toggle visibility Search & Display Options

Select All    Deselect All
 |   | 
Details
   print
  Records Links
Author Van Langenhove, L.; Depaepe, T.; Vicca, S.; van den Berge, J.; Stahl, C.; Courtois, E.; Weedon, J.; Urbina, I.; Grau, O.; Asensio, D.; Peñuelas, J.; Boeckx, P.; Richter, A.; Van Der Straeten, D.; Janssens, I.A. pdf  url
doi  openurl
  Title Regulation of nitrogen fixation from free-living organisms in soil and leaf litter of two tropical forests of the Guiana shield Type Journal Article
  Year 2019 Publication Plant and Soil Abbreviated Journal (up) Plant Soil  
  Volume Issue Pages  
  Keywords Free-living nitrogen fixation; French Guiana; Molybdenum; Nutrients; Phosphorus; Tropical forest  
  Abstract Background and aims: Biological fixation of atmospheric nitrogen (N 2 ) is the main pathway for introducing N into unmanaged ecosystems. While recent estimates suggest that free-living N fixation (FLNF) accounts for the majority of N fixed in mature tropical forests, the controls governing this process are not completely understood. The aim of this study was to quantify FLNF rates and determine its drivers in two tropical pristine forests of French Guiana. Methods: We used the acetylene reduction assay to measure FLNF rates at two sites, in two seasons and along three topographical positions, and used regression analyses to identify which edaphic explanatory variables, including carbon (C), nitrogen (N), phosphorus (P) and molybdenum (Mo) content, pH, water and available N and P, explained most of the variation in FLNF rates. Results: Overall, FLNF rates were lower than measured in tropical systems elsewhere. In soils seasonal variability was small and FLNF rates differed among topographies at only one site. Water, P and pH explained 24% of the variation. In leaf litter, FLNF rates differed seasonally, without site or topographical differences. Water, C, N and P explained 46% of the observed variation. We found no regulatory role of Mo at our sites. Conclusions: Rates of FLNF were low in primary rainforest on poor soils on the Guiana shield. Water was the most important rate-regulating factor and FLNF increased with increasing P, but decreased with increasing N. Our results support the general assumption that N fixation in tropical lowland forests is limited by P availability. © 2019, The Author(s).  
  Address Department of Microbiology and Ecosystem Science, University of Vienna, Althanstr. 14, Vienna, 1090, Austria  
  Corporate Author Thesis  
  Publisher Springer International Publishing Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0032079x (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 868  
Permanent link to this record
 

 
Author Peguero, G.; Sardans, J.; Asensio, D.; Fernández-Martínez, M.; Gargallo-Garriga, A.; Grau, O.; Llusià, J.; Margalef, O.; Márquez, L.; Ogaya, R.; Urbina, I.; Courtois, E.A.; Stahl, C.; Van Langenhove, L.; Verryckt, L.T.; Richter, A.; Janssens, I.A.; Peñuelas, J. url  doi
openurl 
  Title Nutrient scarcity strengthens soil fauna control over leaf litter decomposition in tropical rainforests Type Journal Article
  Year 2019 Publication Proceedings. Biological sciences Abbreviated Journal (up) Proc. Biol. Sci.  
  Volume 286 Issue 1910 Pages 20191300  
  Keywords biogeochemistry; extracellular enzyme activity; litter decomposition; nutrients; soil fauna  
  Abstract Soil fauna is a key control of the decomposition rate of leaf litter, yet its interactions with litter quality and the soil environment remain elusive. We conducted a litter decomposition experiment across different topographic levels within the landscape replicated in two rainforest sites providing natural gradients in soil fertility to test the hypothesis that low nutrient availability in litter and soil increases the strength of fauna control over litter decomposition. We crossed these data with a large dataset of 44 variables characterizing the biotic and abiotic microenvironment of each sampling point and found that microbe-driven carbon (C) and nitrogen (N) losses from leaf litter were 10.1 and 17.9% lower, respectively, in the nutrient-poorest site, but this among-site difference was equalized when meso- and macrofauna had access to the litterbags. Further, on average, soil fauna enhanced the rate of litter decomposition by 22.6%, and this contribution consistently increased as nutrient availability in the microenvironment declined. Our results indicate that nutrient scarcity increases the importance of soil fauna on C and N cycling in tropical rainforests. Further, soil fauna is able to equalize differences in microbial decomposition potential, thus buffering to a remarkable extent nutrient shortages at an ecosystem level.  
