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Leroy, C.; Maes, A.Q.; Louisanna, E.; Séjalon-Delmas, N. |
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Title |
How significant are endophytic fungi in bromeliad seeds and seedlings? Effects on germination, survival and performance of two epiphytic plant species |
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Journal Article |
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Year |
2019 |
Publication |
Fungal Ecology |
Abbreviated Journal |
Fungal Ecol. |
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39 |
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296-306 |
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Aechmea; Bromeliads; Endophytic fungi; Fusarium spp.; Germination; Survival; Trichoderma spp.; Vertical transmission |
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In bromeliads, nothing is known about the associations fungi form with seeds and seedling roots. We investigated whether fungal associations occur in the seeds and seedling roots of two epiphytic Aechmea species, and we explored whether substrate and fungal associations contribute to seed germination, and seedling survival and performance after the first month of growth. We found a total of 21 genera and 77 species of endophytic fungi in the seeds and seedlings for both Aechmea species by Illumina MiSeq sequencing. The fungal associations in seeds were found in the majority of corresponding seedlings, suggesting that fungi are transmitted vertically. Substrate quality modulated the germination and growth of seedlings, and beneficial endophytic fungi were not particularly crucial for germination but contributed positively to survival and growth. Overall, this study provides the first evidence of an endophytic fungal community in both the seeds and seedlings of two epiphytic bromeliads species that subsequently benefit plant growth. © 2019 Elsevier Ltd and British Mycological Society |
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INRA, UMR Ecologie des Forêts de Guyane (AgroParisTech, CIRAD, CNRS, INRA, Université de Guyane, Université des Antilles), Campus Agronomique, BP 316, Kourou cedex, F-97379, France |
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Elsevier Ltd |
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17545048 (Issn) |
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EcoFoG @ webmaster @ |
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867 |
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Bréchet, L.; Courtois, E.A.; Saint-Germain, T.; Janssens, I.A.; Asensio, D.; Ramirez-Rojas, I.; Soong, J.L.; Van Langenhove, L.; Verbruggen, E.; Stahl, C. |
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Title |
Disentangling Drought and Nutrient Effects on Soil Carbon Dioxide and Methane Fluxes in a Tropical Forest |
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Journal Article |
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Year |
2019 |
Publication |
Frontiers in Environmental Science |
Abbreviated Journal |
Front. Environ. Sci. |
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Volume |
7 |
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180 |
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carbon dioxide; drought; fertilization; methane; nitrogen; phosphorus; soil GHG fluxes; tropical forest |
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Tropical soils are a major contributor to the balance of greenhouse gas (GHG) fluxes in the atmosphere. Models of tropical GHG fluxes predict that both the frequency of drought events and changes in atmospheric deposition of nitrogen (N) will significantly affect dynamics of soil carbon dioxide (CO2) and methane (CH4) production and consumption. In this study, we examined the combined effect of a reduction in precipitation and an increase in nutrient availability on soil CO2 and CH4 fluxes in a primary French Guiana tropical forest. Drought conditions were simulated by intercepting precipitation falling through the forest canopy with tarpaulin roofs. Nutrient availability was manipulated through application of granular N and/or phosphorus (P) fertilizer to the soil. Soil water content (SWC) below the roofs decreased rapidly and stayed at continuously low values until roof removal, which as a consequence roughly doubled the duration of the dry season. After roof removal, SWC slowly increased but remained lower than in the control soils even after 2.5 months of wet-season precipitation. We showed that drought-imposed reduction in SWC decreased the CO2 emissions (i.e., CO2 efflux), but strongly increased the CH4 emissions. N, P, and N × P (i.e., NP) additions all significantly increased CO2 emission but had no effect on CH4 fluxes. In treatments where both fertilization and drought were applied, the positive effect of N, P, and NP fertilization on CO2 efflux was reduced. After roof removal, soil CO2 efflux was more resilient in the control plots than in the fertilized plots while there was only a modest effect of roof removal on soil CH4 fluxes. Our results suggest that a combined increase in drought and nutrient availability in soil can locally increase the emissions of both CO2 and CH4 from tropical soils, for a long term. |
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Lawrence Berkeley National Laboratory, Climate and Ecosystem Science Division, Berkeley, CA, United States |
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Frontiers Media S.A. |
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2296665x (Issn) |
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Export Date: 16 December 2019; Correspondence Address: Bréchet, L.; Centre of Excellence PLECO (Plant and Ecosystems), Department of Biology, University of AntwerpBelgium; email: laeti.brechet@gmail.com |
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EcoFoG @ webmaster @ |
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899 |
