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Dejean, A.; Labrière, N.; Touchard, A.; Petitclerc, F.; Roux, O. |
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Nesting habits shape feeding preferences and predatory behavior in an ant genus |
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2014 |
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Naturwissenschaften |
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Naturwissenschaften |
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101 |
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4 |
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323-330 |
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Ant genus Pseudomyrmex; Arboreal and ground nesting; Feeding preferences; Myrmecophytism; Predation |
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We tested if nesting habits influence ant feeding preferences and predatory behavior in the monophyletic genus Pseudomyrmex (Pseudomyrmecinae) which comprises terrestrial and arboreal species, and, among the latter, plant-ants which are obligate inhabitants of myrmecophytes (i.e., plants sheltering so-called plant-ants in hollow structures). A cafeteria experiment revealed that the diet of ground-nesting Pseudomyrmex consists mostly of prey and that of arboreal species consists mostly of sugary substances, whereas the plant-ants discarded all the food we provided. Workers forage solitarily, detecting prey from a distance thanks to their hypertrophied eyes. Approach is followed by antennal contact, seizure, and the manipulation of the prey to sting it under its thorax (next to the ventral nerve cord). Arboreal species were not more efficient at capturing prey than were ground-nesting species. A large worker size favors prey capture. Workers from ground- and arboreal-nesting species show several uncommon behavioral traits, each known in different ant genera from different subfamilies: leaping abilities, the use of surface tension strengths to transport liquids, short-range recruitment followed by conflicts between nestmates, the consumption of the prey's hemolymph, and the retrieval of entire prey or pieces of prey after having cut it up. Yet, we never noted group ambushing. We also confirmed that Pseudomyrmex plant-ants live in a kind of food autarky as they feed only on rewards produced by their host myrmecophyte, or on honeydew produced by the hemipterans they attend and possibly on the fungi they cultivate. © 2014 Springer-Verlag Berlin Heidelberg. |
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IRD, MIVEGEC (IRD 224-CNRS 5290-UM1-UM2), Équipe BEES, 911 avenue Agropolis, 34394 Montpellier Cedex 5, France |
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Springer Verlag |
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00281042 (Issn) |
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Export Date: 5 May 2014; Source: Scopus; Coden: Natwa; Language of Original Document: English; Correspondence Address: Dejean, A.; CNRS, Écologie des Forêts de Guyane (UMR-CNRS 8172), Campus Agronomique, BP 316, 97379 Kourou cedex, France; email: alain.dejean@wanadoo.fr |
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EcoFoG @ webmaster @ |
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539 |
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Carrias, J.-F.; Céréghino, R.; Brouard, O.; Pélozuelo, L.; Dejean, A.; Couté, A.; Corbara, B.; Leroy, C. |
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Two coexisting tank bromeliads host distinct algal communities on a tropical inselberg |
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Journal Article |
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2014 |
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Plant Biology |
Abbreviated Journal |
Plant Biol. |
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16 |
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5 |
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997-1004 |
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Algae; Bromeliaceae; Inselberg; Neotropics; Phytotelmata; Aechmea; algae; Bromeliaceae; Bumilleriopsis; Catopsis berteroniana; Chlorella (unclassified Chlorophyceae); Chlorella (unclassified Trebouxiophyceae); Chlorella sp.; Cyanobacteria; Eukaryota; Invertebrata; Protozoa |
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The tank bromeliads Aechmea aquilega (Salisb.) and Catopsis berteroniana (Schultes f.) coexist on a sun-exposed Neotropical inselberg in French Guiana, where they permit conspicuous freshwater pools to form that differ in size, complexity and detritus content. We sampled the algal communities (both eukaryotic and cyanobacterial taxa, including colourless forms) inhabiting either A. aquilega (n = 31) or C. berteroniana (n = 30) and examined differences in community composition and biomass patterns in relation to several biotic and abiotic variables. Chlorella sp. and Bumilleriopsis sp. were the most common taxa and dominated the algal biomass in A. aquilega and C. berteroniana, respectively. Using a redundancy analysis, we found that water volume, habitat complexity and the