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Öpik, M., Zobel, M., Cantero, J. J., Davison, J., Facelli, J. M., Hiiesalu, I., et al. (2013). Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi. Mycorrhiza, 23(5), 411–430.
Abstract: We aimed to enhance understanding of the molecular diversity of arbuscular mycorrhizal fungi (AMF) by building a new global dataset targeting previously unstudied geographical areas. In total, we sampled 96 plant species from 25 sites that encompassed all continents except Antarctica. AMF in plant roots were detected by sequencing the nuclear SSU rRNA gene fragment using either cloning followed by Sanger sequencing or 454-sequencing. A total of 204 AMF phylogroups (virtual taxa, VT) were recorded, increasing the described number of Glomeromycota VT from 308 to 341 globally. Novel VT were detected from 21 sites; three novel but nevertheless widespread VT (Glomus spp. MO-G52, MO-G53, MO-G57) were recorded from six continents. The largest increases in regional VT number were recorded in previously little-studied Oceania and in the boreal and polar climatic zones – this study providing the first molecular data from the latter. Ordination revealed differences in AM fungal communities between different continents and climatic zones, suggesting that both biogeographic history and environmental conditions underlie the global variation of those communities. Our results show that a considerable proportion of Glomeromycota diversity has been recorded in many regions, though further large increases in richness can be expected in remaining unstudied areas. © 2013 Springer-Verlag Berlin Heidelberg.
Keywords: 454-sequencing; Biogeography; Database; Diversity; Fungal macroecology; Glomeromycota
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Bandou, E., Lebailly, F., Muller, F., Dulormne, M., Toribio, A., Chabrol, J., et al. (2006). The ectomycorrhizal fungus Scleroderma bermudense alleviates salt stress in seagrape (Coccoloba uvifera L.) seedlings. Mycorrhiza, 16(8), 559–565.
Abstract: The purpose of this study was to test the capacity of the ectomycorrhizal (ECM) fungus, Scleroderma bermudense, to alleviate saline stress in seagrape (Coccoloba uvifera L.) seedlings. Plants were grown over a range (0, 200, 350 and 500 mM) of NaCl levels for 12 weeks, after 4 weeks of non-saline pre-treatment under greenhouse conditions. Growth and mineral nutrition of the seagrape seedlings were stimulated by S. bermudense regardless of salt stress. Although ECM colonization was reduced with increasing NaCl levels, ECM dependency of seagrape seedlings increased. Tissues of ECM plants had significantly increased concentrations of P and K but lower Na and Cl concentrations than those of non-ECM plants. Higher K concentrations in the leaves of ECM plants suggested a higher osmoregulating capacity of these plants. Moreover, the water status of ECM plants was improved despite their higher evaporative leaf surface. The results suggest that the reduction in Na and Cl uptake together with a concomitant increase in P and K absorption and a higher water status in ECM plants may be important salt-alleviating mechanisms for seagrape seedlings growing in saline soils.
Keywords: Coccoloba uvifera; ectomycorrhizal dependency; mineral uptake; salt stress; water status
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Barabe, D., Cuerrier, A., & Quilichini, A. (2012). Botanical gardens: Between science and commercialization. Natures Sciences Societes, 20(3), 334–342.
Abstract: Les jardins botaniques: Entre science et commercialisation.
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Barabe, D., Lacroix, C., & Gibernau, M. (2012). Developmental floral morphology of Syngonium in the context of the tribe Caladieae (Araceae). Willdenowia – Annals of the Botanic Garden and Botanical Museum Berlin-Dahlem, 42(2), 297–305.
Abstract: The floral development of Syngonium angustatum is analysed in the context of a recently published molecular phylogeny of the Araceae. The initiation of discoid floral primordia occurs acropetally on the surface of the inflorescence. Female flowers, atypical bisexual flowers, sterile male flowers and male flowers are inserted on the same phyllotactic spirals on the spadix. Stamen primordia are initiated simultaneously on the periphery of more or less circular floral primordia. There are four stamens per flower (rarely three). In a synandrium, the fusion of stamens occurs very early during their developmental cycle. In some flowers one or two stamens remain free. The staminodes are also initiated on the periphery of the discoid floral primordium and their number varies from four to six. The growth of the fused staminodes will eventually form a longitudinal cavity in the centre of the mature synandrode. On the synandrodes located near the female zone, one or two staminodes remain free during development. No atypical bisexual flowers were observed on the inflorescence of Syngonium. The presence of a few calcium oxalate crystals was observed on the surface of all types of flowers. All the atypical flowers located at the base of the sterile zone corresponded to sterile male flowers and resulted from a more or less random disorganisation of the typical structure of a synandrode. In the Aroideae, free stamens or staminodes represent a plesiomorphic condition. The association of synandria and synandrodes is present in all early diverging genera of the tribe Caladieae and could represent the ancestral state. It is not clear if free stamens have evolved once or twice in the tribe Caladieae, both scenarios are possible.
