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De Weirdt, M.; Verbeeck, H.; Maignan, F.; Peylin, P.; Poulter, B.; Bonal, D.; Ciais, P.; Steppe, K. |
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Seasonal leaf dynamics for tropical evergreen forests in a process-based global ecosystem model |
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Journal Article |
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2012 |
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Geoscientific Model Development |
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Geoscientific Model Dev. |
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5 |
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5 |
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1091-1108 |
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The influence of seasonal phenology on canopy photosynthesis in tropical evergreen forests remains poorly understood, and its representation in global ecosystem models is highly simplified, typically with no seasonal variation of canopy leaf properties taken into account. Including seasonal variation in leaf age and photosynthetic capacity could improve the correspondence of global vegetation model outputs with the wet-dry season CO2 patterns measured at flux tower sites in these forests. We introduced a leaf litterfall dynamics scheme in the global terrestrial ecosystem model ORCHIDEE based on seasonal variations in net primary production (NPP), resulting in higher leaf turnover in periods of high productivity. The modifications in the leaf litterfall scheme induce seasonal variation in leaf age distribution and photosynthetic capacity. We evaluated the results of the modification against seasonal patterns of three long-term in-situ leaf litterfall datasets of evergreen tropical forests in Panama, French Guiana and Brazil. In addition, we evaluated the impact of the model improvements on simulated latent heat (LE) and gross primary productivity (GPP) fluxes for the flux tower sites Guyaflux (French Guiana) and TapajÃ3s (km 67, Brazil). The results show that the introduced seasonal leaf litterfall corresponds well with field inventory leaf litter data and times with its seasonality. Although the simulated litterfall improved substantially by the model modifications, the impact on the modelled fluxes remained limited. The seasonal pattern of GPP improved clearly for the Guyaflux site, but no significant improvement was obtained for the TapajÃ3s site. The seasonal pattern of the modelled latent heat fluxes was hardly changed and remained consistent with the observed fluxes. We conclude that we introduced a realistic and generic litterfall dynamics scheme, but that other processes need to be improved in the model to achieve better simulations of GPP seasonal patterns for tropical evergreen forests. © Author(s) 2012. CC Attribution 3.0 License. |
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INRA Nancy, UMR INRA-UHP1137 Ecologie et Ecophysiologie Forestière, 54280 Champenoux, France |
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1991959x (Issn) |
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Export Date: 4 October 2012; Source: Scopus; doi: 10.5194/gmd-5-1091-2012; Language of Original Document: English; Correspondence Address: De Weirdt, M.; Laboratory of Plant Ecology, Department of Applied Ecology and Environmental Biology, Ghent University, Coupure Links 653, 9000 Ghent, Belgium; email: marjolein.deweirdt@ugent.be |
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EcoFoG @ webmaster @ |
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437 |
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Woolfit, M.; Iturbe-Ormaetxe, I.; Brownlie, J.C.; Walker, T.; Riegler, M.; Seleznev, A.; Popovici, J.; Rancès, E.; Wee, B.A.; Pavlides, J.; Sullivan, M.J.; Beatson, S.A.; Lane, A.; Sidhu, M.; McMeniman, C.J.; McGraw, E.A.; O'Neill, S.L. |
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Title |
Genomic evolution of the pathogenic Wolbachia strain, wMelPop |
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Journal Article |
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2013 |
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Genome Biology and Evolution |
Abbreviated Journal |
Genome Biolog. Evol. |
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5 |
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11 |
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2189-2204 |
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Endosymbiont; Evolution; Genomics; Wolbachia |