  Address Department of Microbiology and Ecosystem Science, University of Vienna, Vienna, 1090, Austria  
  Corporate Author Thesis  
  Publisher NLM (Medline) Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 14712954 (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 884  
Permanent link to this record
 

 
Author Taureau, F.; Robin, M.; Proisy, C.; Fromard, F.; Imbert, D.; Debaine, F. pdf  url
doi  openurl
  Title Mapping the mangrove forest canopy using spectral unmixing of very high spatial resolution satellite images Type Journal Article
  Year 2019 Publication Remote Sensing Abbreviated Journal (up) Remote Sens.  
  Volume 11 Issue 3 Pages 367  
  Keywords Forest structure; Guadeloupe; Hemispherical photographs; Mangrove; Mayotte; New Caledonia; Remote sensing; Image resolution; Photography; Photomapping; Pixels; Remote sensing; Satellites; Vegetation; Forest structure; Guadeloupe; Hemispherical photographs; Mangrove; Mayotte; New Caledonia; Forestry  
  Abstract Despite the lowtree diversity and scarcity of the understory vegetation, the high morphological plasticity of mangrove trees induces, at the stand level, a very large variability of forest structures that need to be mapped for assessing the functioning of such complex ecosystems. Fully constrained linear spectral unmixing (FCLSU) of very high spatial resolution (VHSR) multispectral images was tested to fine-scale map mangrove zonations in terms of horizontal variation of forest structure. The study was carried out on three Pleiades-1A satellite images covering French island territories located in the Atlantic, Indian, and Pacific Oceans, namely Guadeloupe, Mayotte, and New Caledonia archipelagos. In each image, FCLSU was trained from the delineation of areas exclusively related to four components including either pure vegetation, soil (ferns included), water, or shadows. It was then applied to the whole mangrove cover imaged for each island and yielded the respective contributions of those four components for each image pixel. On the forest stand scale, the results interestingly indicated a close correlation between FCLSU-derived vegetation fractions and canopy closure estimated from hemispherical photographs R 2 = 0.95) and a weak relation with the Normalized Difference Vegetation Index (R 2 = 0.29). Classification of these fractions also offered the opportunity to detect and map horizontal patterns of mangrove structure in a given site. K-means classifications of fraction indeed showed a global view of mangrove structure organization in the three sites, complementary to the outputs obtained from spectral data analysis. Our findings suggest that the pixel intensity decomposition applied to VHSR multispectral satellite images can be a simple but valuable approach for (i) mangrove canopy monitoring and (ii) mangrove forest structure analysis in the perspective of assessing mangrove dynamics and productivity. As with Lidar-based surveys, these potential new mapping capabilities deserve further physically based interpretation of sunlight scattering mechanisms within forest canopy. © 2019 by the authors.  
  Address UMR Ecologie des Forêts de Guyane (EcoFoG), INRA, CNRS, Cirad, AgroParisTech, Université des Antilles, Université de Guyane, Kourou, French Guiana, 97310, France  
  Corporate Author Thesis  
  Publisher Mdpi Ag Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 20724292 (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Export Date: 25 February 2019; Correspondence Address: Taureau, F.; Université de Nantes, UMR CNRS 6554 Littoral Environnement Télédétection Géomatique, Campus TertreFrance; email: florent.taureau@univ-nantes.fr; Funding details: Université de Nantes; Funding text 1: Funding: A part of this study was funded by the French Coastal Conservancy Institute. It was conducted as part of the PhD work of Florent Taureau supported by the University of Nantes.; References: Duke, N.C., Mangrove Coast (2014) Encyclopedia of Marine Geosciences, pp. 1-17. , Harff, J., Meschede, M., Petersen, S., Thiede, J., Eds.; Springer: Berlin, Germany; Feller, I.C., Lovelock, C.E., Berger, U., McKee, K.L., Joye, S.B., Ball, M.C., Biocomplexity in Mangrove Ecosystems (2010) Annu. Rev. Mar. Sci, 2, pp. 395-417; Krauss, K.W., Lovelock, C.E., McKee, K.L., López-Hoffman, L., Ewe, S.M., Sousa, W.P., Environmental drivers in mangrove establishment and early development: A review (2008) Aquat. Bot, 89, pp. 105-127; Chapman, V.J., (1976) Mangrove Vegetation, , Cramer: Vaduz, Liechtenstein; Friess, D.A., Lee, S.Y., Primavera, J.H., Turning the tide on mangrove loss (2016) Mar. Pollut. Bull, 109, pp. 673-675; Alongi, D.M., Mangrove forests: Resilience, protection from tsunamis, and responses to global climate change (2008) Estuar. Coast. Shelf Sci, 76, pp. 1-13; Bouillon, S., Borges, A.V., Castañeda-Moya, E., Diele, K., Dittmar, T., Duke, N.C., Kristensen, E., Rivera-Monroy, V.H., Mangrove production and carbon sinks: A revision of global budget estimates: Global mangrove carbon budgets (2008) Glob. Biogeochem. Cycles, p. 22; Donato, D.C., Kauffman, J.B., Murdiyarso, D., Kurnianto, S., Stidham, M., Kanninen, M., Mangroves among the most carbon-rich forests in the tropics (2011) Nat. Geosci, 4, pp. 293-297; Duke, N.C., Nagelkerken, I., Agardy, T., Wells, S., van Bochove, J.-W., (2014) The Importance of Mangroves to People: A Call to Action, , United Nations Environment ProgrammeWorld Conservation Monitoring Centre: Cambridge, UK; De Lacerda, L.D., (2010) Mangrove Ecosystems: Function and Management, , Springer: Berlin, Germany; Lee, S.Y., Primavera, J.H., Dahdouh-Guebas, F., McKee, K., Bosire, J.O., Cannicci, S., Diele, K., Koedam, N., Cyril Marchand Ecological role and services of tropical mangrove ecosystems: a reassessment: Reassessment of mangrove ecosystem services (2014) Glob. Ecol. Biogeogr, 23, pp. 726-743; Spalding, M., Kainuma, M., Collins, L., (2010) World Atlas of Mangroves, , Routledge: Abingdon, UK; (2007) The World's Mangroves 1980-2005: A Thematic Study Prepared in the Framework of the Global Forest Resources Assessment 2005, , Food and Agriculture Organization of the United Nations: Rome, Italy; Ellison, J.C., Vulnerability assessment of mangroves to climate change and sea-level rise impacts (2015) Wetl. Ecol. Manag, 23, pp. 115-137; Ellison, J., Zouh, I., Vulnerability to Climate Change of Mangroves: Assessment from Cameroon, Central Africa (2012) Biology, 1, pp. 617-638; Gilman, E.L., Ellison, J., Duke, N.C., Field, C., Threats to mangroves from climate change and adaptation options: A review (2008) Aquat. Bot, 89, pp. 237-250; Li, S., Meng, X., Ge, Z., Zhang, L., Evaluation of the threat from sea-level rise to the mangrove ecosystems in Tieshangang Bay, Southern China (2015) Ocean Coast. Manag, 109, pp. 1-8; Alongi, D.M., Present state and future of the world's mangrove forests (2002) Environ. Conserv, 29, pp. 331-349; Panta, M., (2003) Analisys of Forest Canopy Density and Factors Affecting It Using RS and GIS Techniques-A Case Study from Chitwan District of Nepal, , International Institue for Geo-Information Science and Earth Observation: Hengelosestraat, The Netherlands; Birnbaum, P., Canopy surface topography in a French Guiana forest and the folded forest theory (2001) Plant Ecol, 153, pp. 293-300; Lowman, M.D., Schowalter, T., Franklin, J., (2012) Methods in Forest Canopy Research, , University of California Press: Berkeley, CA, USA; Parker, G.G., Structure and microclimate of forest canopies (1995) Forest Canopies: A Review of Research on a Biological Frontier, pp. 73-106. , Lowman, M., Nadkarni, N., Eds.; Academic Press: San Diego, CA, USA; Frazer, G.W., Trofymow, J.A., Lertzman, K.P., (1997) A Method for Estimating Canopy Openness, Effective Leaf Area Index, and Photosynthetically Active Photon Flux Density Using Hemispherical Photography and Computerized Image Analysis Techniques, , Canadian Forest Service, Pacific Forestry Centre: Victoria, BC, Canada; Smith, M.