Keywords: Aroids; Inflorescence; Phylogeny; Oxalate Crystals; Flower
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Barabe, D., Lacroix, C., & Gibernau, M. (2011). Floral development of Urospatha: merosity and phylogeny in the Lasioideae (Araceae). Plant Syst. Evol., 296(1-2), 41–50.
Abstract: In this paper we study merosity in the genus Urospatha within the framework of a resolved phylogeny of the Araceae. We analyse how a transition from dimerous or tetramerous merosity to pentamerous or hexamerous merosity can occur developmentally in the Lasioideae. In Urospatha, initiation of floral primordia along the inflorescence is acropetal, while development of flowers is basipetal. This indicates the presence of two distinct phases in the development of the Urospatha inflorescence. The first phase corresponds to initiation of flowers and establishment of the phyllotactic pattern, and the second phase to differentiation of floral organs. Urospatha is characterized by the presence of trimerous, tetramerous, pentamerous and rarely hexamerous flowers. In all types of flowers, the stamens are closely associated and opposite to the tepals. Pentamerous flowers are formed by addition of a sector comprising a stamen and tepal. Likewise, in the case of hexamerous flowers, two sectors are added. In the Lasioideae, the increase in the number of tepals and stamens is linked with two developmental processes that have appeared independently in the subfamily: (1) addition of one or two stamen-petal sectors (Anaphyllopsis and Urospatha), and (2) independent increase in the number of tepals and stamens on whorls, more or less organized and inserted in alternate position (Dracontium). Tetramerous whorls as they occur in basal Lasioideae would be homologous to two dimerous whorls from an evolutionary point of view.
Keywords: Inflorescence; Homeosis; Angiosperms; Systematic; Morphogenetic constraints
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Baraloto, C., Alverga, P., Quispe, S. B., Barnes, G., Chura, N. B., Da Silva, I. B., et al. (2014). Trade-offs among forest value components in community forests of southwestern Amazonia. Ecology and Society, 19(4), 56.
Abstract: Contemporary conservation interventions must balance potential trade-offs between multiple ecosystem services. In tropical forests, much attention has focused on the extent to which carbon-based conservation provided by REDD+ policies can also mitigate biodiversity conservation. In the nearly one-third of tropical forests that are community owned or managed, conservation strategies must also balance the multiple uses of forest products that support local livelihoods. Although much discussion has focused on policy options, little empirical evidence exists to evaluate the potential for trade-offs among different tropical forest value components. We assessed multiple components of forest value, including tree diversity, carbon stocks, and both timber and nontimber forest product resources, in forest communities across the trinational frontier of Brazil, Peru, and Bolivia. We installed 69 0.5-ha vegetation plots in local communities, and we characterized 15 components of forest value for each plot. Principal components analyses revealed two major axes of forest value, the first of which defined a trade-off between diversity of woody plant communities (taxonomic and functional) versus aboveground biomass and standing timber volume. The second axis described abundance of commercial species, with strong positive loadings for density of timber and nontimber forest products, including Brazil nut (Bertholletia excelsa) and copaiba oil (Copaifera spp.). The observed trade-off between different components of forest value suggests a potential for management conflicts prioritizing biodiversity conservation versus carbon stocks in the region. We discuss the potential for integrative indices of forest value for tropical forest conservation.
Keywords: Açai; Biodiversity conservation; Brazil nut; Carbon stocks; Livelihood; Ntfp; Redd; Rubber; Timber; Tropical rainforest
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Baraloto, C., Alverga, P., Quispe, S. B., Barnes, G., Chura, N. B., da Silva, I. B., et al. (2015). Effects of road infrastructure on forest value across a tri-national Amazonian frontier. Biological Conservation, 191, 674–681.
Abstract: Road construction demonstrably accelerates deforestation rates in tropical forests, but its consequences for forest degradation remain less clear. We estimated a series of forest value metrics including components of biodiversity, carbon stocks, and timber and non-timber forest product resources, along the recently paved Inter-Oceanic Highway (IOH) integrating Brazil and Peru along the Bolivian border. We installed 69 vegetation plots in intact terra firme forests representative of local community holdings near and far from the IOH, and we characterized 15 components of forest value for each plot.We observed strong geographic gradients in forest value components across the region, with increases from west to east in aboveground biomass and in the abundance of timber and non-timber forest product trees and regeneration. Plots in communities in Pando, Bolivia, where the IOH remains in part unpaved, had the highest aboveground biomass, standing timber volumes and Brazil nut tree density. In contrast, communities in Madre de Dios, Peru, where settlements and unpaved portions of the IOH have existed for decades, and in Acre, Brazil, where paving of the IOH has been underway for more than a decade, were more degraded. Seven of the fifteen forest value components we measured increased with increasing distance from the IOH, although the magnitude of these effects was weak. Landscape scale remote sensing analyses showed much stronger effects of road proximity on deforestation. We suggest that remote sensing techniques including canopy spectral signatures might be calibrated to characterize multiple components of forest value, so that we can estimate landscape scale impacts of infrastructure developments on both deforestation and forest degradation in tropical regions. © 2015 Elsevier B.V.
