced by the plant, and its partitioning among the growing organs, such as leaves, stems and fruits. The number of organs initiated at each time step depends on the trophic state of the plant, which is evaluated by the ratio of biomass available in plant to the demand of all the organs. The control of the plant organogenesis by this variable induces oscillations in the simulated plant behaviour. The mathematical framework of the GreenLab model allows to compute the conditions for the generation of oscillations and the value of the period according to the set of parameters. Two case-studies are presented, corresponding to emergence of oscillations associated to fructification and branching. Similar alternating patterns are commonly reported by botanists. In this article, two examples were selected: alternate patterns of fruits in cucumber plants and alternate appearances of branches in Cecropia trees. The model was calibrated from experimental data collected on these plants. It shows that a simple feedback hypothesis of trophic control on plant structure allows the emergence of cyclic patterns corresponding to the observed ones. © EDP Sciences, 2012. |
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CIRAD, UMR AMAP, Montpellier, France |
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Export Date: 27 December 2012; Source: Scopus |
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EcoFoG @ webmaster @ |
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452 |
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Author |
Maurice, L.; López, F.; Becerra, S.; Jamhoury, H.; Le Menach, K.; Dévier, M.-H.; Budzinski, H.; Prunier, J.; Juteau-Martineau, G.; Ochoa-Herrera, V.; Quiroga, D.; Schreck, E. |
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Title |
Drinking water quality in areas impacted by oil activities in Ecuador: Associated health risks and social perception of human exposure |
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Journal Article |
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Year |
2019 |
Publication |
Science of the Total Environment |
Abbreviated Journal |
Sci. Total Environ. |
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Volume |
690 |
Issue |
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Pages |
1203-1217 |
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Keywords |
Demineralized waters; Domestic waters; Hydrocarbons; Metal(loid)s; Oil activities; Social risk perception; Benzene refining; Health; Health risks; Hydrocarbons; Petroleum refineries; Petroleum refining; Polycyclic aromatic hydrocarbons; Potable water; Risk assessment; Risk perception; Toluene; Trace elements; Water quality; Water wells; Zinc; Arsenic concentration; Demineralized water; Domestic water; Information sources; Living conditions; Microbiological analysis; Natural backgrounds; Oil activities; Water distribution systems |
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Abstract |
The unregulated oil exploitation in the Northern Ecuadorian Amazon Region (NEAR), mainly from 1964 to the 90's, led to toxic compounds largely released into the environment. A large majority of people living in the Amazon region have no access to drinking water distribution systems and collects water from rain, wells or small streams. The concentrations of major ions, trace elements, PAHs (polycyclic aromatic hydrocarbons) and BTEX (benzene, toluene, ethylbenzene, xylenes) were analyzed in different water sources to evaluate the impacts of oil extraction and refining. Samples were taken from the NEAR and around the main refinery of the country (Esmeraldas Oil Refinery/State Oil Company of Ecuador) and were compared with domestic waters from the Southern region, not affected by petroleum activities. In most of the samples, microbiological analysis revealed a high level of coliforms representing significant health risks. All measured chemical compounds in waters were in line with national and international guidelines, except for manganese, zinc and aluminum. In several deep-water wells, close to oil camps, toluene concentrations were higher than the natural background while PAHs concentrations never exceeded individually 2 ng·L−1. Water ingestion represented 99% of the total exposure pathways for carcinogenic and non-carcinogenic elements (mainly zinc) in adults and children, while 20% to 49% of the Total Cancer Risk was caused by arsenic concentrations. The health index (HI) indicates acceptable chronic effects for domestic use according the US-EPA thresholds. Nevertheless, these limits do not consider the cocktail effects of metallic and organic compounds. Furthermore, they do not include the social determinants of human exposure, such as socio-economic living conditions or vulnerability. Most (72%) of interviewed families knew sanitary risks but a discrepancy was observed between knowledge and action: religious beliefs, cultural patterns, information sources, experience and emotions play an important role front to exposure. © 2019 |
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Department of Environmental Sciences and Engineering, Gillings School of Global Public Health, University of North Carolina at Chapel HillNC 2759, United States |
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Elsevier B.V. |
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00489697 (Issn) |
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EcoFoG @ webmaster @ |
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877 |
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Mayer, V.E.; Lauth, J.; Orivel, J. |
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Title |