density of phagotrophic protozoa and collector-gatherer invertebrates were the main factors explaining the distribution of the algal taxa among the samples. Hierarchical clustering procedures based on abundance and presence/absence data clearly segregated the samples according to bromeliad species, revealing that the algal communities in the smaller bromeliad species were not a subset of the communities found in the larger bromeliad species. We conclude that, even though two coexisting tank bromeliad populations create adjacent aquatic habitats, each population hosts a distinct algal community. Hence, bromeliad diversity is thought to promote the local diversity of freshwater algae in the Neotropics. © 2014 German Botanical Society and The Royal Botanical Society of the Netherlands. |
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IRD, UMR AMAP (botAnique et bioinforMatique de l'Architecture des Plantes), Montpellier, France |
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Blackwell Publishing Ltd |
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14388677 (Issn) |
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Export Date: 2 September 2014; Coden: Pbiof; Correspondence Address: Carrias, J.-F.; Clermont Université, Université Blaise Pascal, BP 10448, F-63000 Clermont-Ferrand, France; email: j-francois.carrias@univ-bpclermont.fr; Funding Details: LQ13C020005, NSFC, National Natural Science Foundation of China |
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Malé, P.-J.G.; Leroy, C.; Lusignan, L.; Petitclerc, F.; Quilichini, A.; Orivel, J. |
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The reproductive biology of the myrmecophyte, Hirtella physophora, and the limitation of negative interactions between pollinators and ants |
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Journal Article |
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2015 |
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Arthropod-Plant Interactions |
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Arthropod-Plant Interactions |
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9 |
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1 |
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23-31 |
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Ant-plant; Ant–pollinator interactions; Floral structure and display; Plant reproductive biology; Spatial and temporal segregation |
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Myrmecophytism occurs in plants that offer ants a nesting space and, often, food rewards in exchange for protection from predators and competitors. Such biotic protection by ants can, however, interfere with the activity of pollinators leading to potential negative consequences for the plant’s reproduction. In this study, we focused on the association between the understory myrmecophyte, Hirtella physophora (Chrysobalanaceae), and its obligate ant partner, Allomerus decemarticulatus (Myrmicinae). We investigated the reproductive biology of H. physophora and the putative mechanisms that may limit ant–pollinator conflict. Our results show that H. physophora is an obligate outcrosser, self-incompatible, and potentially insect-pollinated species. The reproduction of H. physophora relies entirely on pollen transfer by pollinators that are likely quite specific. Potential interference between flower-visiting insects during pollination may also be lessened by a spatial and temporal segregation of ant and pollinator activities, thus enabling pollen transfer and fruit production. © 2014, Springer Science+Business Media Dordrecht. |
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IRD, UMR AMAP (botAnique et bioinforMatique de l’Architecture des Plantes), Boulevard de la Lironde, TA A-51/PS2Montpellier Cedex 5, France |
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Export Date: 9 April 2015 |
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EcoFoG @ webmaster @ |
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593 |
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Dezerald, O.; Céréghino, R.; Corbara, B.; Dejean, A.; Leroy, C. |
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Functional trait responses of aquatic macroinvertebrates to simulated drought in a Neotropical bromeliad ecosystem |
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Journal Article |
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2015 |
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Freshwater Biology |
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Freshwater Biology |
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60 |
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9 |
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1917-1929 |
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Food webs; Precipitations; Rainforests; Resistance/resilience; Tipping point |