-L., Anderson, J., Fladeland, M., Forest canopy structural properties (2008) Field Measurements for Forest Carbon Monitoring: A Landscape-Scale Approach, pp. 179-196. , Springer: Berlin, Germany; Green, E.P., Clark, C.D., Mumby, P.J., Edwards, A.J., Ellis, A.C., Remote sensing techniques for mangrove mapping (1998) Int. J. Remote Sens, 19, pp. 935-956; Sari, S.P., Rosalina, D., Mapping and Monitoring of Mangrove Density Changes on tin Mining Area (2016) Procedia Environ. Sci, 33, pp. 436-442; Yuvaraj, E., Dharanirajan, K., Saravanan, N., Karpoorasundarapandian, N., (2014) Evaluation of Vegetation Density of the Mangrove Forest in South Andaman Island Using Remote Sensing and GIS Techniques, pp. 19-25. , International Science Congress Association: India; Garcia-Haro, F.J., Gilabert, M.A., Melia, J., Linear spectral mixture modelling to estimate vegetation amount from optical spectral data (1996) Int. J. Remote Sens, 17, pp. 3373-3400; Braun, M., Martin, H., Mapping imperviousness using NDVI and linear spectral unmixing of ASTER data in the Cologne-Bonn region (Germany) (2003) Proceedings of the SPIE 10th International Symposium on Remote Sensing, , Barcelona, Spain, 8-12 September; Drake, N.A., Mackin, S., Settle, J.J., Mapping Vegetation, Soils, and Geology in Semiarid Shrublands Using Spectral Matching and Mixture Modeling of SWIR AVIRIS Imagery (1999) Remote Sens. Environ, 68, pp. 12-25; Guerschman, J.P., Scarth, P.F., McVicar, T.R., Renzullo, L.J., Malthus, T.J., Stewart, J.B., Rickards, J.E., Trevithick, R., Assessing the effects of site heterogeneity and soil properties when unmixing photosynthetic vegetation, non-photosynthetic vegetation and bare soil fractions from Landsat and MODIS data (2015) Remote Sens. Environ, 161, pp. 12-26; Stagakis, S., Vanikiotis, T., Sykioti, O., Estimating forest species abundance through linear unmixing of CHRIS/PROBA imagery (2016) ISPRS J. Photogramm. Remote Sens, 119, pp. 79-89; Liu, T., Yang, X., Mapping vegetation in an urban area with stratified classification and multiple endmember spectral mixture analysis (2013) Remote Sens. Environ, 133, pp. 251-264; Silvan-Cardenas, J.L., Wang, L., Fully Constrained Linear Spectral Unmixing: Analytic Solution Using Fuzzy Sets (2010) IEEE Trans. Geosci. Remote Sens, 48, pp. 3992-4002; Souza, C., Mapping forest degradation in the Eastern Amazon from SPOT 4 through spectral mixture models (2003) Remote Sens. Environ, 87, pp. 494-506; Ji, M., Feng, J., Subpixel measurement of mangrove canopy closure via spectral mixture analysis (2011) Front. Earth Sci, 5, pp. 130-137; Tiner, R.W., Lang, M.W., Klemas, V.V., (2015) Remote Sensing of Wetlands: Applications and Advances, , CRC Press: Boca Raton, FL, USA; Haase, D., Jänicke, C., Wellmann, T., Front and back yard green analysis with subpixel vegetation fractions from earth observation data in a city (2019) Landsc. Urban Plan, 182, pp. 44-54; Dronova, I., Object-Based Image Analysis inWetland Research: A Review (2015) Remote Sens, 7, pp. 6380-6413; Fei, S.X., Shan, C.H., Hua, G.Z., Remote Sensing of Mangrove Wetlands Identification (2011) Procedia Environ. Sci, 10, pp. 2287-2293; Heumann, B.W., Satellite remote sensing of mangrove forests: Recent advances and future opportunities (2011) Prog. Phys. Geogr, 35, pp. 87-108; Proisy, C., Couteron, P., Fromard, F., Predicting and mapping mangrove biomass from canopy grain analysis using Fourier-based textural ordination of IKONOS images (2007) Remote Sens. Environ, 109, pp. 379-392; Imbert, D., Labbé, P., Rousteau, A., Hurricane damage and forest structure in Guadeloupe, French West Indies (1996) J. Trop. Ecol, 12, pp. 663-680; Herteman, M., Fromard, F., Lambs, L., Effects of pretreated domestic wastewater supplies on leaf pigment content, photosynthesis rate and growth of mangrove trees: A field study from Mayotte Island, SW Indian Ocean (2011) Ecol. Eng, 37, pp. 1283-1291; Cremades, C., (2010) Cartographie des Habitats Naturels des Mangroves de Mayotte, , Direction de l'Agriculture et de la Forêt Service Environnement et Forêt: Mamoudzou, Mayotte; Jeanson, M., (2009) Morphodynamique du Littoral de Mayotte: des Processus au Réseau de Surveillance, , Université du Littoral Côte d'Opale: Dunkerque, France; Marchand, C., Dumas, P., (2007) Typologies