Convergent structure and function of mycelial galleries in two unrelated Neotropical plant-ants |
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Journal Article |
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2017 |
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Insectes Sociaux |
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64 |
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3 |
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365-371 |
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The construction process and use of galleries by Azteca brevis (Myrmicinae: Dolichoderinae) inhabiting Tetrathylacium macrophyllum (Salicaceae) were compared with Allomerus decemarticulatus (Myrmicinae: Solenopsidini) galleries on Hirtella physophora (Chrysobalanaceae). Though the two ant species are phylogenetically distant, the gallery structure seems to be surprisingly similar and structurally convergent: both are pierced with numerous holes and both ant species use Chaetothyrialean fungi to strengthen the gallery walls. Al. decemarticulatus is known to use the galleries for prey capture and whether this is also the case for Az. brevis was tested in field experiments. We placed Atta workers as potential prey/threat on the galleries and recorded the behaviour of both ant species. We found considerable behavioural differences between them: Al. decemarticulatus was quicker and more efficient at capture than was Az. brevis. While most Atta workers were captured after the first 5 min by Al. decemarticulatus, significantly fewer were captured by Az. brevis even after 20 min. Moreover, the captured Atta were sometimes simply discarded and not taken to the nest by Az. brevis. As a consequence, the major function of the galleries built by Az. brevis may, therefore, be defense against intruders in contrast to Al. decemarticulatus which uses them mainly for prey capture. This may be due to a higher need for protein in Al. decemarticulatus compared to coccid-raising Az. brevis. |
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1420-9098 |
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EcoFoG @ webmaster @ Mayer2017 |
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784 |
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Ménard, L.; McKey, D.; Mühlen, G.S.; Clair, B.; Rowe, N.P. |
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The Evolutionary Fate of Phenotypic Plasticity and Functional Traits under Domestication in Manioc: Changes in Stem Biomechanics and the Appearance of Stem Brittleness |
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Journal Article |
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2013 |
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PLoS ONE |
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PLoS ONE |
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8 |
Issue |
9 |
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e74727 |
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Domestication can influence many functional traits in plants, from overall life-history and growth form to wood density and cell wall ultrastructure. Such changes can increase fitness of the domesticate in agricultural environments but may negatively affect survival in the wild. We studied effects of domestication on stem biomechanics in manioc by comparing domesticated and ancestral wild taxa from two different regions of greater Amazonia. We compared mechanical properties, tissue organisation and wood characteristics including microfibril angles in both wild and domesticated plants, each growing in two different habitats (forest or savannah) and varying in growth form (shrub or liana). Wild taxa grew as shrubs in open savannah but as lianas in overgrown and forested habitats. Growth form plasticity was retained in domesticated manioc. However, stems of the domesticate showed brittle failure. Wild plants differed in mechanical architecture between shrub and liana phenotypes, a difference that diminished between shrubs and lianas of the domesticate. Stems of wild plants were generally stiffer, failed at higher bending stresses and were less prone to brittle fracture compared with shrub and liana phenotypes of the domesticate. Biomechanical differences between stems of wild and domesticated plants were mainly due to changes in wood density and cellulose microfibril angle rather than changes in secondary growth or tissue geometry. Domestication did not significantly modify “large-scale” trait development or growth form plasticity, since both wild and domesticated manioc can develop as shrubs or lianas. However, “finer-scale” developmental traits crucial to mechanical stability and thus ecological success of the plant were significantly modified. This profoundly influenced the likelihood of brittle failure, particularly in long climbing stems, thereby also influencing the survival of the domesticate in natural situations vulnerable to mechanical perturbation. We discuss the different selective pressures that could explain evolutionary modifications of stem biomechanical properties under domestication in manioc. © 2013 Ménard et al. |
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CNRS, UMR Ecologie des Forêts de Guyane (EcoFoG), Campus Agronomique, Kourou, French Guiana |
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Export Date: 13 September 2013; Source: Scopus; Art. No.: e74727; Coden: Polnc; doi: 10.1371/journal.pone.0074727; Language of Original Document: English; Correspondence Address: Rowe, N. P.; Université Montpellier 2, UMR AMAP, Montpellier, France; email: nrowe@cirad.fr |
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