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The duration of the dry seasons in south-eastern Amazonia is expected to increase. Little is known of how freshwater assemblages respond to drought in the humid rainforests and of the extent to which they resist the absence of rainfall before the collapse of the system. We manipulated rainshelters over tank-forming bromeliads (i.e. the interlocking leaf axils of these plants form wells that collect rainwater) to simulate an exceptionally long dry period (49 days, compared with a 10-year mean ± SD annual maximum number of 17 ± 5.3 days without rainfall at the study site) and then a rewetting period. By sampling weekly over 3 months, we followed the dynamics of the representation of abundance-weighted traits in invertebrate assemblages in these treatment plants and in a control group. The functional structure of assemblages was drought resistant until the water volume in the bromeliad pools dropped by 90%, when there was a sudden shift in the functional trait structure due to the loss of most populations except the drought-resistant culicids. Traits related to life history, body size and preferred food showed significant responses to drought. There was a convergence in the functional traits of species surviving in dry plants, strengthening the idea that environmental filtering, rather than stochasticity, determines the functional trajectory of aquatic assemblages during drought. At the end of the dry period, samples of the detritus potentially containing drought-resistant eggs/cysts (and eventually live larvae) were taken from the dry plants and rewetted in the laboratory, allowing us to distinguish resistant species from those requiring recolonisation via subsequent oviposition by adults from elsewhere. Patches of water-filled bromeliads persisting in the area provided the most important pool of colonists, and communities returned to the pre-disturbance state within 1-2 weeks of rewetting. Our results suggest that the functional trait structure of invertebrate assemblages in bromeliads could remain stable under scenarios of precipitation change that would triple the duration of current dry periods at a local scale. Future experiments should evaluate how environmental factors might alter the tipping point between resistance to drought and a collapse in ecosystem processes. © 2015 John Wiley & Sons Ltd. |
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IRD, UMR AMAP (botAnique et Modélisation de l'Architecture des Plantes et des vegetations), Boulevard de la Lironde, TA A-51/PS2, Montpellier Cedex 5, France |
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Export Date: 27 August 2015 |
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616 |
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Denis, T.; Hérault, B.; Brunaux, O.; Guitet, S.; Richard-Hansen, C. |
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Weak environmental controls on the composition and diversity of medium and large-sized vertebrate assemblages in neotropical rain forests of the Guiana Shield |
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2018 |
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Diversity and Distributions |
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Diversity Distrib. |
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24 |
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11 |
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1545-1559 |
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biodiversity; birds; functional traits; mammals; refugia hypothesis; spatial patterns; Aves; Mammalia; Vertebrata |
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Aim: Despite their often high-trophic position and their contribution to many ecosystem functions, little is known about the factors affecting assemblage structure of medium- and large-sized neotropical vertebrates. We examined the relative roles played by the physical and biological environment, and by purely spatial processes, in shaping the composition and diversities of these vertebrate assemblages. Then, based on the theory that the Guianan forest cover shrank to isolated pockets during the late Pleistocene–Holocene, we tested if the past forest refugia may have shaped current vertebrate assemblages. Location: French Guiana, Guiana Shield, South America. Methods: Abundances of 19 medium- and large-sized vertebrates were estimated at 21 locations in undisturbed Guianan rain forests. Using taxonomic, functional and phylogenetic metrics, we partitioned the effects of a range of physical and biological environmental conditions and purely spatial predictors in shaping both assemblage composition and (alpha and beta) diversities. Results: We identified a significant, but weak relationship between taxonomic, functional and phylogenetic assemblage composition and environmental conditions. Assemblage diversity patterns were mainly explained by spatial predictors irrespective of the metrics. Current assemblage diversities are correlated with Pleistocene–Holocene forest history, with the highest alpha diversities outside of putative forest refugia, and the highest beta diversities inside these areas. Main conclusions: Current vertebrate assemblage composition is not strongly marked by common environmental factors. Our main conclusion is that assemblage composition results from individual species responses to the environment. Our findings also suggest that dispersal-related processes or more probably historical processes shape (alpha and beta) diversity patterns. In fact, forest fragmentation during Pleistocene–Holocene climate changes could have led to isolated vertebrate assemblages evolving into unique species assemblages creating the current high beta diversity inside refugia, whereas the lower habitat stability outside of refugia could have led to mixed assemblages in areas recolonized by forest vertebrates (current high alpha diversity outside of refugia). |