et Biodiversité des Mangroves de Nouvelle-Calédonie, , IRD: Nouméa, Nouvelle-Calédonie; Glatthorn, J., Beckschäfer, P., Standardizing the Protocol for Hemispherical Photographs: Accuracy Assessment of Binarization Algorithms (2014) PLoS ONE, 9; Betbeder, J., Nabucet, J., Pottier, E., Baudry, J., Corgne, S., Hubert-Moy, L., Detection and Characterization of Hedgerows Using TerraSAR-X Imagery (2014) Remote Sens, 6, pp. 3752-3769; Betbeder, J., Hubert-Moy, L., Burel, F., Corgne, S., Baudry, J., Assessing ecological habitat structure from local to landscape scales using synthetic aperture radar (2015) Ecol. Indic, 52, pp. 545-557; Betbeder, J., Rapinel, S., Corgne, S., Pottier, E., Hubert-Moy, L., TerraSAR-X dual-pol time-series for mapping of wetland vegetation (2015) ISPRS J. Photogramm. Remote Sens, 107, pp. 90-98; (2013), Reference Book, eCognition Developer 8.9'; Trimble: Sunnyvale, CA, USA; Lobell, D.B., Asner, G.P., Law, B.E., Treuhaft, R.N., View angle effects on canopy reflectance and spectral mixture analysis of coniferous forests using AVIRIS (2002) Int. J. Remote Sens, 23, pp. 2247-2262; Viennois, G., Proisy, C., Feret, J.B., Prosperi, J., Sidik, F., Suhardjono; Rahmania, R., Longépé, N., Gaspar, P., Multitemporal Analysis of High-Spatial-Resolution Optical Satellite Imagery for Mangrove Species Mapping in Bali, Indonesia (2016) IEEE J. Sel. Top. Appl. Earth Obs. Remote Sens, 9, pp. 3680-3686; Adler-Golden, S.M., Matthew, M.W., Bernstein, L.S., Levine, R.Y., Berk, A., Richtsmeier, S.C., Acharya, P.K., Hoke, M.L., Atmospheric Correction for Short-wave Spectral Imagery Based on MODTRAN4 (1999) Soc. Photo-Opt. Instrum. Eng, 3753, pp. 61-70; Adeline, K.R.M., Chen, M., Briottet, X., Pang, S.K., Paparoditis, N., Shadow detection in very high spatial resolution aerial images: A comparative study (2013) ISPRS J. Photogramm. Remote Sens, 80, pp. 21-38; Heinz, D.C., Fully constrained least squares linear spectral mixture analysis method for material quantification in hyperspectral imagery (2001) IEEE Trans. Geosci. Remote Sens, 39, pp. 529-545; Caliński, T., Harabasz, J., A dendrite method for cluster analysis (1974) Commun. Stat, 3, pp. 1-27; Asner, G.P., Warner, A.S., Canopy shadow in IKONOS satellite observations of tropical forests and savannas (2003) Remote Sens. Environ, 87, pp. 521-533; Dennison, P.E., Halligan, K.Q., Roberts, D.A., A comparison of error metrics and constraints for multiple endmember spectral mixture analysis and spectral angle mapper (2004) Remote Sens. Environ, 93, pp. 359-367; Kuusk, A., The Hot Spot Effect in Plant Canopy Reflectance (1991) Photon-Vegetation Interactions: Applications in Optical Remote Sensing and Plant Ecology, pp. 139-159. , Myneni, R.B., Ross, J., Eds.; Springer: Berlin/Heidelberg, Germany; Barbier, N., Proisy, C., Véga, C., Sabatier, D., Couteron, P., Bidirectional texture function of high resolution optical images of tropical forest: An approach using LiDAR hillshade simulations (2011) Remote Sens. Environ, 115, pp. 167-179; Fromard, F., Vega, C., Proisy, C., Half a century of dynamic coastal change affecting mangrove shorelines of French Guiana (2004) A case study based on remote sensing data analyses and field surveys. Mar. Geol, 208, pp. 265-280; Ozdemir, I., Linear transformation to minimize the effects of variability in understory to estimate percent tree canopy cover using RapidEye data (2014) GIS Remote Sens, 51, pp. 288-300; Proisy, C., Féret, J.B., Lauret, N., Gastellu-Etchegorry, J.P., Mangrove Forest Dynamics Using Very High Spatial Resolution Optical Remote Sensing A2-Baghdadi, Nicolas (2016) Land Surface Remote Sensing in Urban and Coastal Areas, pp. 269-295. , Zribi, M., Ed.; Elsevier: Amsterdam, The Netherlands Approved no  
  Call Number EcoFoG @ webmaster @ Serial 861  
Permanent link to this record
 

 
Author Marcon, E. url  doi
openurl 
  Title Entropy as a common measure of biodiversity and the spatial structure of economic activity Type Journal Article
  Year 2019 Publication Revue Economique Abbreviated Journal (up) Rev. Econ.  