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Piponiot, C.; Rödig, E.; Putz, F.E.; Rutishauser, E.; Sist, P.; Ascarrunz, N.; Blanc, L.; Derroire, G.; Descroix, L.; Guedes, M.C.; Coronado, E.H.; Huth, A.; Kanashiro, M.; Licona, J.C.; Mazzei, L.; d’Oliveira, M.V.N.; Peña-Claros, M.; Rodney, K.; Shenkin, A.; de Souza, C.R.; Vidal, E.; West, T.A.P.; Wortel, V.; Herault, B. |
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Title |
Can timber provision from Amazonian production forests be sustainable? |
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Journal Article |
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Year |
2019 |
Publication |
Environmental Research Letters |
Abbreviated Journal |
Environmental Research Letters |
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14 |
Issue |
6 |
Pages |
064014 |
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Abstract |
Around 30 Mm3 of sawlogs are extracted annually by selective logging of natural production forests in Amazonia, Earth’s most extensive tropical forest. Decisions concerning the management of these production forests will be of major importance for Amazonian forests’ fate. To date, no regional assessment of selective logging sustainability supports decision-making. Based on data from 3500 ha of forest inventory plots, our modelling results show that the average periodic harvests of 20 m3 ha−1 will not recover by the end of a standard 30 year cutting cycle. Timber recovery within a cutting cycle is enhanced by commercial acceptance of more species and with the adoption of longer cutting cycles and lower logging intensities. Recovery rates are faster in Western Amazonia than on the Guiana Shield. Our simulations suggest that regardless of cutting cycle duration and logging intensities, selectively logged forests are unlikely to meet timber demands over the long term as timber stocks are predicted to steadily decline. There is thus an urgent need to develop an integrated forest resource management policy that combines active management of production forests with the restoration of degraded and secondary forests for timber production. Without better management, reduced timber harvests and continued timber production declines are unavoidable. |
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IOP Publishing |
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1748-9326 |
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EcoFoG @ webmaster @ |
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875 |
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Piponiot, C.; Rutishauser, E.; Derroire, G.; Putz, F.E.; Sist, P.; West, T.A.P.; Descroix, L.; Guedes, M.C.; Coronado, E.N.H.; Kanashiro, M.; Mazzei, L.; d’Oliveira, M.V.N.; Peña-Claros, M.; Rodney, K.; Ruschel, A.R.; Souza, C.R. de; Vidal, E.; Wortel, V.; Hérault, B. |
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Title |
Optimal strategies for ecosystem services provision in Amazonian production forests |
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Journal Article |
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Year |
2019 |
Publication |
Environmental Research Letters |
Abbreviated Journal |
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Volume |
14 |
Issue |
12 |
Pages |
124090 |
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Abstract |
Although tropical forests harbour most of the terrestrial carbon and biological diversity on Earth they continue to be deforested or degraded at high rates. In Amazonia, the largest tropical forest on Earth, a sixth of the remaining natural forests is formally dedicated to timber extraction through selective logging. Reconciling timber extraction with the provision of other ecosystem services (ES) remains a major challenge for forest managers and policy-makers. This study applies a spatial optimisation of logging in Amazonian production forests to analyse potential trade-offs between timber extraction and recovery, carbon storage, and biodiversity conservation. Current logging regulations with unique cutting cycles result in sub-optimal ES-use efficiency. Long-term timber provision would require the adoption of a land-sharing strategy that involves extensive low-intensity logging, although high transport and road-building costs might make this approach economically unattractive. By contrast, retention of carbon and biodiversity would be enhanced by a land-sparing strategy restricting high-intensive logging to designated areas such as the outer fringes of the region. Depending on management goals and societal demands, either choice will substantially influence the future of Amazonian forests. Overall, our results highlight the need for revaluation of current logging regulations and regional cooperation among Amazonian countries to enhance coherent and trans-boundary forest management. |
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IOP Publishing |
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1748-9326 |
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EcoFoG @ webmaster @ |
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910 |
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Dejean, A.; Compin, A.; Delabie, J.H.C.; Azémar, F.; Corbara, B.; Leponce, M. |
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Title |
Biotic and abiotic determinants of the formation of ant mosaics in primary Neotropical rainforests |
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Journal Article |
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Year |
2019 |
Publication |
Ecological Entomology |
Abbreviated Journal |
Ecol Entomol |
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44 |
Issue |
4 |
Pages |
560-570 |
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Keywords |
Ant mosaics; connections on the ground; host tree attractiveness; indicators of disturbance; primary Neotropical rainforest; territoriality |
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1. Ants are widespread in tropical rainforests, including in the canopy where territorially dominant arboreal species represent the main part of the arthropod biomass.