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IRD, UMR AMAP (Cirad, CNRS, INRA, Université de Montpellier), Montpellier, France |
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Blackwell Publishing Ltd |
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13669516 (Issn) |
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833 |
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Vincent, G.; Weissenbacher, E.; Sabatier, D.; Blanc, L.; Proisy, C.; Couteron, P. |
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Detection des variations de structure de peuplements en foret dense tropicale humide par lidar aeroporte |
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2010 |
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Revue Francaise de Photogrammetrie et de Teledetection |
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Rev. Fr. Photogramm. Teledetect. |
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191 |
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42-51 |
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Above-ground biomass estimation; Canopy height model; Stem diameter distribution; Tropical moist forest; Above ground biomass; Above ground level; Airborne LiDAR; Basal area; Canopy Height Models; Carbon stocks; Characterisation; Classical fields; Coefficient of variation; Diameter distributions; Digital terrain model; Flooded areas; Forest ecology; Forest structure; Forest type; High spatial resolution; Individual tree; LIDAR data; Light detection and ranging; Local statistics; Long term; Management issues; Natural forests; Natural variation; Pearson correlation coefficients; Quadratic mean diameter; Soil characteristics; Soil cover; Spatial changes; Spatial resolution; Stem density; Stem diameter; Stem height; Strong correlation; Tree height; Tropical moist forest; Tropical rain forest; Vegetation structure; Vertical accuracy; Water regime; Discriminant analysis; Ecology; Optical radar; Remote sensing; Soils; Statistics; Stem cells; Temperature control; Tropics; Vegetation; Forestry; Biomass; Discriminant Analysis; Ecology; Forest Canopy; Forestry; Radar; Remote Sensing; Stems; Temperature Control; Tropical Atmospheres |
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Characterisation of forest structure is a major stake for forestry, species conservation, carbon stock estimates and many forest ecology and management issues. At large scale natural forest structure tends to vary according to climate and geomorphomology (Paget, 1999; Steege et al., 2006) while soil characteristics (and notably water regime) and syMgenetic stage add some finer scale variation (Oldeman, 1989; Sabatier et al., 1997). Forest structure characterisation traditionally relies on field-based collection of individual tree dimensions such as stem diameter and stem height sampled across tracks of forest (Hall et al., 1998). However, such field intensive methods are costly, and of low accuracy regarding measures of tree heights. Airborne light detection and ranging (LiDAR) technology provides horizontal and vertical Information at high spatial resolutions and vertical accuracies (Lim et al., 2003; Hyyppä et al., 2004). It has the potential for gathering vegetation structure data over large areas rapidly at moderate cost and hence is of particular relevance for poorly sampled, difficult to access and largely unexplored tropical rainforests. In this study we examined the ability of airborne LiDAR to detect spatial changes in the structure of dense tropical rain forest and we probed this remote sensing approach against local statistics derived from stem diameters (i.e. classical field data information) mapped across a large track of forest at a long term experimental site in French Guyana. The large variability in forest structure occurring at the experimental site is du to natural variation of the soil cover (and notably drainage properties) combined with various logging intensities applied 15 years before the LiDAR data were acquired. On this basis ten different forest types were identified at the site (figure 1 and 3). Various stem based statistics were computed for a series of meshes with cells ranging from 30 by 30 m plots to 250 by 250 m plots. These statistics included basal area, stem density, quadratic mean diameter, and diameter distribution percentiles. Similarly local statistics were extracted either from the Canopy Height Model (e.g. median height, mean height, standard height deviation, height coefficient of variation, height percentiles, frequency of hits below 5 m above ground