  Volume 70 Issue 3 Pages 305-326  
  Keywords Diversity; Economic geography; Spatial concentration; Specialization  
  Abstract Measures of spatial concentration and specialization in economics are similar to those of biodiversity and ubiquity of species in ecology. Entropy is the fundamental tool that originated in statistical physics and information theory. The definition of number equivalents or effective numbers, that is the number of types in an ideal, simplified distribution, is introduced along with the partitioning of the joint diversity of a bi-dimensional distribution into absolute and relative concentration or specialization and replication. The whole framework is theoretically robust and allows measuring the spatial structure of a discrete space.  
  Address AgroParisTech, UMR Écologie des forêts de Guyane, CNRS, Cirad, INRA, Université des Antilles, Université de Guyane, Campus Agronomique, BP 701, Kourou, 97310, French Guiana  
  Corporate Author Thesis  
  Publisher Presses de Sciences Po Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 00352764 (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 912  
Permanent link to this record
 

 
Author Cantera, I.; Cilleros, K.; Valentini, A.; Cerdan, A.; Dejean, T.; Iribar, A.; Taberlet, P.; Vigouroux, R.; Brosse, S. pdf  url
doi  openurl
  Title Optimizing environmental DNA sampling effort for fish inventories in tropical streams and rivers Type Journal Article
  Year 2019 Publication Scientific Reports Abbreviated Journal (up) Sci. Rep.  
  Volume 9 Issue Pages 3085  
  Keywords  
  Abstract Environmental DNA (eDNA) metabarcoding is a promising tool to estimate aquatic biodiversity. It is based on the capture of DNA from a water sample. The sampled water volume, a crucial aspect for efficient species detection, has been empirically variable (ranging from few centiliters to tens of liters). This results in a high variability of sampling effort across studies, making comparisons difficult and raising uncertainties about the completeness of eDNA inventories. Our aim was to determine the sampling effort (filtered water volume) needed to get optimal inventories of fish assemblages in species-rich tropical streams and rivers using eDNA. Ten DNA replicates were collected in six Guianese sites (3 streams and 3 rivers), resulting in sampling efforts ranging from 17 to 340 liters of water. We show that sampling 34 liters of water detected more than 64% of the expected fish fauna and permitted to distinguish the fauna between sites and between ecosystem types (stream versus rivers). Above 68 liters, the number of detected species per site increased slightly, with a detection rate higher than 71%. Increasing sampling effort up to 340 liters provided little additional information, testifying that filtering 34 to 68 liters is sufficient to inventory most of the fauna in highly diverse tropical aquatic ecosystems. © 2019, The Author(s).  
  Address HYDRECO, Laboratoire Environnement de Petit Saut, B.P 823, Kourou Cedex, F-97388, French Guiana  
  Corporate Author Thesis  
  Publisher Nature Publishing Group Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 20452322 (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 865  
Permanent link to this record
 

 
Author Fu, T.; Houel, E.; Amusant, N.; Touboul, D.; Genta-Jouve, G.; Della-Negra, S.; Fisher, G.L.; Brunelle, A.; Duplais, C. pdf  url
doi  openurl
  Title Biosynthetic investigation of γ-lactones in Sextonia rubra wood using in situ TOF-SIMS MS/MS imaging to localize and characterize biosynthetic intermediates Type Journal Article
  Year 2019 Publication Scientific Reports Abbreviated Journal (up) Sci. Rep.  
  Volume 9 Issue Pages 1928  
  Keywords  
  Abstract Molecular analysis by parallel tandem mass spectrometry (MS/MS) imaging contributes to the in situ characterization of biosynthetic intermediates which is crucial for deciphering the metabolic pathways in living organisms. We report the first use of TOF-SIMS MS/MS imaging for the cellular localization and characterization of biosynthetic intermediates of bioactive γ-lactones rubrynolide and rubrenolide in the Amazonian tree Sextonia rubra (Lauraceae). Five γ-lactones, including previously reported rubrynolide and rubrenolide, were isolated using a conventional approach and their structural characterization and localization at a lateral resolution of ~400 nm was later achieved using TOF-SIMS MS/MS imaging analysis. 2D/3D MS imaging at subcellular level reveals that putative biosynthetic γ-lactones intermediates are localized in the same cell types (ray parenchyma cells and oil cells) as rubrynolide and rubrenolide. Consequently, a revised metabolic pathway of rubrynolide was proposed, which involves the reaction between 2-hydroxysuccinic acid and 3-oxotetradecanoic acid, contrary to previous studies suggesting a single polyketide precursor. Our results provide insights into plant metabolite production in wood tissues and, overall, demonstrate that combining high spatial resolution TOF-SIMS imaging and MS/MS structural characterization offers new opportunities for studying molecular and cellular biochemistry in plants. © 2019, The Author(s).  
