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Pavoine, S.; Marcon, E.; Ricotta, C. |
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‘Equivalent numbers’ for species, phylogenetic or functional diversity in a nested hierarchy of multiple scales |
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2016 |
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Methods in Ecology and Evolution |
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Methods in Ecology and Evolution |
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7 |
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10 |
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1152-1163 |
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alpha diversity; beta diversity; biodiversity; community ecology; community phylogenetics; diversity apportionment; gamma diversity; quadratic entropy |
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Many recent studies have searched to integrate species’ functions and phylogenies in the measurement of biodiversity. To obtain easily interpretable measures, some researchers recommended diversity indices expressed in terms of equivalent numbers of species: the number of equally likely and maximally dissimilar species needed to produce the given value of diversity. Then, biodiversity is often calculated at three scales: within communities (α diversity), among communities (β diversity) and in a region (γ diversity). These three scales are, however, insufficient to tackle the organization of biodiversity in space because, for most organisms, there is a nested hierarchy of multiple scales characterized by different patterns and processes, from the small neighbourhood to the biosphere. We developed methodologies for analysing species, functional, taxonomic or phylogenetic diversity in a hierarchy of multiple scales using equivalent numbers of species. As an example, we analysed the taxonomic and functional diversity of macroinvertebrate assemblages in the Loire River, France, at four levels: within sites (α diversity), among sites within geological regions (β1 diversity), among geological regions (β2 diversity) and at the river scale (γ diversity). The new hierarchical approaches of biodiversity revealed very low differences among sites within regions and among regions in terms of taxonomy and functional traits (size and diet), despite moderate, significant species turnover among geological regions. We compare our framework with those other authors have developed. We argue that different definitions of α, β, γ diversities are used in the literature reflecting different points of view on biodiversity. We make recommendations on how to normalize functional (or phylogenetic) dissimilarities among species to render sites and regions comparable, and discuss the pros and cons of our approach. The hierarchical approaches of biodiversity in terms of ‘equivalent numbers’ respond to current demands to obtain intuitive, easily interpretable components of biodiversity. The approaches we propose go beyond current developments by considering a hierarchy of spatial scales and unbalanced sampling design. They will provide powerful tools to detect the ecological and evolutionary processes that act differently at different scales. © 2016 The Authors. Methods in Ecology and Evolution © 2016 British Ecological Society |
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Department of Environmental Biology, University of Rome ‘La Sapienza’, Piazzale Aldo Moro 5, Rome, Italy |
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Export Date: 20 October 2016 |
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EcoFoG @ webmaster @ |
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697 |
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Verheyen, K.; Vanhellemont, M.; Auge, H.; Baeten, L.; Baraloto, C.; Barsoum, N.; Bilodeau-Gauthier, S.; Bruelheide, H.; Castagneyrol, B.; Godbold, D.; Haase, J.; Hector, A.; Jactel, H.; Koricheva, J.; Loreau, M.; Mereu, S.; Messier, C.; Muys, B.; Nolet, P.; Paquette, A.; Parker, J.; Perring, M.; Ponette, Q.; Potvin, C.; Reich, P.; Smith, A.; Weih, M.; Scherer-Lorenzen, M. |
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Contributions of a global network of tree diversity experiments to sustainable forest plantations |
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2016 |
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Ambio |
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Ambio |
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45 |
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1 |
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29-41 |
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Biodiversity experiments; Ecological restoration; Functional biodiversity research; Plantation forest; Sustainable forest management |
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The area of forest plantations is increasing worldwide helping to meet timber demand and protect natural forests. However, with global change, monospecific plantations are increasingly vulnerable to abiotic and biotic disturbances. As an adaption measure we need to move to plantations that are more diverse in genotypes, species, and structure, with a design underpinned by science. TreeDivNet, a global network of tree diversity experiments, responds to this need by assessing the advantages and disadvantages of mixed species plantations. The network currently consists of 18 experiments, distributed over 36 sites and five ecoregions. With plantations 1–15 years old, TreeDivNet can already provide relevant data for forest policy and management. In this paper, we highlight some early results on the carbon sequestration and pest resistance potential of more diverse plantations. Finally, suggestions are made for new, innovative experiments in understudied regions to complement the existing network. © 2015, Royal Swedish Academy of Sciences. |