level). Additionally a wetness index (Böhner et al., 2002) was computed at each node of a 5 by 5 m grid from the Digital Terrain Model also extracted from the LiDAR data set. We used both types of cell statistics to discriminate the various forest types. Comparison between the two approaches for a range of spatial resolution is available from in table 1. Results indicate that LiDAR based statistics are essentially as powerful as field based statistics to discriminate forest types at coarse scale. This reflects the very strong correlation between the CHM and the field based stem diameter data. For example (figure 5) the Pearson correlation coefficient between median height and quadratic mean diameter for cells of 125 by 125 m is 0.945 (n=0.72). When a finer resolution is required however as for the detection of seasonally flooded bottomland forest along thalwegs, then LiDAR technology proves more efficient than field based inventories as it combines information from the DTM and the CHM. The wetness index alone correctly retrieves about 2 thirds of the seasonally flooded areas. All in all, discriminant analysis performance of the LiDAR derived information approaches 80% when classifying forests cover at the finest scale of 5 by 5m into 10 different types and reaches 87% when a coarser classification Into 6 forest types is considered (figure 4). |
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IRD, UMR AMAP, Montpellier, France |
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Cited By (since 1996): 1; Export Date: 21 October 2011; Source: Scopus; Language of Original Document: French; Correspondence Address: Vincent, G.; IRD, UMR AMAP, Kourou – BP 701 (CIRAD) 97387 Kourou cedex -Guyane, France |
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Hibert, F.; Taberlet, P.; Chave, J.; Scotti-Saintagne, C.; Sabatier, D.; Richard-Hansen, C. |
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Unveiling the Diet of Elusive Rainforest Herbivores in Next Generation Sequencing Era? The Tapir as a Case Study |
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2013 |
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PLoS ONE |
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PLoS ONE |
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8 |
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4 |
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e60799 |
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Characterizing the trophic relationships between large herbivores and the outstanding plant diversity in rainforest is a major challenge because of their elusiveness. This is crucial to understand the role of these herbivores in the functioning of the rainforest ecosystems. We tested a non-invasive approach based on the high-throughput sequencing of environmental samples using small plant plastid sequences (the trnL P6 loop) and ribosomal ITS1 primers, referred to as DNA metabarcoding, to investigate the diet of the largest neotropical herbivore, the lowland tapir. Sequencing was performed on plant DNA extracted from tapir faeces collected at the Nouragues station, a protected area of French Guiana. In spite of a limited sampling, our approach reliably provided information about the lowland tapir's diet at this site. Indeed, 95.1% and 74.4% of the plant families and genera identified thanks to the trnL P6 loop, respectively, matched with taxa already known to be consumed by tapirs. With this approach we were able to show that two families and eight new genera are also consumed by the lowland tapir. The taxonomic resolution of this method is limited to the plant family and genera. Complementary barcodes, such as a small portion of ITS1, can be used to efficiently narrow identifications down to the species in some problematic families. We will discuss the remaining limitations of this approach and how useful it is at this stage to unravel the diet of elusive rainforest herbivores and better understand their role as engineers of the ecosystem. © 2013 Hibert et al. |
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IRD, UMR AMAP, Montpellier, France |
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Export Date: 16 April 2013; Source: Scopus; Art. No.: e60799; :doi 10.1371/journal.pone.0060799; Language of Original Document: English; Correspondence Address: Hibert, F.; Direction Etudes et Recherches, Office National de la Chasse et de la Faune Sauvage, Kourou, French Guiana; email: fabricenz@gmail.com |
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481 |
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Laurans, M.; Herault, B.; Vieilledent, G.; Vincent, G. |
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Vertical stratification reduces competition for light in dense tropical forests |
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2014 |
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Forest Ecology and Management |
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For. Ecol. Manage. |
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329 |
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79-88 |