2. By mapping the territories of dominant arboreal ant species and using a null model analysis and a pairwise approach this study was able to show the presence of an ant mosaic on the upper canopy of a primary Neotropical rainforest (c. 1ha sampled; 157 tall trees from 28 families). Although Neotropical rainforest canopies are frequently irregular, with tree crowns at different heights breaking the continuity of the territories of dominant ants, the latter are preserved via underground galleries or trails laid on the ground.
3. The distribution of the trees influences the structure of the ant mosaic, something related to the attractiveness of tree taxa for certain arboreal ant species rather than others.
4. Small-scale natural disturbances, most likely strong winds in the area studied (presence of canopy gaps), play a role by favouring the presence of two ant species typical of secondary formations: Camponotus femoratus and Crematogaster levior, which live in parabiosis (i.e. share territories and nests but lodge in different cavities) and build conspicuous ant gardens. In addition, pioneer Cecropia myrmecophytic trees were recorded. |
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John Wiley & Sons, Ltd (10.1111) |
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0307-6946 |
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Notes |
doi: 10.1111/een.12735 |
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EcoFoG @ webmaster @ |
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882 |
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Clair, B.; Ghislain, B.; Prunier, J.; Lehnebach, R.; Beauchene, J.; Alméras, T. |
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Mechanical contribution of secondary phloem to postural control in trees: the bark side of the force |
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Journal Article |
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Year |
2019 |
Publication |
New Phytologist |
Abbreviated Journal |
New Phytol |
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Volume |
221 |
Issue |
1 |
Pages |
209-217 |
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Keywords |
bark; Malvaceae; maturation stress; secondary phloem; tree biomechanics |
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Summary To grow straight, plants need a motor system that controls posture by generating forces to offset gravity. This motor function in trees was long thought to be only controlled by internal forces induced in wood. Here we provide evidence that bark is involved in the generation of mechanical stresses in several tree species. Saplings of nine tropical species were grown tilted and staked in a shadehouse and the change in curvature of the stem was measured after releasing from the pole and after removing the bark. This first experiment evidenced the contribution of bark in the up-righting movement of tree stems. Combined mechanical measurements of released strains on adult trees and microstructural observations in both transverse and longitudinal/tangential plane enabled us to identify the mechanism responsible for the development of asymmetric mechanical stress in the bark of stems of these species. This mechanism does not result from cell wall maturation like in wood, or from the direct action of turgor pressure like in unlignified organs, but is the consequence of the interaction between wood radial pressure and a smartly organized trellis structure in the inner bark. |
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John Wiley & Sons, Ltd (10.1111) |
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0028-646x |
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doi: 10.1111/nph.15375 |
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EcoFoG @ webmaster @ |
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853 |
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Zinger, L.; Taberlet, P.; Schimann, H.; Bonin, A.; Boyer, F.; De Barba, M.; Gaucher, P.; Gielly, L.; Giguet-Covex, C.; Iribar, A.; Réjou-Méchain, M.; Rayé, G.; Rioux, D.; Schilling, V.; Tymen, B.; Viers, J.; Zouiten, C.; Thuiller, W.; Coissac, E.; Chave, J. |
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Title |
Body size determines soil community assembly in a tropical forest |
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Journal Article |
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Year |
2019 |
Publication |
Molecular Ecology |
Abbreviated Journal |
Mol Ecol |
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Volume |
28 |
Issue |
3 |
Pages |
528-543 |
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DNA metabarcoding; eDNA; French Guiana; multitaxa; neutral assembly; niche determinism; propagule size; soil diversity |
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Tropical forests shelter an unparalleled biological diversity. The relative influence of environmental selection (i.e., abiotic conditions, biotic interactions) and stochastic?distance-dependent neutral processes (i.e., demography, dispersal) in shaping communities has been extensively studied for various organisms, but has rarely been explored across a large range of body sizes, in particular in soil environments. We built a detailed census of the whole soil biota in a 12-ha tropical forest plot using soil DNA metabarcoding. We show that the distribution of 19 taxonomic groups (ranging from microbes to mesofauna) is primarily stochastic, suggesting that neutral processes are prominent drivers of the assembly of these communities at this scale. We also identify aluminium, topography and plant species identity as weak, yet significant drivers of soil richness and community composition of bacteria, protists and to a lesser extent fungi. Finally, we show that body size, which determines the scale at which an organism perceives its environment, predicted the community assembly across taxonomic groups, with soil mesofauna assemblages being more stochastic than microbial ones. These results suggest that the relative contribution of neutral processes and environmental selection to community assembly directly depends on body size. Body size is hence an important determinant of community assembly rules at the scale of the ecological community in tropical soils and should be accounted for in spatial models of tropical soil food webs. |