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Department of Crop Production Ecology, Swedish University of Agricultural Sciences, PO Box 7043, Uppsala, Sweden |
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Export Date: 29 January 2016 |
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652 |
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Kunstler, G.; Falster, D.; Coomes, D.A.; Hui, F.; Kooyman, R.M.; Laughlin, D.C.; Poorter, L.; Vanderwel, M.; Vieilledent, G.; Wright, S.J.; Aiba, M.; Baraloto, C.; Caspersen, J.; Cornelissen, J.H.C.; Gourlet-Fleury, S.; Hanewinkel, M.; Herault, B.; Kattge, J.; Kurokawa, H.; Onoda, Y.; Peñuelas, J.; Poorter, H.; Uriarte, M.; Richardson, S.; Ruiz-Benito, P.; Sun, I.-F.; Ståhl, G.; Swenson, N.G.; Thompson, J.; Westerlund, B.; Wirth, C.; Zavala, M.A.; Zeng, H.; Zimmerman, J.K.; Zimmermann, N.E.; Westoby, M. |
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Plant functional traits have globally consistent effects on competition |
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2016 |
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Nature |
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Nature |
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529 |
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7585 |
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204-207 |
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Phenotypic traits and their associated trade-offs have been shown to have globally consistent effects on individual plant physiological functions, but how these effects scale up to influence competition, a key driver of community assembly in terrestrial vegetation, has remained unclear. Here we use growth data from more than 3 million trees in over 140,000 plots across the world to show how three key functional traits – wood density, specific leaf area and maximum height – consistently influence competitive interactions. Fast maximum growth of a species was correlated negatively with its wood density in all biomes, and positively with its specific leaf area in most biomes. Low wood density was also correlated with a low ability to tolerate competition and a low competitive effect on neighbours, while high specific leaf area was correlated with a low competitive effect. Thus, traits generate trade-offs between performance with competition versus performance without competition, a fundamental ingredient in the classical hypothesis that the coexistence of plant species is enabled via differentiation in their successional strategies. Competition within species was stronger than between species, but an increase in trait dissimilarity between species had little influence in weakening competition. No benefit of dissimilarity was detected for specific leaf area or wood density, and only a weak benefit for maximum height. Our trait-based approach to modelling competition makes generalization possible across the forest ecosystems of the world and their highly diverse species composition. © 2016 Macmillan Publishers Limited. All rights reserved. |
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Forestry and Forest Products Research Institute, Tsukuba, Japan |
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Cited By :1; Export Date: 29 January 2016 |
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EcoFoG @ webmaster @ |
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653 |
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Díaz, S.; Kattge, J.; Cornelissen, J.H.C.; Wright, I.J.; Lavorel, S.; Dray, S.; Reu, B.; Kleyer, M.; Wirth, C.; Colin Prentice, I.; Garnier, E.; Bönisch, G.; Westoby, M.; Poorter, H.; Reich, P.B.; Moles, A.T.; Dickie, J.; Gillison, A.N.; Zanne, A.E.; Chave, J.; Joseph Wright, S.; Sheremet’ev, S.N.; Jactel, H.; Baraloto, C.; Cerabolini, B.; Pierce, S.; Shipley, B.; Kirkup, D.; Casanoves, F.; Joswig, J.S.; Günther, A.; Falczuk, V.; Rüger, N.; Mahecha, M.D.; Gorné, L.D. |
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The global spectrum of plant form and function |
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2016 |
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Nature |
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Nature |
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529 |
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7585 |
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167-171 |
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Earth is home to a remarkable diversity of plant forms and life histories, yet comparatively few essential trait combinations have proved evolutionarily viable in today’s terrestrial biosphere. By analysing worldwide variation in six major traits critical to growth, survival and reproduction within the largest sample of vascular plant species ever compiled, we found that occupancy of six-dimensional trait space is strongly concentrated, indicating coordination and trade-offs. Three-quarters of trait variation is captured in a two-dimensional global spectrum of plant form and function. One major dimension within this plane reflects the size of whole plants and their parts; the other represents the leaf economics spectrum, which balances leaf construction costs against growth potential. The global plant trait spectrum provides a backdrop for elucidating constraints on evolution, for functionally qualifying species and ecosystems, and for improving models that predict future vegetation based on continuous variation in plant form and function. |