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Adult stature; French Guiana; Hierarchical bayesian model; Local crowding; Niche partitioning; Bayesian networks; Growth rate; Adult stature; French Guiana; Hierarchical Bayesian modeling; Local crowding; Niche partitioning; Reforestation |
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Differential growth response to light level is widely accepted as a potential mechanism for maintaining tree species richness in tropical forests. The position of tree species in the hierarchy of the canopy is considered an important indicator of species light capture and growth strategy. Paradoxically, the relative importance of species identity and competition for light in determining individual tree growth is poorly documented at the adult stage. In this study, we used a hierarchical Bayesian model to quantify the overall importance of species identity, light and belowground competition as determinants of tree growth in French Guiana tropical forest. Light competitive status is assessed by a crown exposure score and below ground competition is estimated from local crowding. We examined species sensitivity to both types of competition in relation to adult stature. Our results are based on annual diameter increments of more than 13,510 stems from 282 species monitored over 10years. Mean annual growth rate was 0.11cmy-1 with species identity explaining 35% of the individual variation in growth rate. Crown exposure and local crowding explained 3.5% and 2.4% of the variation in growth rate, respectively. Predicted changes in growth rate as crown exposure (resp. local crowding) index changed from lower to upper interquartile level was 0.03cmy-1 (resp. 0.02cmy-1). Species sensitivity to crown exposure and to local crowding were positively correlated (i) with predicted growth rate at high-light standardized conditions and (ii) with adult stature.This vertical niche partitioning is invoked to explain the limited contribution made by level of light competition for predicting individual tropical tree growth as the community-level response is dominated by the abundance of small-statured species with low sensitivity to light level.Light appears to drive the stem growth rate of tropical trees through species differentiation more than through individual tree growth limitation. This vertical stratification complements the previously reported regeneration niche and together these provide evidence for light niche partitioning in the three-dimensional space of tropical forests. © 2014 Elsevier B.V. |
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IRD, UMR AMAP, TA A-51/PS1, Bd de la Lironde, 34398 Montpellier Cedex 5, France |
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Elsevier |
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Export Date: 30 July 2014; Coden: Fecmd; Correspondence Address: Laurans, M.; CIRAD, UMR AMAP, TA A-51/PS1, Bd de la Lironde, 34398 Montpellier Cedex 5, France; email: laurans@cirad.fr |
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Mony, R.; Dejean, A.; Bilong, C.F.B.; Kenne, M.; Rouland-Lefèvre, C. |
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Melissotarsus ants are likely able to digest plant polysaccharides |
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2013 |
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Comptes Rendus – Biologies |
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C. R. Biol. |
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336 |
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10 |
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500-504 |
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Ant-plant interactions; Degradation of plant material; Enzymatic activity; Melissotarsus ants |
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Melissotarsus ants have an extremely specialized set of behaviours. Both workers and gynes tunnel galleries in their host tree bark. Workers walk with their mesothoracic legs pointing upwards and tend Diaspididae hemiptera for their flesh. The ants use their forelegs to plug the galleries with silk that they secrete themselves. We hypothesised that the ants' energetic needs for nearly constant gallery digging could be satisfied through the absorption of host tree tissues; so, using basic techniques, we examined the digestive capacities of workers from two species. We show that workers are able to degrade oligosaccharides and heterosides as well as, to a lesser degree, polysaccharides. This is one of the rare reports on ants able to digest plant polysaccharides other than starch. © 2013 Académie des sciences. |
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IRD, UMR BIOEMCO-IBIOS, 32, rue Henri-Varagnat, 93143 Bondy cedex, France |
