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Epron, D.; Bosc, A.; Bonal, D.; Freycon, V. |
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Title |
Spatial variation of soil respiration across a topographic gradient in a tropical rain forest in French Guiana |
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Journal Article |
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Year |
2006 |
Publication |
Journal of Tropical Ecology |
Abbreviated Journal |
J. Trop. Ecol. |
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Volume  |
22 |
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Pages |
565-574 |
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Keywords |
acrisol; carbon balance; carbon flux; gleysol; root biomass |
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Abstract |
The objective of this study was to analyse the factors explaining spatial variation in soil respiration over topographic transects in a tropical rain forest of French Guiana. The soil of 30 plots along six transects was characterized. The appearance of the 'dry to the touch' character at a depth of less than 1.2 m was used to discriminate soils exhibiting vertical drainage from soils exhibiting superficial lateral drainage and along with colour and texture, to define five classes from well-drained to strongly hydromorphic soils. Spatial variation in soil respiration was closely related to topographic position and soil type. Increasing soil water content and bulk density and decreasing root biomass and soil carbon content explained most of the decrease in soil respiration from the plateaux (vertically drained hypoferralic acrisol) to the bottomlands (haplic gleysol). These results will help to stratify further field experiments and to identify the underlying determinants of spatial variation in soil respiration to develop mechanistic models of soil respiration. |
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Univ Nancy 1, UMR 1137, INRA, UHP Ecol & Ecophysiol Forestieres,Fac Sci, F-54506 Vandoeuvre Les Nancy, France, Email: Daniel.Epron@scbiol.uhp-nancy.fr |
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CAMBRIDGE UNIV PRESS |
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0266-4674 |
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ISI:000239975200008 |
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EcoFoG @ eric.marcon @ |
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179 |
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Author |
Millet, J.; Pascal, J.P.; Kiet, L.C. |
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Title |
Effects of Disturbance Over 60 Years on a Lowland Forest in Southern Vietnam |
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Journal Article |
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Year |
2010 |
Publication |
Journal of Tropical Forest Science |
Abbreviated Journal |
J. Trop. For. Sci. |
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22 |
Issue |
3 |
Pages |
237-246 |
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Keywords |
Lowland tropical forest; disturbance impact; floristic composition; forest structure; Tan Phu forest |
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MILLET J, PASCAL JP & MET LC. 2010. Effects of disturbance over 60 years on a lowland forest in southern Vietnam. Tropical lowland forests are some of the most threatened in the world and this is particularly the case in Vietnam. This study aimed to identify changes in species composition and forest structure in the Tan Phu lowland forest resulting from disturbance over a 60 year period. Analysis of forest composition and structure rely on data from 25 plots of 0.5-ha size established in a lowland secondary forest. The five forest stands described differed greatly from the three forest stand types described in 1943. Some long-lived shade-tolerant species had been replaced by pioneer species, such as Cratoxylon formosum and Shorea roxburghii. In addition to altering composition, forest disturbances had resulted in large changes in forest structure. While in the past, forest stands had a large number of exploitable trees, current forest stands have few trees in the diameter class > 50 cm and sometimes no trees in the diameter class > 80 cm. This paper provides notable results on forest tree ecology, forest dynamics and on the state of secondary forests in Vietnam. This is particularly important as future goods and services will increasingly have to come from such forests. |
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[Millet, J.] Univ Lyon 1, F-69622 Villeurbanne, France, Email: jerome.millet@ird.if |
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FOREST RESEARCH INST MALAYSIA |
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0128-1283 |
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ISI:000280653200003 |
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EcoFoG @ webmaster @ |
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283 |
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Niamké, F.B.; Amusant, N.; Kadio, A.A.; Thevenon, M.-F.; Nourissier, S.; Adima, A.A.; Jay-Allemand, C.; Chaix, G. |
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Title |
Rapid prediction of phenolic compounds as chemical markers for the natural durability of teak (Tectona grandis Linn f.) heartwood by near infrared spectroscopy |
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Journal Article |
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Year |
2014 |
Publication |
Journal of Near Infrared Spectroscopy |
Abbreviated Journal |
J. Near Infrared Spectrosc. |
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Volume |
22 |
Issue |
1 |
Pages |
35-43 |
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Keywords |
Heartwood; Hplc; Natural durability; NIR spectroscopy; Phenolic; Prediction; Quinone; Tectona grandis |