Keywords: Açai; Biodiversity; Brazil nut; Carbon stocks; Connectivity; Infrastructure; Livelihood; Ntfp; Redd; Road impact; Rubber; Timber; Tropical rainforest
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Baraloto, C., Bonal, D., & Goldberg, D. E. (2006). Differential seedling growth response to soil resource availability among nine neotropical tree species. J. Trop. Ecol., 22, 487–497.
Abstract: Although the potential contribution to tropical tree species coexistence of niche differentiation along light gradients has received much attention, the degree to which species perform differentially along soil resource gradients remains unclear. To examine differential growth response to soil resources, we grew seedlings of nine tropical tree species at 6.0% of full sun for 12 mo in a factorial design of two soil types (clay and white sand), two phosphate fertilization treatments (control and addition of 100 mg P kg(-1)) and two watering treatments (field capacity and water limitation to one-third field capacity). Species differed markedly in biomass growth rate, but this hierarchy was almost completely conserved across all eight treatments. All species grew more slowly in sand than clay soils. and no species grew faster with phosphate additions. Only Eperua grandiflora and E. falcata showed significant growth increases in the absence of water limitation. Faster-growing species were characterized by high specific leaf area, high leaf allocation and high net assimilation rate but not lower root allocation. Slower-growing species exhibited greater plasticity in net assimilation rate. suggesting that tolerance of edaphic stress in these species is related more to stomatal control than to whole-plant carbon allocation. Although relative growth rate for biomass was correlated with both its physiological and morphological components. interspecific differences were best explained by differences in net assimilation rate across six of the eight treatments. A suite of traits including high assimilation and high specific leaf area maintains rapid growth rate of faster-growing species across a wide gradient of soil resources, but the lack of plasticity they exhibit may compromise their survival in the poorest soil environments.
Keywords: biomass allocation; Dicorynia; drought stress; Eperua; French Guiana; Goupia; Jacaranda; plasticity; Qualea; Recordorylon; relative growth rate; Sextonia; soil phosphorus; specific leaf area; Virola
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Baraloto, C., & Couteron, P. (2010). Fine-scale Microhabitat Heterogeneity in a French Guianan Forest. Biotropica, 42(4), 420–428.
Abstract: We examined fine-scale heterogeneity of environmental conditions in a primary rain forest in French Guiana to describe variation in microhabitats that plants may experience during establishment. We characterized both the range as well as the spatial structuring of 11 environmental factors important for seedling establishment in six hexagonal sampling grids, one each in gap and understory sites at three points representing the predominant geomorphic units in this primary forest. Each grid contained 37 sampling points separated by 31 cm-20 m. Monte-Carlo tests of semivariograms against complete spatial randomness indicated that for many variables in all six sampling grids, spatial dependence did not exceed 1 m. A principal component analysis of all sampling points revealed a lack of spatial microhabitat structure, rather than homogeneous patches associated with canopy structure or geomorphology. Our results suggest that ample fine-scale spatial heterogeneity exists to support the coexistence of plant species with differential abiotic requirements for regeneration.
Keywords: canopy gap; geostatistics; light availability; microclimate; soil moisture; soil nutrients; topography
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Baraloto, C., Ferreira, E., Rockwell, C., & Walthier, F. (2007). Limitations and Applications of Parataxonomy for Community Forest Management in Southwestern Amazonia. Ethnobotany Research & Applications, 5, 77–84.
Abstract: We examined the limitations of parataxonomic inventories for developing management plans for woody plant resources in tropical rain forests of southwestern Amazonia. Using compilations of herbarium labels, forest personnel interviews and published species descriptions, we assessed the accuracy of common names as parataxonomic units (PUs). We identified 384 common names for 310 harvested woody plant species in the Brazilian state of Acre, of which only 50% were unique to a single taxonomic species. About 10% of common names referred to more than one species, more than half of which included multiple genera. For the 106 species from the Acre sample common to the MAP region including Madre de Dios, Peru and Pando, Bolivia, we identified 198 common names. Splitting was much more frequent in this sample, with more than 80% of species having more than one common name. When the Acre sample was expanded to 131 species from the Brazilian Amazon region, including the states of Amazonas and Para, we identified 740 common names, with nearly 90% of species being represented by more than one common name. Errors and inaccuracy of parataxonomy may contribute to market instability if product orders can not be homogenized within regional markets, and to unsustainable harvests if species are mistakenly lumped into single parataxonomic units. We discuss several programs currently being implemented by our collaborative team in the region to address this issue, including field guides based on digital photography, field courses, and workshops featuring discussions between regional inventory personnel and botanists.
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