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Export Date: 6 December 2013; Source: Scopus; Coden: Crboc; doi: 10.1016/j.crvi.2013.08.003; Language of Original Document: English; Correspondence Address: Dejean, A.; Université de Toulouse, UPS, Ecolab, 118, route de Narbonne, 31062 Toulouse, France; email: alain.dejean@wanadoo.fr; References: Hölldobler, B., Wilson, E.O., (1990) The Ants, , Harvard University Press Cambridge, MA, USA 730 p; Duchesne, L.C., Larson, D.W., Cellulose and the evolution of plant life (1989) BioScience, 39, pp. 238-241; Watanabe, H., Tokuda, G., Cellulolytic Systems in Insects (2010) Annu. Rev. Entomol., 55, pp. 609-632; Wenzel, M., Schonig, I., Berchtold, M., Kampfer, P., König, K., Aerobic and facultatively anaerobic cellulolytic bacteria from the gut of the Termite Zootermopsis angusticollis (2002) J. Appl. Microbiol., 92, pp. 32-40; Brune, A., Microbial symbioses in the digestive tract of lower termites (2011) Beneficial Microorganisms in Multicellular Life Forms, pp. 3-25. , E. Rosenberg, U. Gophna, Heidelberg Springer; Tokuda, G., Watanabe, H., Hidden cellulases in termites: Revision of an old hypothesis (2007) Biol. Lett., 3, pp. 336-339; Nobre, T., Aanen, D.K., Fungiculture or termite husbandry? The ruminant hypothesis (2012) Insects, 3, pp. 307-323; Zientz, E., Feldhaar, H., Stoll, S., Gross, R., Insights into the microbial world associated with ants (2005) Arch. Microbiol., 184, pp. 199-206; Aylward, F., Burnum, K.E., Scott, J.J., Suen, G., Tringe, S.G., Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens (2012) ISME J., pp. 1-14; Cook, S.C., Davidson, D.W., Nutritional and functional biology of exudate-feeding ants (2006) Entomol. Exp. Appl., 118, pp. 1-10; He, H., Chen, Y., Zhang, Y., Wei, C., Bacteria associated with gut lumen of Camponotus japonicus Mayr (2011) Environ. Entomol., 40, pp. 1405-1409; Blochmann, F., Über das Vorkommen von bakterienähnlichen Gebilden in den Geweben und Eiern verschiedener Insekten (1892) Zentbl. Bakteriol., 11, pp. 234-240; Feldhaar, H., Straka, J., Krischke, M., Berthold, K., Stoll, S., Nutritional upgrading for omnivorous carpenter ants by the endosymbiont Blochmannia (2007) BMC Biol., 5, p. 48; De Souza, D.J., Bézier, A., Depoix, D., Drezen, J.M., Lenoir, A., Blochmannia endosymbionts improve colony growth and immune defence in the ant Camponotus fellah (2009) BMC Microbiol., 9, p. 29; Van Borm, S., Buschinger, A., Boomsma, J.J., Billen, J., Tetraponera ants have gut symbionts related to nitrogen-fixing root-nodule bacteria (2002) Proc. R. Soc. Lond. B., 269, pp. 2023-2027; Eilmus, S., Heil, M., Bacterial associates of arboreal ants and their putative functions in an obligate ant-plant mutualism (2009) Appl. Env. Microbiol., 75, pp. 4324-4332; Russell, J.A., Moreau, C.S., Goldman-Huertas, B., Fujiwara, M., Lohman, D.J., Pierce, N.E., Bacterial gut symbionts are tightly linked with the evolution of herbivory in ants (2009) Proc. Natl. Acad. Sci. USA, 106, pp. 21236-21241; Delage-Darchen, B., Une fourmi de Côte d'Ivoire: Melissotarsus titubans Del., N. Sp. (1972) Insect. Soc., 19, pp. 213-226; Prins, A.J., Ben-Dov, Y., Rust, D.J., A new observation on the association between ants (Hymenoptera: Formicidae) and armoured scale insects (Homoptera: Diaspididae) (1975) J. Entomol. Soc. S. Afr., 38, pp. 211-216; Mony, R., Kenne, M., Dejean, A., (2002) Biology and Ecology of Pest Ants of the Genus Melissotarsus (Formicidae: Myrmicinae), with Special Reference to Tropical Fruit Tree Attacks, Sociobiology, 40, pp. 645-654; Mony, R., Fisher, B.L., Kenne, M., Tindo, M., Dejean, A., Behavioural ecology of bark-digging ants of the genus Melissotarsus (2007) Funct. Ecosyst. Commun., 1, pp. 121-128; Fisher, B.L., Robertson, H.G., Silk production by adult workers of the ant Melissotarsus emeryi (Hymenoptera, Formicidae) in South African fynbos (1999) Insect. Soc., 46, pp. 78-83; Sanson, G., The biomechanics of browsing and grazing (2006) Am. J. Bot., 93, pp. 1531-1545; Clissold, F., Sanson, G.D., Read, J., The paradoxical effects nutrient ratios and supply rates on an outbreaking insect herbivore, the Australian plague locust (2006) J. Anim. Ecol., 75, pp. 1000-1013; Cannon, C.A., (1998) Nutritional Ecology of the Carpenter Ant Camponotus Pennsylvanicus (De Geer): Macronutrient Preference and Particle Consumption, , (PhD thesis) Blacsburg VA; Eisner, T., A comparative morphological study of the proventriculus of ants (Hymenoptera, Formicidae) (1957) Bull. Mus. Comp. Zool., 116, pp. 441-490; Caetano, F.H., Can we use the digestive tract for phyllogenetic studies in ants (1990) Social Insects and the Environment, pp. 321-322. , G.K. Veeresh, B. Mallik, C.A. Viraktamath, Oxford & IBH publishing co. New Dehli; Delage, B., Recherches sur l'alimentation des fourmis granivores Messor capitatus Latr (1962) Insect. Soc., 9, pp. 137-143; Oettler, J., Johnson, R.A., The old ladies of the seed harvester ant Pogonomyrmex rugosus: Foraging performed by two groups of workers (2009) J. Insect. Behav., 22, pp. 217-226; Abbott, A., Nutrient dynamic of ants (1977) Production Ecology of Ants and Termites, pp. 233-244. , M.V. Brian, Cambridge University Press Cambridge; D'Ettorre, P., Mora, P., Dibangou, V., Rouland, C., Errard, C., The role of symbiotic fungus in the digestive metabolism of two species of fungus-growing ants (2002) J. Comp. Physiol. B, 172, pp. 169-176; Rouland, C., Lenoir, F., Lepage, M., The role of the symbiotic fungus in the digestive metabolism of several species of fungus-growing termites (1991) Comp. Biochem. Physiol., 99 A, pp. 