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Near infrared (NIR) spectroscopy provides rapid and non-destructive analysis of wood properties and composition. In this study, we aimed to use NIR measurement for the prediction of teak phenolic compounds, which are chemical markers for natural durability of wood. Twenty-seven teak trees from two geographical zones (Malaysia and Ivory Coast) were used. On ground heartwood samples, the content of total phenolics and individual quinones (tectoquinone, 2-(hydroxymethyl)anthraquinone, 2-anthraquinone carboxylic acid, 1,4-naphthoquinoneand 4c,5c-dihydroxy-epiisocatalponol) were determined using high performance liquid chromatography (HPLC). Partial least squares (PLS) regression with NIR spectra on the same samples and phenolic data was used to build NIR models for phenolic contents. The PLS models for the total predicted phenolics and three quinone contents (tectoquinone, 2-(hydroxymethyl) anthraquinone, and 4¢,5¢-dihydroxy-epiisocatalponol) showed a good ratio of performance to deviation (RPD ≥ 2.5), strong coefficients of determination (r2 ≥ 0.8) and the prediction errors were consistent with the reference method. These results demonstrate that NIR spectroscopy can be reliable for the evaluation of total phenolics and individual quinones in teak heartwood wood meal. NIR spectroscopy is a promising technique for rapidly providing information on the quinone contents in teak wood and indirectly for knowing its natural durability. This finding leads to a precise, non-destructive tool for teak wood quality evaluation. © IM Publications LLP 2014. |
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CIRAD-UMR AGAP, Department of Forest Science, ESALQ / University of São Paulo, Avenue Pàdua Dias 11, CEP 13418-900, Piracicaba-SP, Brazil |
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N I R Publications |
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17516552 (Issn) |
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Export Date: 20 May 2014; Source: Scopus; Language of Original Document: English; Correspondence Address: Niamké, F.B.; LAPISEN, Groupe de Recherche en Chimie des Eaux et des Substances Naturelles, Institut National Polytechnique Houphouët Boigny, BP 1313, Yamoussoukro, Cote d'Ivoire |
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EcoFoG @ webmaster @ |
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542 |
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Dejean, A.; Corbara, B.; Céréghino, R.; Leponce, M.; Roux, O.; Rossi, V.; Delabie, J.H.C.; Compin, A. |
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Title |
Traits allowing some ant species to nest syntopically with the fire ant Solenopsis saevissima in its native range |
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Journal Article |
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Year |
2015 |
Publication |
Insect Science |
Abbreviated Journal |
Insect Science |
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Volume |
22 |
Issue |
2 |
Pages |
289-294 |
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Keywords |
Ant community; Fire ants; Invasive species; Solenopsis saevissima; Species coexistence; Supercoloniality |
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Abstract |
Supercolonies of the red fire ant Solenopsis saevissima (Smith) develop in disturbed environments and likely alter the ant community in the native range of the species. For example, in French Guiana only 8 ant species were repeatedly noted as nesting in close vicinity to its mounds. Here, we verified if a shared set of biological, ecological, and behavioral traits might explain how these 8 species are able to nest in the presence of S. saevissima. We did not find this to be the case. We did find, however, that all of them are able to live in disturbed habitats. It is likely that over the course of evolution each of these species acquired the capacity to live syntopically with S. saevissima through its own set of traits, where colony size (4 species develop large colonies), cuticular compounds which do not trigger aggressiveness (6 species) and submissive behaviors (4 species) complement each other. © 2013 Institute of Zoology, Chinese Academy of Sciences. |
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U.P.A. Laboratório de Mirmecologia, Convênio UESC/CEPLAC, C.P. 7Itabuna, Bahia, Brazil |
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Export Date: 9 April 2015 |
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EcoFoG @ webmaster @ |
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594 |
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Do, N.A.; Dias, D.; Zhang, Z.; Huang, X.; Nguyen, T.T.; Pham, V.V.; Nait-Rabah, O. |
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Title |
Study on the behavior of squared and sub-rectangular tunnels using the Hyperstatic Reaction Method |
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Journal Article |
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Year |
2020 |
Publication |
Transportation Geotechnics |
Abbreviated Journal |
Transp. Geotech. |
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22 |
Issue |
100321 |
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Keywords |
Finite element method; Lining; Squared shape; Sub-rectangular shape; Tunnel; efficiency measurement; finite element method; numerical model; transportation development; transportation planning; tunnel design; tunnel lining |
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Saint-Petersburg Mining University, Russian Federation |
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Elsevier Ltd |
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22143912 (Issn) |
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EcoFoG @ webmaster @ |
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915 |
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Author |
Legeay, J.; Husson, C.; Boudier, B.; Louisanna, E.; Baraloto, C.; Schimann, H.; Marcais, B.; Buée, M. |
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Title |
Surprising low diversity of the plant pathogen Phytophthora in Amazonian forests |
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Journal Article |
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Year |
2020 |
Publication |
Environmental Microbiology |
Abbreviated Journal |
Environ. Microbiol. |
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22 |
Issue |
12 |
Pages |
5019-5032 |