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John Wiley & Sons, Ltd (10.1111) |
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0962-1083 |
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EcoFoG @ webmaster @ |
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873 |
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Caron, H.; Molino, J.-F.; Sabatier, D.; Léger, P.; Chaumeil, P.; Scotti-Saintagne, C.; Frigério, J.-M.; Scotti, I.; Franc, A.; Petit, R.J. |
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Title |
Chloroplast DNA variation in a hyperdiverse tropical tree community |
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Journal Article |
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Year |
2019 |
Publication |
Ecology and Evolution |
Abbreviated Journal |
Ecology and Evolution |
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Volume |
9 |
Issue |
8 |
Pages |
4897-4905 |
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chloroplast DNA; DNA barcoding; genetic diversity; hybridization; incomplete lineage sorting; introgression; species diversity; tropical trees |
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We investigate chloroplast DNA variation in a hyperdiverse community of tropical rainforest trees in French Guiana, focusing on patterns of intraspecific and interspecific variation. We test whether a species genetic diversity is higher when it has congeners in the community with which it can exchange genes and if shared haplotypes are more frequent in genetically diverse species, as expected in the presence of introgression. We sampled a total of 1,681 individual trees from 472 species corresponding to 198 genera and sequenced them at a noncoding chloroplast DNA fragment. Polymorphism was more frequent in species that have congeneric species in the study site than in those without congeners (30% vs. 12%). Moreover, more chloroplast haplotypes were shared with congeners in polymorphic species than in monomorphic ones (44% vs. 28%). Despite large heterogeneities caused by genus-specific behaviors in patterns of hybridization, these results suggest that the higher polymorphism in the presence of congeners is caused by local introgression rather than by incomplete lineage sorting. Our findings suggest that introgression has the potential to drive intraspecific genetic diversity in species-rich tropical forests. |
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INRA, UR629 Ecologie des Forêts Méditerranéennes, URFM, Avignon, France |
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John Wiley and Sons Ltd |
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20457758 (Issn) |
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EcoFoG @ webmaster @ |
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870 |
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Hartke, J.; Sprenger, P.P.; Sahm, J.; Winterberg, H.; Orivel, J.; Baur, H.; Beuerle, T.; Schmitt, T.; Feldmeyer, B.; Menzel, F. |
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Title |
Cuticular hydrocarbons as potential mediators of cryptic species divergence in a mutualistic ant association |
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Journal Article |
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Year |
2019 |
Publication |
Ecology and Evolution |
Abbreviated Journal |
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Volume |
9 |
Issue |
16 |
Pages |
9160-9176 |
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environmental association; integrative taxonomy; niche differentiation; population structure; sexual selection; speciation |
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Abstract |
Upon advances in sequencing techniques, more and more morphologically identical organisms are identified as cryptic species. Often, mutualistic interactions are proposed as drivers of diversification. Species of the neotropical parabiotic ant association between Crematogaster levior and Camponotus femoratus are known for highly diverse cuticular hydrocarbon (CHC) profiles, which in insects serve as desiccation barrier but also as communication cues. In the present study, we investigated the association of the ants’ CHC profiles with genotypes and morphological traits, and discovered cryptic species pairs in both genera. To assess putative niche differentiation between the cryptic species, we conducted an environmental association study that included various climate variables, canopy cover, and mutualistic plant species. Although mostly sympatric, the two Camponotus species seem to prefer different climate niches. However in the two Crematogaster species, we could not detect any differences in niche preference. The strong differentiation in the CHC profiles may thus suggest a possible role during speciation itself either by inducing assortative mating or by reinforcing sexual selection after the speciation event. We did not detect any further niche differences in the environmental parameters tested. Thus, it remains open how the cryptic species avoid competitive exclusion, with scope for further investigations. © 2019 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. |