657-663; Williams, J., Villaroya, H., Petek Galactosidase, F., II, III and IV from seeds of Trifolium repens (1978) Biochem. J., 175, pp. 1069-1077; Werner, W., Rey, H.G., Wielinger, R.H., Properties of a new chromogen for determination of glucose in blood according to the COD/POD method (1970) Anal. Chem., 252, pp. 224-228; Mora, P., Rouland, C., Comparison of hydrolytic enzyme produced during growth on carboidrate substrated by Termitomyces associates of Pseudacanthotermes spiniger and Microtermes subhyalinus (isopteran: Termitidae) (1994) Sociobiology, 26, pp. 39-53; Koning, R.E., Secondary Growth. Plant Physiology Information, , http://plantphys.info/plant_biology/secondary.shtml; Scheffrahn, R.H., Termites (Isoptera) (2008) Encyclopedia of Entomology Part 20, pp. 3737-3747. , J.L. Capinera, Springer Berlin; Richard, F.J., Mora, P., Errard, C., Rouland, C., Digestive capacities of leaf-cutting ants and the contribution of their cultivar to the degradation of plant material (2005) J. Comp. Physiol. B, 175, pp. 297-303; Ayre, G.L., The relationships between food and digestive enzymes in five species of ants (Hymenoptera: Formicidae) (1967) Can. Entomol., 99, pp. 408-411; Went, F.W., Wheeler, J., Wheeler, G.C., Feeding and digestion in some ants (Veromessor and Manica) (1972) BioScience, 22, pp. 82-88; Moller, I.E., De Fine Licht, H.H., Harholt, J., Willats, G.T., Boomsma, J.J., The dynamics of plant cell-wall polysaccharide decomposition in leaf-cutting ant fungus garden (2011) PloS ONE, 6, p. 17506 |
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Hamon, P.; Duroy, P.-O.; Dubreuil-Tranchant, C.; Mafra D'Almeida Costa, P.; Duret, C.; Razafinarivo, N.J.; Couturon, E.; Hamon, S.; De Kochko, A.; Poncet, V.; Guyot, R. |
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Two novel Ty1-copia retrotransposons isolated from coffee trees can effectively reveal evolutionary relationships in the Coffea genus (Rubiaceae) |
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Journal Article |
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2011 |
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Molecular Genetics and Genomics |
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Mol. Genet. Genomics |
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285 |
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6 |
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447-460 |
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Coffea; Evolution; Genetic diversity; LTR-retrotransposons; article; coffee; controlled study; Divo; gene amplification; gene dosage; gene expression; gene insertion; gene locus; gene sequence; genetic identification; genetic polymorphism; genetic variability; molecular cloning; Nana; nonhuman; nucleotide sequence; phylogeny; plant evolution; plant gene; priority journal; Psilanthus; random amplified microsatellite; retroposon; Rubiaceae; species differentiation; tree; Ty1 copia gene; Coffea; Genes, Plant; Genome, Plant; Phylogeny; Retroelements |
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In the study, we developed new markers for phylogenetic relationships and intraspecies differentiation in Coffea. Nana and Divo, two novel Ty1-copia LTR-retrotransposon families, were isolated through C. canephora BAC clone sequencing. Nana- and Divo-based markers were used to test their: (1) ability to resolve recent phylogenetic relationships; (2) efficiency in detecting intra-species differentiation. Sequence-specific amplification polymorphism (SSAP), retrotransposon-microsatellite amplified polymorphism (REMAP) and retrotransposon-based insertion polymorphism (RBIP) approaches were applied to 182 accessions (31 Coffea species and one Psilanthus accession). Nana- and Divo-based markers revealed contrasted transpositional histories. At the BAC clone locus, RBIP results on C. canephora demonstrated that Nana insertion took place prior to C. canephora differentiation, while Divo insertion occurred after differentiation. Combined SSAP and REMAP data showed that Nana could resolve Coffea lineages, while Divo was efficient at a lower taxonomic level. The combined results indicated that the retrotransposon-based markers were useful in highlighting Coffea genetic diversity and the chronological pattern of speciation/differentiation events. Ongoing complete sequencing of the C. canephora genome will soon enable exhaustive identification of LTR-RTN families, as well as more precise in-depth analyses on contributions to genome size variation and Coffea evolution. © 2011 Springer-Verlag. |
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IRD, UMR DIADE, BP 50172, Sainte Clotilde Cedex, La Réunion 97492, France |
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Export Date: 21 October 2011; Source: Scopus; Coden: Mggoa; doi: 10.1007/s00438-011-0617-0; PubMed ID: 21505885; Language of Original Document: English; Correspondence Address: Hamon, P.; IRD, UMR DIADE, BP 64501, Montpellier Cedex 5, France; email: perla.hamon@ird.fr; Molecular Sequence Numbers: GENBANK: DV666936, HM755952, HM755953;; Chemicals/CAS: Retroelements |
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