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The genus Phytophthora represents a group of plant pathogens with broad global distribution. The majority of them cause the collar and root-rot of diverse plant species. Little is known about Phytophthora communities in forest ecosystems, especially in the Neotropical forests where natural enemies could maintain the huge plant diversity via negative density dependence. We characterized the diversity of soil-borne Phytophthora communities in the North French Guiana rainforest and investigated how they are structured by host identity and environmental factors. In this little-explored habitat, 250 soil cores were sampled from 10 plots hosting 10 different plant families across three forest environments (Terra Firme, Seasonally Flooded and White Sand). Phytophthora diversity was studied using a baiting approach and metabarcoding (High-Throughput Sequencing) on environmental DNA extracted from both soil samples and baiting-leaves. These three approaches revealed very similar communities, characterized by an unexpected low diversity of Phytophthora species, with the dominance of two cryptic species close to Phytophthora heveae. As expected, the Phytophthora community composition of the French Guiana rainforest was significantly impacted by the host plant family and environment. However, these plant pathogen communities are very small and are dominated by generalist species, questioning their potential roles as drivers of plant diversity in these Amazonian forests. © 2020 Society for Applied Microbiology and John Wiley & Sons Ltd. |
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International Center for Tropical Botany, Department of Biological Sciences, Florida International University, Miami, FL 33199, United States |
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Blackwell Publishing Ltd |
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14622912 (Issn) |
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EcoFoG @ webmaster @ |
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940 |
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Leroy, C.; Gueroult, M.; Wahyuni, N.S.; Escoute, J.; Cereghino, R.; Sabatier, S.; Auclair, D. |
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Morphogenetic trends in the morphological, optical and biochemical features of phyllodes in Acacia mangium Willd (Mimosaceae) |
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Journal Article |
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Year |
2009 |
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Trees-Structure and Function |
Abbreviated Journal |
Trees-Struct. Funct. |
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23 |
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1 |
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37-49 |
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Chlorophyll; Phyllode morphology; Phyllode anatomy; Nitrogen; Optical properties; Plant architecture |
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Endogenous variations in the annual growth of trees suggest that similar trends would occur in phyllodes. In comparison to leaves, the characteristics of phyllodes are less well known, hence this study examines the effects of architectural position and age of tree on the phyllodes of Acacia mangium. Phyllodes were investigated on 1-, 2-, and 3-year-old trees from three axis positions within the crown. We focused on the morphological, optical and biochemical traits of the phyllodes. The increase in phyllode area and lamina thickness is more pronounced in the older trees. Leaf mass area (LMA), stomatal density, nitrogen and chlorophyll content increase with tree age. The values of these characteristics decrease from the main stem to the lower branches for the older trees. Phyllode light absorptance increased with tree age whereas reflectance was higher for the upper position compared to the lower position within the crown. Carotenoid content and chlorophyll a/b ratio were higher for the younger phyllodes of younger trees. Increasing tree size induced modifications in the phyllode characteristics which are influenced by both morphogenetic and light gradients within the crown. This study demonstrated pronounced changes in terms of morphological and functional indicators of photosynthetic capacity in relation to phyllode position within the crown and to tree age. These morphogenetic effects on the phyllode characteristics should be taken into account in studies on phenotypic plasticity. |
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[Sabatier, Sylvie] CIRAD, UMR AMAP BotAnique & BioinforMat Architecture, F-34398 Montpellier 5, France, Email: sylvie-annabel.sabatier@cirad.fr |
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SPRINGER |
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0931-1890 |
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ISI:000262538700005 |
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EcoFoG @ eric.marcon @ |
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206 |
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Bosc, A.; De Grandcourt, A.; Loustau, D. |
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Variability of stem and branch maintenance respiration in a Pinus pinaster tree |
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Journal Article |
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2003 |
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Tree Physiology |
Abbreviated Journal |
Tree Physiol. |
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23 |
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4 |
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227-236 |
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model; nitrogen; phloem; sapwood; temperature |
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The relationship between maintenance respiration (R.) of woody organs and their structural characteristics was explored in adult Pinus pinaster Ait. trees. We measured R-m on 75 stem and branch segments of different ages (from 3 to 24 years) and diameters (from 1 to 35 cm). The temperature response of R-m was derived from field measurements based on a classical exponential function with Q(10) = 2.13. Relationships between R-m and the dimensions of the woody organs were analyzed under controlled conditions in the laboratory. The surface area of a woody organ was a better predictor of R-m than volume, but surface area failed to account for the observed within-tree variability of R-m among stems, branches and twigs. Two simple models were proposed to predict the variability of R-m at 15 degreesC in an adult tree. Model 1, a linear function model based on the dry mass and nitrogen concentration of sapwood and phloem tissues, explained most of the variability of R-m in branches and stems (R-2 = 0.97). We concluded that the respective contributions of the phloem and sapwood depend on the location and diameter of the woody organ. Model 2, a power-law function model based on the length, diameter and age of the sample, explained the same variance of R-m as Model 1 and is appropriate for scaling R-m to the stand level. Models 1 and 2 appear to explain a larger variability of R-m than models based on stem area or sapwood mass. |
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INRA, F-33612 Cestas, France, Email: alexandre.bosc@pierroton.inra.fr |
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HERON PUBLISHING |
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0829-318X |
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ISI:000181841200002 |
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EcoFoG @ eric.marcon @ |
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246 |
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Öpik, M.; Zobel, M.; Cantero, J.J.; Davison, J.; Facelli, J.M.; Hiiesalu, I.; Jairus, T.; Kalwij, J.M.; Koorem, K.; Leal, M.E.; Liira, J.; Metsis, M.; Neshataeva, V.; Paal, J.; Phosri, C.; Põlme, S.; Reier, Ü.; Saks, Ü.; Schimann, H.; Thiéry, O.; Vasar, M.; Moora, M. |
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Global sampling of plant roots expands the described molecular diversity of arbuscular mycorrhizal fungi |
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Journal Article |
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2013 |
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Mycorrhiza |
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23 |
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5 |
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411-430 |
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454-sequencing; Biogeography; Database; Diversity; Fungal macroecology; Glomeromycota |
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We aimed to enhance understanding of the molecular diversity of arbuscular mycorrhizal fungi (AMF) by building a new global dataset targeting previously unstudied geographical areas. In total, we sampled 96 plant species from 25 sites that encompassed all continents except Antarctica. AMF in plant roots were detected by sequencing the nuclear SSU rRNA gene fragment using either cloning followed by Sanger sequencing or 454-sequencing. A total of 204 AMF phylogroups (virtual taxa, VT) were recorded, increasing the described number of Glomeromycota VT from 308 to 341 globally. Novel VT were detected from 21 sites; three novel but nevertheless widespread VT (Glomus spp. MO-G52, MO-G53, MO-G57) were recorded from six continents. The largest increases in regional VT number were recorded in previously little-studied Oceania and in the boreal and polar climatic zones – this study providing the first molecular data from the latter. Ordination revealed differences in AM fungal communities between different continents and climatic zones, suggesting that both biogeographic history and environmental conditions underlie the global variation of those communities. Our results show that a considerable proportion of Glomeromycota diversity has been recorded in many regions, though further large increases in richness can be expected in remaining unstudied areas. © 2013 Springer-Verlag Berlin Heidelberg. |
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INRA-Joint Research Unit Ecology of Guiana Forests (Ecofog), campus agronomique, BP 709, 97387 Kourou cedex, French Guiana |
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Export Date: 25 June 2013; Source: Scopus |
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EcoFoG @ webmaster @ |
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493 |
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Csilléry, K.; Lalague, H.; Vendramin, G.G.; González-Martínez, S.C.; Fady, B.; Oddou-Muratorio, S. |
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Detecting short spatial scale local adaptation and epistatic selection in climate-related candidate genes in European beech (Fagus sylvatica) populations |
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Journal Article |
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2014 |
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Molecular Ecology |
Abbreviated Journal |
Molecular Ecology |
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23 |
Issue |
19 |
Pages |
4696-4708 |
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abiotic stress; budburst phenology; FST outlier; gene network; haplotype; Ohta's test; variance components of linkage disequilibrium |
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Detecting signatures of selection in tree populations threatened by climate change is currently a major research priority. Here, we investigated the signature of local adaptation over a short spatial scale using 96 European beech (Fagus sylvatica L.) individuals originating from two pairs of populations on the northern and southern slopes of Mont Ventoux (south-eastern France). We performed both single and multilocus analysis of selection based on 53 climate-related candidate genes containing 546 SNPs. FST outlier methods at the SNP level revealed a weak signal of selection, with three marginally significant outliers in the northern populations. At the gene level, considering haplotypes as alleles, two additional marginally significant outliers were detected, one on each slope. To account for the uncertainty of haplotype inference, we averaged the Bayes factors over many possible phase reconstructions. Epistatic selection offers a realistic multilocus model of selection in natural populations. Here, we used a test suggested by Ohta based on the decomposition of the variance of linkage disequilibrium. Overall populations, 0.23% of the SNP pairs (haplotypes) showed evidence of epistatic selection, with nearly 80% of them being within genes. One of the between gene epistatic selection signals arose between an FST outlier and a nonsynonymous mutation in a drought response gene. Additionally, we identified haplotypes containing selectively advantageous allele combinations which were unique to high or low elevations and northern or southern populations. Several haplotypes contained nonsynonymous mutations situated in genes with known functional importance for adaptation to climatic factors. |
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CIFOR-INIA, Forest Research Centre, Carretera de La Coruña km 7.5Madrid 28040, Spain |
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Export Date: 13 January 2015 |
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EcoFoG @ webmaster @ |
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579 |
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