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Department of Evolutionary Animal Ecology, University of Bayreuth, Bayreuth, Germany |
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John Wiley and Sons Ltd |
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20457758 (Issn) |
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Notes |
Export Date: 2 September 2019; Correspondence Address: Hartke, J.; Senckenberg Biodiversity and Climate Research CentreGermany; email: Juliane.Hartke@senckenberg.de; Funding details: Leibniz-Gemeinschaft; Funding details: Agence Nationale de la Recherche, Not Available; Funding details: Deutsche Forschungsgemeinschaft, DFG, ME 3842/5‐1; Funding text 1: We thank Philippe Cerdan and Aurelie Dourdain for research permissions in the Hydreco Lab Petit Saut and the Paracou Research Station, respectively. Similarly, we thank Patrick Châtelet, Philippe Gaucher, and Dorothée Deslignes for permission to sample in the Les Nouragues Reserve. Further on, we thank Heike Stypa for supporting us in preparing the chemical samples. We thank Aidin Niamir for his helpful advice regarding climate data analysis. Financial support for this study was provided by the German Science Foundation (DFG) as a grant to Barbara Feldmeyer (FE 1333/7‐1), Thomas Schmitt (SCHM 2645/7‐1), and Florian Menzel (ME 3842/5‐1) and a grant managed by the French Agence Nationale de la Recherche (CEBA, ref. ANR‐10‐LABX‐25‐01) to Jérôme Orivel. The publication of this article was funded by the Open Access Fund of the Leibniz Association. 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Lehnebach, R.; Bossu, J.; Va, S.; Morel, H.; Amusant, N.; Nicolini, E.; Beauchene, J. |
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Wood density variations of legume trees in French Guiana along the shade tolerance continuum: Heartwood effects on radial patterns and gradients |
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2019 |
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Forests |
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Forests |
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French Guiana; Growth-mortality rate; Heartwood; Heartwood extractives; Legumes; Sapwood; Shade tolerance; Tropical tree species; Wood density variations |
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Increasing or decreasing wood density (WD) from pith to bark is commonly observed in tropical tree species. The different types of WD radial variations, long been considered to depict the diversity of growth and mechanical strategies among forest guilds (heliophilic vs. shade-tolerant), were never analyzed in the light of heartwood (HW) formation. Yet, the additional mass of chemical extractives associated to HW formation increases WD and might affect both WD radial gradient (i.e., the slope of the relation between WD and radial distance) and pattern (i.e., linear or nonlinear variation). We studied 16 legumes species from French Guiana representing a wide diversity of growth strategies and positions on the shade-tolerance continuum. Using WD measurements and available HW extractives content values, we computed WD corrected by the extractive content and analyzed the effect of HW on WD radial gradients and patterns. We also related WD variations to demographic variables, such as sapling growth and mortality rates. Regardless of the position along the shade-tolerance continuum, correcting WD gradients reveals only increasing gradients. We determined three types of corrected WD patterns: (1) the upward curvilinear pattern is a specific feature of heliophilic species, whereas (2) the linear and (3) the downward curvilinear patterns are observed in both mid- and late-successional species. In addition, we found that saplings growth and mortality rates are better correlated with the corrected WD at stem center than with the uncorrected value: taking into account the effect of HW extractives on WD radial variations provides unbiased interpretation of biomass accumulation and tree mechanical strategies. Rather than a specific feature of heliophilic species, the increasing WD gradient is a shared strategy regardless of the shade tolerance habit. Finally, our study stresses to consider the occurrence of HW when using WD. |
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Ecology of Guianan Forests (EcoFoG), AgroParisTech, French Agricultural Research and International Cooperation Organization (CIRAD), French National Centre for Scientific Research (CNRS), French National Institute for Agricultural Research (INRA), Université des Antilles, Université de Guyane, Kourou, French Guiana, 97310, France |
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19994907 (Issn) |
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Export Date: 1 February 2019; Correspondence Address: Lehnebach, R.; Laboratory of Botany and Modeling of Plant Architecture and Vegetation (AMAP), French Agricultural Research and International Cooperation Organization (CIRAD)France; email: romain.lehnebach@cirad.fr; Funding details: Agence Nationale de la Recherche, ANR; Funding details: Federación Española de Enfermedades Raras, FEDER; Funding text 1: The authors thank Grégoire Vincent, Jean-François Molino, and Daniel Sabatier for providing demographical data.). The French Agricultural Research Centre for International Development (CIRAD) funded Romain Lehnebach PhD scholarship. This research project was also funded by the European Regional Development Fund (FEDER, no 31703) and benefits from an 'Investissements d'Avenir' grant managed by the French National Research Agency (CEBA, ref. 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