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Most strains of the widespread endosymbiotic bacterium Wolbachia pipientis are benign or behave as reproductive parasites. The pathogenic strain wMelPop is a striking exception, however: it overreplicates in its insect hosts and causes severe life shortening. The mechanism of this pathogenesis is currently unknown. We have sequenced the genomes of three variants of wMelPop and of the closely related nonpathogenic strain wMelCS. We show that the genomes of wMelCS and wMelPop appear to be identical in the nonrepeat regions of the genome and differ detectably only by the triplication of a 19-kb region that is unlikely to be associated with life shortening, demonstrating that dramatic differences in the host phenotype caused by this endosymbiont may be the result of only minor genetic changes. We also compare the genomes of the original wMelPop strain from Drosophila melanogaster and two sequentialderivatives, wMelPop-CLA and wMelPop-PGYP. To develop wMelPop as a novel biocontrol agent, it was first transinfected into and passaged in mosquito cell lines for approximately 3.5 years, generating wMelPop-CLA. This cell line-passaged strain was then transinfected into Aedesaegypti mosquitoes, creating wMelPop-PGYP,which wassequenced after 4yearsin the insecthost. We observe a rapid burst of genomic changes during cell line passaging, but no further mutations were detected after transinfection into mosquitoes, indicating either that host preadaptation had occurred in cell lines, that cell lines are a more selectively permissive environment than animal hosts, or both. Our results provide valuable data on the rates of genomic and phenotypic change in Wolbachia associated with host shifts over short time scales. © The Author(s) 2013. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. |
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Institute for Molecular Bioscience, University of Queensland, Brisbane, Australia |
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17596653 (Issn) |
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Export Date: 9 February 2014; Source: Scopus; Language of Original Document: English; Correspondence Address: O'Neill, S.L.; School of Biological Sciences, Monash University, Clayton, VIC, Australia; email: scott.oneill@monash.edu; Funding Details: NIH, National Institutes of Health |
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EcoFoG @ webmaster @ |
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527 |
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Aubry-Kientz, M.; Rossi, V.; Boreux, J.-J.; Herault, B. |
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A joint individual-based model coupling growth and mortality reveals that tree vigor is a key component of tropical forest dynamics |
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2015 |
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Ecology and Evolution |
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Ecology and Evolution |
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5 |
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12 |
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2457-2465 |
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Bayesian framework; Estimation method; Individual-based model; Linked models; Mcmc; Paracou; Tropical forest dynamic |
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Tree vigor is often used as a covariate when tree mortality is predicted from tree growth in tropical forest dynamic models, but it is rarely explicitly accounted for in a coherent modeling framework. We quantify tree vigor at the individual tree level, based on the difference between expected and observed growth. The available methods to join nonlinear tree growth and mortality processes are not commonly used by forest ecologists so that we develop an inference methodology based on an MCMC approach, allowing us to sample the parameters of the growth and mortality model according to their posterior distribution using the joint model likelihood. We apply our framework to a set of data on the 20-year dynamics of a forest in Paracou, French Guiana, taking advantage of functional trait-based growth and mortality models already developed independently. Our results showed that growth and mortality are intimately linked and that the vigor estimator is an essential predictor of mortality, highlighting that trees growing more than expected have a far lower probability of dying. Our joint model methodology is sufficiently generic to be used to join two longitudinal and punctual linked processes and thus may be applied to a wide range of growth and mortality models. In the context of global changes, such joint models are urgently needed in tropical forests to analyze, and then predict, the effects of the ongoing changes on the tree dynamics in hyperdiverse tropical forests. © 2015 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. |
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Département des Sciences et Gestion de l'environnement, Université de Liège, Arlon, Belgium |
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Export Date: 3 July 2015 |
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EcoFoG @ webmaster @ |
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608 |
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Piponiot, C.; Sist, P.; Mazzei, L.; Peña-Claros, M.; Putz, F.E.; Rutishauser, E.; Shenkin, A.; Ascarrunz, N.; de Azevedo, C.P.; Baraloto, C.; França, M.; Guedes, M.; Honorio Coronado, E.N.; d'Oliveira, M.V.N.; Ruschel, A.R.; da Silva, K.E.; Doff Sotta, E.; de Souza, C.R.; Vidal, E.; West, T.A.P.; Herault, B. |
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Carbon recovery dynamics following disturbance by selective logging in Amazonian forests |
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Journal Article |
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2016 |
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eLife |
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5 |
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e21394 |
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When 2 Mha of Amazonian forests are disturbed by selective logging each year, more than 90 Tg of carbon (C) is emitted to the atmosphere. Emissions are then counterbalanced by forest regrowth. With an original modelling approach, calibrated on a network of 133 permanent forest plots (175 ha total) across Amazonia, we link regional differences in climate, soil and initial biomass with survivors' and recruits' C fluxes to provide Amazon-wide predictions of post-logging C recovery. We show that net aboveground C recovery over 10 years is higher in the Guiana Shield and in the west (21{plus minus}3 MgC ha-1) than in the south (12{plus minus}3 MgC ha-1) where environmental stress is high (low rainfall, high seasonality). We highlight the key role of survivors in the forest regrowth and elaborate a comprehensive map of post-disturbance C recovery potential in Amazonia. |
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eLife Sciences Publications, Ltd |
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Trumbore, S. |
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2050-084x |
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EcoFoG @ webmaster @ |
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702 |
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Hérault, B.; Piponiot, C. |
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Key drivers of ecosystem recovery after disturbance in a neotropical forest: Long-term lessons from the Paracou experiment, French Guiana |
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2018 |
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Forest Ecosystems |
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Forest Ecosystems |
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5 |
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2 |
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Amazonia; Carbon fluxes; Climate change; Ecological resilience; Ecosystem modeling; Tropical forests |
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Background: Natural disturbance is a fundamental component of the functioning of tropical rainforests let to natural dynamics, with tree mortality the driving force of forest renewal. With ongoing global (i.e. land-use and climate) changes, tropical forests are currently facing deep and rapid modifications in disturbance regimes that may hamper their recovering capacity so that developing robust predictive model able to predict ecosystem resilience and recovery becomes of primary importance for decision-making: (i) Do regenerating forests recover faster than mature forests given the same level of disturbance? (ii) Is the local topography an important predictor of the post-disturbance forest trajectories? (iii) Is the community functional composition, assessed with community weighted-mean functional traits, a good predictor of carbon stock recovery? (iv) How important is the climate stress (seasonal drought and/or soil water saturation) in shaping the recovery trajectory? Methods: Paracou is a large scale forest disturbance experiment set up in 1984 with nine 6.25 ha plots spanning on a large disturbance gradient where 15 to 60% of the initial forest ecosystem biomass were removed. More than 70,000 trees belonging to ca. 700 tree species have then been censused every 2 years up today. Using this unique dataset, we aim at deciphering the endogenous (forest structure and composition) and exogenous (local environment and climate stress) drivers of ecosystem recovery in time. To do so, we disentangle carbon recovery into demographic processes (recruitment, growth, mortality fluxes) and cohorts (recruited trees, survivors). Results: Variations in the pre-disturbance forest structure or in local environment do not shape significantly the ecosystem recovery rates. Variations in the pre-disturbance forest composition and in the post-disturbance climate significantly change the forest recovery trajectory. Pioneer-rich forests have slower recovery rates than assemblages of late-successional species. Soil water saturation during the wet season strongly impedes ecosystem recovery but not seasonal drought. From a sensitivity analysis, we highlight the pre-disturbance forest composition and the post-disturbance climate conditions as the primary factors controlling the recovery trajectory. Conclusions: Highly-disturbed forests and secondary forests because they are composed of a lot of pioneer species will be less able to cope with new disturbance. In the context of increasing tree mortality due to both (i) severe droughts imputable to climate change and (ii) human-induced perturbations, tropical forest management should focus on reducing disturbances by developing Reduced Impact Logging techniques. |
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Université de la Guyane, UMR EcoFoG (AgroParistech, Cirad, CNRS, Inra, Université des Antilles), Campus Agronomique, Kourou, French Guiana, 97310, France |
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Cited By :1; Export Date: 1 September 2018 |
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EcoFoG @ webmaster @ |
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812 |
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Scotti, I.; Calvo-Vialettes, L.; Scotti-Saintagne, C.; Citterio, M.; Degen, B.; Bonal, D. |
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Genetic variation for growth, morphological, and physiological traits in a wild population of the Neotropical shade tolerant rainforest tree Sextonia rubra (Mez) van der Werff (Lauraceae) |
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2010 |
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Tree Genetics & Genomes |
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Tree Genet. Genomes |
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6 |
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2 |
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319-329 |
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Ecophysiological traits; Heritability; Guiana shield; Amazon; Ecological genetics |
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Quantitative genetic diversity is a fundamental component of the interaction between natural populations and their environment. In breeding programmes, quantitative genetic studies on tropical trees have so far focused on fast-growing, light-demanding species, but no information exists on shade-tolerant, slow-growing species. For this study, 27 3-year-old open-pollinated families of the Neotropical shade-tolerant rainforest tree Sextonia rubra were measured in semicontrolled conditions for 20 morphological, growth, and photosynthesis traits; the effect of genetic relatedness, habitat of provenance, and mother tree status on seedling traits was analysed. Nine traits displayed significant genetic effects, while mother tree status and habitat effects were not significant (P > 0.05) for an y trait. Estimated heritability varied between 0.14 and 0.28, with growth-related traits having the highest values. Additive genetic variation correlated positively with nonheritable variation, suggesting that ecological-evolutionary factors increasing or decreasing additive genetic variance may also affect nonheritable variation in the same direction. Our results suggest that quantitative genetic variability should be taken into account in ecological studies on, and in the management of, natural tropical rainforests; further research is needed to investigate genetic x environment interactions, in particular from the point of view of the genetic response of shade-tolerant plant species to variations in light availability. |
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[Scotti, Ivan; Scotti-Saintagne, Caroline; Bonal, Damien] INRA, Unite Mixte Rech Ecol Forets Guyane, Kourou 97387, French Guiana, Email: ivan.scotti@ecofog.gf |
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SPRINGER HEIDELBERG |
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1614-2942 |
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ISI:000274112600015 |
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EcoFoG @ eric.marcon @ |
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68 |
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Fyllas, N.M.; Patino, S.; Baker, T.R.; Nardoto, G.B.; Martinelli, L.A.; Quesada, C.A.; Paiva, R.; Schwarz, M.; Horna, V.; Mercado, L.M.; Santos, A.; Arroyo, L.; Jimenez, E.M.; Luizao, F.J.; Neill, D.A.; Silva, N.; Prieto, A.; Rudas, A.; Silviera, M.; Vieira, I.C.G.; Lopez-Gonzalez, G.; Malhi, Y.; Phillips, O.L.; Lloyd, J. |
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Basin-wide variations in foliar properties of Amazonian forest: phylogeny, soils and climate |
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2009 |
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Biogeosciences |
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Biogeosciences |
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6 |
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11 |
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2677-2708 |
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We analysed 1040 individual trees, located in 62 plots across the Amazon Basin for leaf mass per unit area (M-A), foliar carbon isotopic composition (delta C-13) and leaf level concentrations of C, N, P, Ca, Mg, K and Al. All trees were identified to the species level with the dataset containing 58 families, 236 genera and 508 species, distributed across a wide range of soil types and precipitation regimes. Some foliar characteristics such as M-A, [C], [N] and [Mg] emerge as highly constrained by the taxonomic affiliation of tree species, but with others such as [P], [K], [Ca] and delta C-13 also strongly influenced by site growing conditions. By removing the environmental contribution to trait variation, we find that intrinsic values of most trait pairs coordinate, although different species ( characterised by different trait suites) are found at discrete locations along a common axis of coordination. Species that tend to occupy higher fertility soils are characterised by a lower M-A and have a higher intrinsic [N], [P], [K], [Mg] and delta C-13 than their lower fertility counterparts. Despite this consistency, different scaling patterns were observed between low and high fertility sites. Inter-relationships are thus substantially modified by growth environment. Analysing the environmental component of trait variation, we found soil fertility to be the most important predictor, influencing all leaf nutrient concentrations and delta C-13 and reducing M-A. Mean annual temperature was negatively associated with leaf level [N], [P] and [K] concentrations. Total annual precipitation positively influences M-A, [C] and delta C-13, but with a negative impact on [Mg]. These results provide a first basis for understanding the relationship between the physiological functioning and distribution of tree species across Amazonia. |
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[Fyllas, N. M.; Baker, T. R.; Quesada, C. A.; Lopez-Gonzalez, G.; Phillips, O. L.; Lloyd, J.] Univ Leeds, Sch Geog, Earth & Biosphere Inst, Leeds LS2 9JT, W Yorkshire, England, Email: n.fyllas@leeds.ac.uk |
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COPERNICUS PUBLICATIONS |
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1726-4170 |
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ISI:000272232200025 |
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EcoFoG @ eric.marcon @ |
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92 |
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Patino, S.; Lloyd, J.; Paiva, R.; Baker, T.R.; Quesada, C.A.; Mercado, L.M.; Schmerler, J.; Schwarz, M.; Santos, A.J.B.; Aguilar, A.; Czimczik, C.I.; Gallo, J.; Horna, V.; Hoyos, E.J.; Jimenez, E.M.; Palomino, W.; Peacock, J.; Pena-Cruz, A.; Sarmiento, C.; Sota, A.; Turriago, J.D.; Villanueva, B.; Vitzthum, P.; Alvarez, E.; Arroyo, L.; Baraloto, C.; Bonal, D.; Chave, J.; Costa, A.C.L.; Herrera, R.; Higuchi, N.; Killeen, T.; Leal, E.; Luizao, F.; Meir, P.; Monteagudo, A.; Neil, D.; Nunez-Vargas, P.; Penuela, M.C.; Pitman, N.; Priante, N.; Prieto, A.; Panfil, S.N.; Rudas, A.; Salomao, R.; Silva, N.; Silveira, M.; deAlmeida, S.S.; Torres-Lezama, A.; Vasquez-Martinez, R.; Vieira, I.; Malhi, Y.; Phillips, O.L. |
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Branch xylem density variations across the Amazon Basin |
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2009 |
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Biogeosciences |
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Biogeosciences |
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6 |
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4 |
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545-568 |
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Xylem density is a physical property of wood that varies between individuals, species and environments. It reflects the physiological strategies of trees that lead to growth, survival and reproduction. Measurements of branch xylem density, rho(x), were made for 1653 trees representing 598 species, sampled from 87 sites across the Amazon basin. Measured values ranged from 218 kg m(-3) for a Cordia sagotii (Boraginaceae) from Mountagne de Tortue, French Guiana to 1130 kg m(-3) for an Aiouea sp. (Lauraceae) from Caxiuana, Central Para, Brazil. Analysis of variance showed significant differences in average rho(x) across regions and sampled plots as well as significant differences between families, genera and species. A partitioning of the total variance in the dataset showed that species identity (family, genera and species) accounted for 33% with environment (geographic location and plot) accounting for an additional 26%; the remaining “residual” variance accounted for 41% of the total variance. Variations in plot means, were, however, not only accountable by differences in species composition because xylem density of the most widely distributed species in our dataset varied systematically from plot to plot. Thus, as well as having a genetic component, branch xylem density is a plastic trait that, for any given species, varies according to where the tree is growing in a predictable manner. Within the analysed taxa, exceptions to this general rule seem to be pioneer species belonging for example to the Urticaceae whose branch xylem density is more constrained than most species sampled in this study. These patterns of variation of branch xylem density across Amazonia suggest a large functional diversity amongst Amazonian trees which is not well understood. |
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[Patino, S.; Aguilar, A.; Jimenez, E. M.; Vitzthum, P.; Penuela, M. C.] Univ Nacl Colombia, Inst Amazonico Invest Imani, Grp Ecol Ecosistemas Terrestres Trop, Leticia, Amazonas, Colombia, Email: sanpatiga@gmail.com |
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COPERNICUS PUBLICATIONS |
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ISI:000265743200004 |
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EcoFoG @ eric.marcon @ |
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115 |
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Lebrini, M.; Robert, F.; Roos, C. |
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Alkaloids Extract from Palicourea guianensis Plant as Corrosion Inhibitor for C38 Steel in 1 M Hydrochloric Acid Medium |
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Journal Article |
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2011 |
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International Journal of Electrochemical Science |
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Int. J. Electrochem. Sci. |
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6 |
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3 |
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847-859 |
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Keywords |
Palicourea guianensis; corrosion inhibitors; C38 steel; acidic media; adsorption |
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Abstract |
Corrosion inhibition effect of alkaloids extract from Palicourea guianensis plant (AEPG) on C38 tell in 1 M HCl medium has been investigated by potentiodynamic polarization and electrochemical impedance spectroscopy. The polarization studies that AEPG acts as mixed-type inhibitor. The electrochemical impedance spectroscopy showed that the charge transfer resistance increases and the double layer capacitance decreases on increasing plant extract concentration. The inhibition efficiency of the extract obtained from impedance and polarization measurements was in a good agreement and was found to increase with increasing concentration of the extract. Inhibition efficiency of 89% was achieved with 100 mg L-1 of AEPG at 25 degrees C. The obtained results showed that, the Palicourea guianensis extract could serve as an effective inhibitor for the corrosion of steel in acid media. The adsorption of AEPG obeys the Langmuir adsorption isotherm. |
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Address |
[Lebrini, M.; Robert, F.; Roos, C.] UAG UMR ECOFOG, Lab Mat & Mol Milieu Amazonien, Cayenne 97337, French Guiana, Email: florent.robert@guyane.univ-ag.fr |
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Electrochemical Science Group |
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1452-3981 |
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ISI:000287820500026 |
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EcoFoG @ webmaster @ |
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298 |
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Author |
Dejean, A.; Corbara, B.; Leroy, C.; Delabie, J.H.C.; Rossi, V.; Cereghino, R. |
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Title |
Inherited Biotic Protection in a Neotropical Pioneer Plant |
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Journal Article |
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2011 |
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PLoS One |
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PLoS One |
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6 |
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3 |
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e18071 |
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Chelonanthus alatus is a bat-pollinated, pioneer Gentianaceae that clusters in patches where still-standing, dried-out stems are interspersed among live individuals. Flowers bear circum-floral nectaries (CFNs) that are attractive to ants, and seed dispersal is both barochorous and anemochorous. Although, in this study, live individuals never sheltered ant colonies, dried-out hollow stems – that can remain standing for 2 years – did. Workers from species nesting in dried-out stems as well as from ground-nesting species exploited the CFNs of live C. alatus individuals in the same patches during the daytime, but were absent at night (when bat pollination occurs) on 60.5% of the plants. By visiting the CFNs, the ants indirectly protect the flowers – but not the plant foliage – from herbivorous insects. We show that this protection is provided mostly by species nesting in dried-out stems, predominantly Pseudomyrmex gracilis. That dried-out stems remain standing for years and are regularly replaced results in an opportunistic, but stable association where colonies are sheltered by one generation of dead C. alatus while the live individuals nearby, belonging to the next generation, provide them with nectar; in turn, the ants protect their flowers from herbivores. We suggest that the investment in wood by C. alatus individuals permitting still-standing, dried-out stems to shelter ant colonies constitutes an extended phenotype because foraging workers protect the flowers of live individuals in the same patch. Also, through this process these dried-out stems indirectly favor the reproduction (and so the fitness) of the next generation including both their own offspring and that of their siblings, all adding up to a potential case of inclusive fitness in plants. |
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[Dejean, Alain; Leroy, Celine] CNRS, Ecol Forets Guyane UMR CNRS 8172, Kourou, France, Email: alain.dejean@wanadoo.fr |
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Public Library Science |
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1932-6203 |
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ISI:000289057200023 |
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EcoFoG @ webmaster @ |
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306 |
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