  Address Physical Electronics, Chanhassen, MN 55317, United States  
  Corporate Author Thesis  
  Publisher Nature Publishing Group Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 20452322 (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 866  
Permanent link to this record
 

 
Author Rodrigues, A.M.S.; Eparvier, V.; Odonne, G.; Amusant, N.; Stien, D.; Houël, E. pdf  url
doi  openurl
  Title The antifungal potential of (Z)-ligustilide and the protective effect of eugenol demonstrated by a chemometric approach Type Journal Article
  Year 2019 Publication Scientific Reports Abbreviated Journal (up) Sci. Rep.  
  Volume 9 Issue Pages 8729  
  Keywords  
  Abstract Mankind is on the verge of a postantibiotic era. New concepts are needed in our battle to attenuate infectious diseases around the world and broad spectrum plant-inspired synergistic pharmaceutical preparations should find their place in the global fight against pathogenic microorganisms. To progress towards the discovery of potent antifungal agents against human pathologies, we embarked upon developing chemometric approach coupled with statistical design to unravel the origin of the anticandidal potential of a set of 66 essential oils (EOs). EOs were analyzed by GC-MS and tested against Candida albicans and C. parapsilosis (Minimal Inhibitory Concentration, MIC). An Orthogonal Partial Least Square (OPLS) analysis allowed us to identify six molecules presumably responsible for the anticandidal activity of the oils: (Z)-ligustilide, eugenol, eugenyl acetate, citral, thymol, and β-citronellol. These compounds were combined following a full factorial experimental design approach in order to optimize the anticandidal activity and selectivity index (SI = IC50(MRC5 cells)/MIC) through reconstituted mixtures. (Z)-Ligustilide and citral were the most active compounds, while (Z)-ligustilide and eugenol were the two main factors that most contributed to the increase of the SI. These two terpenes can, therefore, be used to construct bioinspired synergistic anticandidal mixtures. © 2019, The Author(s).  
  Address CNRS, UMR EcoFoG, AgroParisTech, Cirad, INRA, Université des Antilles, Université de Guyane, Cayenne, 97300, France  
  Corporate Author Thesis  
  Publisher Nature Publishing Group Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 20452322 (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 876  
Permanent link to this record
 

 
Author Aubry-Kientz, M.; Rossi, V.; Cornu, G.; Wagner, F.; Herault, B. pdf  url
doi  openurl
  Title Temperature rising would slow down tropical forest dynamic in the Guiana Shield Type Journal Article
  Year 2019 Publication Scientific Reports Abbreviated Journal (up) Sci. Rep.  
  Volume 9 Issue Pages 10235  
  Keywords article; biomass; climate change; controlled study; diagnostic test accuracy study; driver; human; joint; mortality rate; precipitation; prediction; sensitivity analysis; simulation; statistics; tree growth; tropical rain forest; water stress  
  Abstract Increasing evidence shows that the functioning of the tropical forest biome is intimately related to the climate variability with some variables such as annual precipitation, temperature or seasonal water stress identified as key drivers of ecosystem dynamics. How tropical tree communities will respond to the future climate change is hard to predict primarily because several demographic processes act together to shape the forest ecosystem general behavior. To overcome this limitation, we used a joint individual-based model to simulate, over the next century, a tropical forest community experiencing the climate change expected in the Guiana Shield. The model is climate dependent: temperature, precipitation and water stress are used as predictors of the joint growth and mortality rates. We ran simulations for the next century using predictions of the IPCC 5AR, building three different climate scenarios (optimistic RCP2.6, intermediate, pessimistic RCP8.5) and a control (current climate). The basal area, above-ground fresh biomass, quadratic diameter, tree growth and mortality rates were then computed as summary statistics to characterize the resulting forest ecosystem. Whatever the scenario, all ecosystem process and structure variables exhibited decreasing values as compared to the control. A sensitivity analysis identified the temperature as the strongest climate driver of this behavior, highlighting a possible temperature-driven drop of 40% in average forest growth. This conclusion is alarming, as temperature rises have been consensually predicted by all climate scenarios of the IPCC 5AR. Our study highlights the potential slow-down danger that tropical forests will face in the Guiana Shield during the next century. © 2019, The Author(s).  
  Address Institut National Polytechnique Félix Houphouët-Boigny (INP-HB), Yamoussoukro, Cote d'Ivoire  
  Corporate Author Thesis  
  Publisher Nature Publishing Group Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 20452322 (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 878  
Permanent link to this record
 

 
Author Vleminckx, J.; Schimann, H.; Decaëns, T.; Fichaux, M.; Vedel, V.; Jaouen, G.; Roy, M.; Lapied, E.; Engel, J.; Dourdain, A.; Petronelli, P.; Orivel, J.; Baraloto, C. pdf  doi
openurl 
  Title Coordinated community structure among trees, fungi and invertebrate groups in Amazonian rainforests Type Journal Article
  Year 2019 Publication Scientific Reports Abbreviated Journal (up) Sci. Rep.  