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Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. |
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0028-0836 |
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EcoFoG @ webmaster @ |
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654 |
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Rodríguez-Pérez, H.; Hilaire, S.; Mesléard, F. |
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Temporary pond ecosystem functioning shifts mediated by the exotic red swamp crayfish (Procambarus clarkii): a mesocosm study |
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Journal Article |
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2016 |
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Hydrobiologia |
Abbreviated Journal |
Hydrobiologia |
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767 |
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1 |
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333-345 |
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Ecosystem functioning; Exotic crayfish; Procambarus clarkii; Temporary pond |
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Temporary ponds, acknowledged for their conservation value, are colonized by the invasive crayfish Procambarus clarkii. We have tested the consequences of this colonization for the ecosystem under two contrasted scenarios: one single individual arrival or three individuals arrival. We recreated the temporary pond ecosystem in 1 m2 tanks to investigate the impact of the two crayfish densities. We studied the macrophyte community composition and abundance, chlorophyll a and total suspended solids concentrations, and the diversity and functional composition of micro-crustacean and macro-invertebrate communities. We observed a reduction of macrophyte biomass in experimental crayfish mesocosms in comparison with control tanks, nearly 80 and 40% less in 3 and 1 crayfish/m2 tanks, respectively. The macrophyte community shifted, followed by a filamentous algae development, an increase of bare sediment and turbidity in crayfish tanks. The macro-invertebrate community suffered a richness loss of 28 and 22%, in 3 and 1 crayfish/m2 tanks, respectively. Functionally, macro-invertebrate diversity reduction most strongly affected the grazer, detritivore and predator trophic groups. Microcrustaceans seemed not to be affected by the introduction of the crayfish. The introduction of the crayfish greatly altered the ecosystem structure and subsequently the ecosystem functioning. © 2015, Springer International Publishing Switzerland. |
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EcoFoG, Ecologie des Forêts de Guyane, CNRS UMR 8172, Campus Agronomique, BP 316, Kourou Cedex, France |
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Export Date: 8 February 2016 |
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EcoFoG @ webmaster @ |
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655 |
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Touchard, A.; Aili, S.R.; Fox, E.G.P.; Escoubas, P.; Orivel, J.; Nicholson, G.M.; Dejean, A. |
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The biochemical toxin arsenal from ant venoms |
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2016 |
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Toxins |
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Toxins |
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8 |
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1 |
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30 |
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Alkaloids; Ant venom; Enzymes; Formic acid; Peptides; Toxins; Venom biochemistry |
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Ants (Formicidae) represent a taxonomically diverse group of hymenopterans with over 13,000 extant species, the majority of which inject or spray secretions from a venom gland. The evolutionary success of ants is mostly due to their unique eusociality that has permitted them to develop complex collaborative strategies, partly involving their venom secretions, to defend their nest against predators, microbial pathogens, ant competitors, and to hunt prey. Activities of ant venom include paralytic, cytolytic, haemolytic, allergenic, pro-inflammatory, insecticidal, antimicrobial, and pain-producing pharmacologic activities, while non-toxic functions include roles in chemical communication involving trail and sex pheromones, deterrents, and aggregators. While these diverse activities in ant venoms have until now been largely understudied due to the small venom yield from ants, modern analytical and venomic techniques are beginning to reveal the diversity of toxin structure and function. As such, ant venoms are distinct from other venomous animals, not only rich in linear, dimeric and disulfide-bonded peptides and bioactive proteins, but also other volatile and non-volatile compounds such as alkaloids and hydrocarbons. The present review details the unique structures and pharmacologies of known ant venom proteinaceous and alkaloidal toxins and their potential as a source of novel bioinsecticides and therapeutic agents. © 2016 by the authors; licensee MDPI, Basel, Switzerland. |
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Laboratoire Écologie Fonctionnelle et Environnement, 118 Route de Narbonne, Toulouse, France |
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Export Date: 8 February 2016 |
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EcoFoG @ webmaster @ |
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656 |
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Doughty, C.E.; Wolf, A.; Baraloto, C.; Malhi, Y. |
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Interdependency of plants and animals in controlling the sodium balance of ecosystems and the impacts of global defaunation |
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2016 |
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Ecography |
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Ecography |
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39 |
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2 |
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204-212 |
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Sodium, an element which is needed by animals but often toxic in high concentrations to plants, may be deficient and limit animal abundance in inland continental regions, but may be overabundant and limit plant productivity in coastal regions. Here we present data from 50 independent plots (including leaf data from more than 2480 individual trees) showing that leaves in the Amazon basin uptake high amounts of sodium (Na) in a manner more similar to the essential cation potassium (K) than to the toxic cation aluminium (Al). Leaf Na increases linearly with soil Na concentrations, and there is no apparent mechanism for selective exclusion of Na in comparison to K, a key attribute of halophytes. This indicates that the Amazon basin is broadly non-halophytic and increased sodium concentrations in non-halophyte plants often decrease plant productivity. Total Na concentrations are ∼ 10 times higher in coastal regions than inland regions. Such concentration gradients in nutrients may have been reduced in the past because large animals that were abundant in the Pleistocene have been hypothesized to play a large role in reducing nutrient concentration gradients at continental scales. We use a diffusion model and a Na loss rate based on empirical data to estimate that large animals may have moved significant quantities of Na inland away from coastal regions in the Amazon Basin. Therefore, our simple model suggests that large animals may play an important, yet diminishing, role in maintaining the sodium balance of the planet. © 2016 Nordic Society Oikos. |
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INRA UMR Ecologie des Forêts de Guyane, French Guiana, and International Center for Tropical Botany, Dept of Biological Sciences, Florida International Univ., Miami, United States |
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Cited By :2; Export Date: 12 February 2016 |
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EcoFoG @ webmaster @ |
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657 |
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Roy, M.; Schimann, H.; Braga-Neto, R.; Da Silva, R.A.E.; Duque, J.; Frame, D.; Wartchow, F.; Neves, M.A. |
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Diversity and Distribution of Ectomycorrhizal Fungi from Amazonian Lowland White-sand Forests in Brazil and French Guiana |
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2016 |
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Biotropica |
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Biotropica |
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48 |
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1 |
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90-100 |
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campina; campinarana; Amanitaceae; Amanitaceae; Boletaceae; Boletaceae; Campina; Campinarana; Herbarium; Herbário; Russulaceae; Russulaceae |
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White-sand forests are thought to host many ectomycorrhizal fungi, as demonstrated by the numerous fruiting body collections made by Rolf Singer in the lower Rio Negro in the late 1970s. Despite recognition of the importance of ectomycorrhizal fungi in white-sand forests, there has not yet been a systematic examination of diversity and taxonomic composition across white-sand forests, or more widely across lowland Amazonian forests. In an effort to broaden our view of ectomycorrhizal fungal diversity and distribution on white-sand forests, we collected ectomycorrhizal fruiting bodies in 10 plots of white-sand forests in Brazil and French Guiana between 2012 and 2014. We collected 221 specimens and 62 morphospecies, from the 10 plots, confirming that all studied white-sand forests host ectomycorrhizal fungi. Additionally, we searched for taxa associated with white sands among specimens deposited in Brazilian herbaria. We report 1006 unique ectomycorrhizal specimen records in 18 Brazilian herbaria, of which 137 specimens and 64 species are reported from white-sand forests, mainly in the state of Amazonas, Brazil. Russulaceae and Amanitaceae were frequent in all habitats, and Cortinarius were more frequent on white sands. Our results highlight the high diversity and heterogeneity of ectomycorrhizal communities on white-sand forests, and the wide distribution of ectomycorrhizal fungi throughout Brazil, irrespective of soil type. © 2016 The Association for Tropical Biology and Conservation. |
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Departamento de Sistemática e Ecologia, Universidade Federal da Paraíba, João Pessoa, PB, Brazil |
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Cited By :2; Export Date: 12 February 2016 |
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EcoFoG @ webmaster @ |
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658 |
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Fine, P.V.A.; Baraloto, C. |
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Habitat Endemism in White-sand Forests: Insights into the Mechanisms of Lineage Diversification and Community Assembly of the Neotropical Flora |
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2016 |
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Biotropica |
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Biotropica |
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48 |
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24-33 |
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Amazon; Endemic; Functional traits; Habitat specialization; Niche conservatism; Speciation |
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White-sand forests represent natural laboratories of evolution over their long history throughout Amazonia and the Guiana Shield and pose significant physiological challenges to the plants and animals they host. The study of diversification in plant lineages comprising species endemic to white-sand forest can therefore give insights into processes of evolution and community assembly in tropical forests. In this article, we synthesize recent studies of white-sand forests to integrate patterns of plant species distribution with processes of lineage diversification and community assembly in the white-sand flora. We contrast lineages that have radiated uniquely in these habitats (e.g., Pagamea, Rubiaceae), with cosmopolitan lineages comprising specialists to white-sand forests and other habitats that may have arisen via ecological speciation across habitat gradients (e.g., Protium, Burseraceae). In both cases, similar suites of functional traits have evolved, including investment in dense, long-lived tissues that are well-defended structurally and chemically. White-sand endemics, therefore, play an important role in biodiversity conservation because they represent unique combinations of functional and phylogenetic diversity. Furthermore, white-sand endemics may respond differently than other tropical forest plant species to contemporary global changes because they comprise resilient functional types that may better withstand increased drought, temperature, and invasions of exotic pests in these regions. © 2016 The Association for Tropical Biology and Conservation. |
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Department of Biological Sciences and International Center for Tropical Botany, Florida International University, Miami, FL, United States |
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Cited By :3; Export Date: 12 February 2016 |
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659 |
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Guevara, J.E.; Damasco, G.; Baraloto, C.; Fine, P.V.A.; Peñuela, M.C.; Castilho, C.; Vincentini, A.; Cárdenas, D.; Wittmann, F.; Targhetta, N.; Phillips, O.; Stropp, J.; Amaral, I.; Maas, P.; Monteagudo, A.; Jimenez, E.M.; Thomas, R.; Brienen, R.; Duque, A.; Magnusson, W.; Ferreira, C.; Honorio, E.; de Almeida Matos, F.; Arevalo, F.R.; Engel, J.; Petronelli, P.; Vasquez, R.; ter Steege, H. |
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Low Phylogenetic Beta Diversity and Geographic Neo-endemism in Amazonian White-sand Forests |
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2016 |
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Biotropica |
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Biotropica |
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48 |
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1 |
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34-46 |
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Amazon; Neo-endemism; Phylogenetic beta diversity; Recent diversification; White sands |
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Over the past three decades, many small-scale floristic studies of white-sand forests across the Amazon basin have been published. Nonetheless, a basin-wide description of both taxonomic and phylogenetic alpha and beta diversity at regional scales has never been achieved. We present a complete floristic analysis of white-sand forests across the Amazon basin including both taxonomic and phylogenetic diversity. We found strong regional differences in the signal of phylogenetic community structure with both overall and regional Net Relatedness Index and Nearest Taxon Index values found to be significantly positive leading to a pattern of phylogenetic clustering. Additionally, we found high taxonomic dissimilarity but low phylogenetic dissimilarity in pairwise community comparisons. These results suggest that recent diversification has played an important role in the assembly of white-sand forests causing geographic neo-endemism patterns at the regional scale. © 2016 The Association for Tropical Biology and Conservation. |
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Ecology and Biodiversity Group, Utrecht University, Utrecht, Netherlands |
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Cited By :3; Export Date: 12 February 2016 |
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EcoFoG @ webmaster @ |
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660 |
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