  Volume 9 Issue Pages 11337  
  Keywords  
  Abstract Little is known regarding how trophic interactions shape community assembly in tropical forests. Here we assess multi-taxonomic community assembly rules using a rare standardized coordinated inventory comprising exhaustive surveys of five highly-diverse taxonomic groups exerting key ecological functions: trees, fungi, earthworms, ants and spiders. We sampled 36 1.9-ha plots from four remote locations in French Guiana including precise soil measurements, and we tested whether species turnover was coordinated among groups across geographic and edaphic gradients. All species group pairs exhibited significant compositional associations that were independent from soil conditions. For some of the pairs, associations were also partly explained by soil properties, especially soil phosphorus availability. Our study provides evidence for coordinated turnover among taxonomic groups beyond simple relationships with environmental factors, thereby refining our understanding regarding the nature of interactions occurring among these ecologically important groups. © 2019, The Author(s).  
  Address CIRAD, UMR Ecologie des Forêts de Guyane, Campus agronomique, BP 316, Kourou Cedex, 97379, France  
  Corporate Author Thesis  
  Publisher Nature Publishing Group Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 20452322 (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 879  
Permanent link to this record
 

 
Author Maurice, L.; López, F.; Becerra, S.; Jamhoury, H.; Le Menach, K.; Dévier, M.-H.; Budzinski, H.; Prunier, J.; Juteau-Martineau, G.; Ochoa-Herrera, V.; Quiroga, D.; Schreck, E. doi  openurl
  Title Drinking water quality in areas impacted by oil activities in Ecuador: Associated health risks and social perception of human exposure Type Journal Article
  Year 2019 Publication Science of the Total Environment Abbreviated Journal (up) Sci. Total Environ.  
  Volume 690 Issue Pages 1203-1217  
  Keywords Demineralized waters; Domestic waters; Hydrocarbons; Metal(loid)s; Oil activities; Social risk perception; Benzene refining; Health; Health risks; Hydrocarbons; Petroleum refineries; Petroleum refining; Polycyclic aromatic hydrocarbons; Potable water; Risk assessment; Risk perception; Toluene; Trace elements; Water quality; Water wells; Zinc; Arsenic concentration; Demineralized water; Domestic water; Information sources; Living conditions; Microbiological analysis; Natural backgrounds; Oil activities; Water distribution systems  
  Abstract The unregulated oil exploitation in the Northern Ecuadorian Amazon Region (NEAR), mainly from 1964 to the 90's, led to toxic compounds largely released into the environment. A large majority of people living in the Amazon region have no access to drinking water distribution systems and collects water from rain, wells or small streams. The concentrations of major ions, trace elements, PAHs (polycyclic aromatic hydrocarbons) and BTEX (benzene, toluene, ethylbenzene, xylenes) were analyzed in different water sources to evaluate the impacts of oil extraction and refining. Samples were taken from the NEAR and around the main refinery of the country (Esmeraldas Oil Refinery/State Oil Company of Ecuador) and were compared with domestic waters from the Southern region, not affected by petroleum activities. In most of the samples, microbiological analysis revealed a high level of coliforms representing significant health risks. All measured chemical compounds in waters were in line with national and international guidelines, except for manganese, zinc and aluminum. In several deep-water wells, close to oil camps, toluene concentrations were higher than the natural background while PAHs concentrations never exceeded individually 2 ng·L−1. Water ingestion represented 99% of the total exposure pathways for carcinogenic and non-carcinogenic elements (mainly zinc) in adults and children, while 20% to 49% of the Total Cancer Risk was caused by arsenic concentrations. The health index (HI) indicates acceptable chronic effects for domestic use according the US-EPA thresholds. Nevertheless, these limits do not consider the cocktail effects of metallic and organic compounds. Furthermore, they do not include the social determinants of human exposure, such as socio-economic living conditions or vulnerability. Most (72%) of interviewed families knew sanitary risks but a discrepancy was observed between knowledge and action: religious beliefs, cultural patterns, information sources, experience and emotions play an important role front to exposure. © 2019  
  Address Department of Environmental Sciences and Engineering, Gillings School of Global Public Health, University of North Carolina at Chapel HillNC 2759, United States  
  Corporate Author Thesis  
  Publisher Elsevier B.V. Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 00489697 (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 877  
Permanent link to this record
Select All    Deselect All
 |   | 
Details
   print

Save Citations:
Export Records: