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Lachenaud, P.; Rossi, V.; Thevenin, J.-M.; Doaré, F. |
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Title |
The “Guiana” genetic group: A new source of resistance to cacao (Theobroma cacao L.) black pod rot caused by Phytophthora capsici |
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Journal Article |
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Year |
2015 |
Publication |
Crop Protection |
Abbreviated Journal |
Crop Prot. |
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67 |
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91-95 |
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Black pod; Cocoa; French guiana; Phytophthora capsici; Resistance; Phytophthora capsici; Theobroma cacao |
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Black pod rot, caused by Stramenopiles of the genus Phytophthora, leads to serious production losses in all cocoa growing zones. In order to reduce the impact of these pests, preference is given to genetic control using resistant varieties, and sources of resistance are actively being sought, particularly in wild cacao trees. Surveys were undertaken in the natural cacao tree populations of south-eastern French Guiana between 1985 and 1995 and an abundant amount of plant material belonging to a particular genetic group, the “Guiana” group, was collected. A great deal of work has shown the merits of this genetic group as a source of resistance to Phytophthora palmivora and megakarya. We describe here the results of a global study to assess the resistance of the 186 clones in the “Guiana” group “core collection” to a Guianese strain of Phytophthora capsici (strain Reg 2-6). This study, which used an efficient methodology (fifteen series of tests on leaf discs and a statistical test adapted to the ordinal nature of the basic data), showed that the “Guiana” genetic group is a major source of resistance to P.capsici. Strain Reg 2-6 proves to be particularly virulent, as the Scavina 6 control, an international reference for resistance to Phytophthora, is not resistant to it. However, 24 clones of the “Guiana” group are, and 92 have proved to be more resistant than Scavina 6, thereby showing the interest of the group in genetically controlling P.capsici.Thus, of the clones in the Guiana group that are more resistant to P.capsici than Scavina 6, some, which are also resistant to P.palmivora and/or Phytophthora megakarya, and also displaying some other notable qualities, could be incorporated into cocoa genetic improvement programmes in countries where P.capsici is rife on cacao trees. |
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CIRAD, UPR BSEF, BP 2572Yaoundé, Cameroon |
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Elsevier Ltd |
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02612194 (Issn) |
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Export Date: 12 November 2014; Coden: Crptd; Correspondence Address: Lachenaud, P.; CIRAD, UPR 106, BP 701, France |
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EcoFoG @ webmaster @ |
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565 |
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Csilléry, K.; Lalague, H.; Vendramin, G.G.; González-Martínez, S.C.; Fady, B.; Oddou-Muratorio, S. |
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Title |
Detecting short spatial scale local adaptation and epistatic selection in climate-related candidate genes in European beech (Fagus sylvatica) populations |
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Journal Article |
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Year |
2014 |
Publication |
Molecular Ecology |
Abbreviated Journal |
Molecular Ecology |
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23 |
Issue |
19 |
Pages |
4696-4708 |
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abiotic stress; budburst phenology; FST outlier; gene network; haplotype; Ohta's test; variance components of linkage disequilibrium |
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Detecting signatures of selection in tree populations threatened by climate change is currently a major research priority. Here, we investigated the signature of local adaptation over a short spatial scale using 96 European beech (Fagus sylvatica L.) individuals originating from two pairs of populations on the northern and southern slopes of Mont Ventoux (south-eastern France). We performed both single and multilocus analysis of selection based on 53 climate-related candidate genes containing 546 SNPs. FST outlier methods at the SNP level revealed a weak signal of selection, with three marginally significant outliers in the northern populations. At the gene level, considering haplotypes as alleles, two additional marginally significant outliers were detected, one on each slope. To account for the uncertainty of haplotype inference, we averaged the Bayes factors over many possible phase reconstructions. Epistatic selection offers a realistic multilocus model of selection in natural populations. Here, we used a test suggested by Ohta based on the decomposition of the variance of linkage disequilibrium. Overall populations, 0.23% of the SNP pairs (haplotypes) showed evidence of epistatic selection, with nearly 80% of them being within genes. One of the between gene epistatic selection signals arose between an FST outlier and a nonsynonymous mutation in a drought response gene. Additionally, we identified haplotypes containing selectively advantageous allele combinations which were unique to high or low elevations and northern or southern populations. Several haplotypes contained nonsynonymous mutations situated in genes with known functional importance for adaptation to climatic factors. |
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CIFOR-INIA, Forest Research Centre, Carretera de La Coruña km 7.5Madrid 28040, Spain |
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Export Date: 13 January 2015 |
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EcoFoG @ webmaster @ |
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579 |
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Dejean, A.; Corbara, B. |
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Title |
Reactions by army ant workers to nestmates having had contact with sympatric ant species |
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Journal Article |
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Year |
2014 |
Publication |
Comptes Rendus Biologies |
Abbreviated Journal |
C. R. Biol. |
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337 |
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11 |
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642-645 |
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Army ants Antipredation Colony-mate recognition Eciton Transferring cuticular compounds; Eciton; Formicidae |
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It was recently shown that Pheidole megacephala colonies (an invasive species originating from Africa) counterattack when raided by the army ant, Eciton burchellii. The subsequent contact permits Pheidole cuticular compounds (that constitute the “colony odour”) to be transferred onto the raiding Eciton, which are then not recognised by their colony-mates and killed. Using a simple method for transferring cuticular compounds, we tested if this phenomenon occurs for Neotropical ants. Eciton workers rubbed with ants from four sympatric species were released among their colony-mates. Individuals rubbed with Solenopsis saevissima or Camponotus blandus workers were attacked, but not those rubbed with Atta sexdens, Pheidole fallax or with colony-mates (control lot). So, the chemicals of certain sympatric ant species, but not others, trigger intra-colonial aggressiveness in Eciton. We conclude that prey-ant chemicals might have played a role in the evolution of army ant predatory behaviour, likely influencing prey specialization in certain cases. |
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Clermont Université, Université Blaise-Pascal, LMGE, BP 10448Clermont-Ferrand, France |
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Elsevier Masson SAS |
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16310691 (Issn) |
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Export Date: 12 November 2014; Coden: Crboc; Correspondence Address: Dejean, A.; CNRS, É Cologie des Forêts de Guyane, UMR-CNRS 8172, BP 316, France |
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EcoFoG @ webmaster @ |
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566 |
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Hamadi, A.; Borderies, P.; Albinet, C.; Koleck, T.; Villard, L.; Ho Tong Minh, D.; Le Toan, T.; Burban, B. |
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Title |
Temporal coherence of tropical forests at P-band: Dry and rainy seasons |
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Journal Article |
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2015 |
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IEEE Geoscience and Remote Sensing Letters |
Abbreviated Journal |
IEEE Geosci. Remote Sens. Lett. |
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12 |
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3 |
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557-561 |
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Biomass mission; forest scattering; ground-based experiment; P-band; range impulse response; temporal coherence |
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In this letter, the temporal coherence of tropical forest scattering at P-band is addressed by means of a ground-based experiment. The study is based on the TropiScat campaign in French Guiana, designed to support the Biomass mission, which will be the ESA 7th Earth Explorer mission. For Biomass, temporal coherence is a crucial parameter for coherent processing of polarimetric synthetic aperture radar (SAR) interferometry and SAR tomography in repeat-pass acquisitions. During the experiment, data were continuously collected for six months during both the rainy and dry seasons. For the rain-free days in both seasons, the coherence exhibits a daily cycle showing a high decorrelation during daytime, which is likely due to motion in the canopy. Up to a 20-day baseline, the coherence is much higher in the dry season than in the rainy season (> 0.8). From 20 to 40 days, it presents the same order of magnitude in both seasons [0.6, 0.7]. For larger temporal baselines, it becomes lower in the dry season. The results can be used to assess the long-term coherence of repeat-pass observations over a tropical forest. However, an extension of this study to several years and over other forest spots would be necessary to draw more general conclusions. |
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EcoFogKourou, France |
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Institute of Electrical and Electronics Engineers Inc. |
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1545598x (Issn) |
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Export Date: 21 October 2014; Correspondence Address: Hamadi, A.; Centre d'Etudes Spatiales de la BiosphèreFrance; Funding Details: ESA, European Space Agency |
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EcoFoG @ webmaster @ |
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563 |
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Flores, O.; Herault, B.; Delcamp, M.; Garnier, É.; Gourlet-Fleury, S. |
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Functional traits help predict post-disturbance demography of tropical trees |
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Journal Article |
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2014 |
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PLoS ONE |
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PLoS ONE |
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9 |
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9 |
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e105022 |
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How tropical tree species respond to disturbance is a central issue of forest ecology, conservation and resource management. We define a hierarchical model to investigate how functional traits measured in control plots relate to the population change rate and to demographic rates for recruitment and mortality after disturbance by logging operations. Population change and demographic rates were quantified on a 12-year period after disturbance and related to seven functional traits measured in control plots. The model was calibrated using a Bayesian Network approach on 53 species surveyed in permanent forest plots (37.5 ha) at Paracou in French Guiana. The network analysis allowed us to highlight both direct and indirect relationships among predictive variables. Overall, 89% of interspecific variability in the population change rate after disturbance were explained by the two demographic rates, the recruitment rate being the most explicative variable. Three direct drivers explained 45% of the variability in recruitment rates, including leaf phosphorus concentration, with a positive effect, and seed size and wood density with negative effects. Mortality rates were explained by interspecific variability in maximum diameter only (25%). Wood density, leaf nitrogen concentration, maximum diameter and seed size were not explained by variables in the analysis and thus appear as independent drivers of post-disturbance demography. Relationships between functional traits and demographic parameters were consistent with results found in undisturbed forests. Functional traits measured in control conditions can thus help predict the fate of tropical tree species after disturbance. Indirect relationships also suggest how different processes interact to mediate species demographic response. |
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Centre d'Écologie Fonctionnelle et Évolutive, CNRS – UMR 5175Montpellier, France |
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Public Library of Science |
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19326203 (Issn) |
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Export Date: 7 October 2014; Coden: Polnc; Correspondence Address: Flores, O.; Cirad – Université de la Réunion, UMR PVBMT, 7 chemin de l'IRAT, France |
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EcoFoG @ webmaster @ |
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562 |
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Amusant, N.; Nigg, M.; Thibaut, B.; Beauchene, J. |
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Diversity of decay resistance strategies of durable tropical woods species: Bocoa prouacencsis Aublet, Vouacapoua americana Aublet, Inga alba (Sw.) Wild |
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Journal Article |
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2014 |
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International Biodeterioration & Biodegradation |
Abbreviated Journal |
Int. Biodeterior. Biodegrad. |
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94 |
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103-108 |
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Decay resistance; Density; Heartwood; Sapwood; Tropical wood; Wood extractive; Decay resistance; Heartwood; Sapwood; Tropical wood; Wood extractives; Density (specific gravity); Andira aubletii; Bocoa; Inga |
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The study of decay resistance in wood is of interest for wood end-users but also for the global carbon balance since wood biodegradation is a key driver of forest ecosystem functioning through its impacts on carbon and nutrient cycling. We studied the density and wood extractive contents in order to understand decay resistance against soil microflora after 90 days exposure of sapwood and heartwood from three Neotropical wood species known for their decay resistance: Bocoa prouacensis, Vouacapoua americana, Inga alba. Decay resistance was correlated with density more than wood extractive content. The results highlighted different decay resistance strategies. In B. prouacensis, both sapwood and heartwood were highly resistant due to the high density and high content of antifungal wood extractives. In V. americana heartwood, decay resistance was due to the high synergistic-acting wood extractive content. Conversely, with the least dense wood species I. alba, we found that decay resistance was due to the antifungal wood extractives synthesized early in the sapwood. In conclusion, we showed that the three wood species with the same level of heartwood decay resistance performance had different decay resistance strategies according to the anatomic and defensive wood traits. |
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CNRS, CCo Pl E. Bataillon, Laboratoire de Me´canique et Ge´nie Civile, Universite´ de Montpellier 2Montpellier Cedex 5, France |
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Elsevier Ltd |
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09648305 (Issn) |
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Export Date: 1 October 2014; Coden: Ibbie; Correspondence Address: Amusant, N.; CIRAD UMR Ecologie des foreˆts de GuyaneFrance |
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EcoFoG @ webmaster @ |
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561 |
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Carrias, J.-F.; Céréghino, R.; Brouard, O.; Pélozuelo, L.; Dejean, A.; Couté, A.; Corbara, B.; Leroy, C. |
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Two coexisting tank bromeliads host distinct algal communities on a tropical inselberg |
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Journal Article |
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2014 |
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Plant Biology |
Abbreviated Journal |
Plant Biol. |
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16 |
Issue |
5 |
Pages |
997-1004 |
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Keywords |
Algae; Bromeliaceae; Inselberg; Neotropics; Phytotelmata; Aechmea; algae; Bromeliaceae; Bumilleriopsis; Catopsis berteroniana; Chlorella (unclassified Chlorophyceae); Chlorella (unclassified Trebouxiophyceae); Chlorella sp.; Cyanobacteria; Eukaryota; Invertebrata; Protozoa |
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The tank bromeliads Aechmea aquilega (Salisb.) and Catopsis berteroniana (Schultes f.) coexist on a sun-exposed Neotropical inselberg in French Guiana, where they permit conspicuous freshwater pools to form that differ in size, complexity and detritus content. We sampled the algal communities (both eukaryotic and cyanobacterial taxa, including colourless forms) inhabiting either A. aquilega (n = 31) or C. berteroniana (n = 30) and examined differences in community composition and biomass patterns in relation to several biotic and abiotic variables. Chlorella sp. and Bumilleriopsis sp. were the most common taxa and dominated the algal biomass in A. aquilega and C. berteroniana, respectively. Using a redundancy analysis, we found that water volume, habitat complexity and the density of phagotrophic protozoa and collector-gatherer invertebrates were the main factors explaining the distribution of the algal taxa among the samples. Hierarchical clustering procedures based on abundance and presence/absence data clearly segregated the samples according to bromeliad species, revealing that the algal communities in the smaller bromeliad species were not a subset of the communities found in the larger bromeliad species. We conclude that, even though two coexisting tank bromeliad populations create adjacent aquatic habitats, each population hosts a distinct algal community. Hence, bromeliad diversity is thought to promote the local diversity of freshwater algae in the Neotropics. © 2014 German Botanical Society and The Royal Botanical Society of the Netherlands. |
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IRD, UMR AMAP (botAnique et bioinforMatique de l'Architecture des Plantes), Montpellier, France |
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Blackwell Publishing Ltd |
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14388677 (Issn) |
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Export Date: 2 September 2014; Coden: Pbiof; Correspondence Address: Carrias, J.-F.; Clermont Université, Université Blaise Pascal, BP 10448, F-63000 Clermont-Ferrand, France; email: j-francois.carrias@univ-bpclermont.fr; Funding Details: LQ13C020005, NSFC, National Natural Science Foundation of China |
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EcoFoG @ webmaster @ |
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560 |
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Malé, P.-J.G.; Bardon, L.; Besnard, G.; Coissac, E.; Delsuc, F.; Engel, J.; Lhuillier, E.; Scotti-Saintagne, C.; Tinaut, A.; Chave, J. |
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Genome skimming by shotgun sequencing helps resolve the phylogeny of a pantropical tree family |
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Journal Article |
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2014 |
Publication |
Molecular Ecology Resources |
Abbreviated Journal |
Mol. Ecol. Resour. |
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14 |
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5 |
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966-975 |
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Next-generation sequencing; Organellar genome; Phylogenomics; Tropical trees |
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Whole genome sequencing is helping generate robust phylogenetic hypotheses for a range of taxonomic groups that were previously recalcitrant to classical molecular phylogenetic approaches. As a case study, we performed a shallow shotgun sequencing of eight species in the tropical tree family Chrysobalanaceae to retrieve large fragments of high-copy number DNA regions and test the potential of these regions for phylogeny reconstruction. We were able to assemble the nuclear ribosomal cluster (nrDNA), the complete plastid genome (ptDNA) and a large fraction of the mitochondrial genome (mtDNA) with approximately 1000×, 450× and 120× sequencing depth respectively. The phylogenetic tree obtained with ptDNA resolved five of the seven internal nodes. In contrast, the tree obtained with mtDNA and nrDNA data were largely unresolved. This study demonstrates that genome skimming is a cost-effective approach and shows potential in plant molecular systematics within Chrysobalanaceae and other under-studied groups. © 2014 John Wiley & Sons Ltd. |
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GeT-PlaGe, Genotoul, INRA Auzeville, Castanet-Tolosan, F-31326, France |
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Blackwell Publishing Ltd |
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17550998 (Issn) |
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Export Date: 1 September 2014; Correspondence Address: Malé, P.-J.G.; UMR 5174 Laboratoire Évolution and Diversité Biologique, CNRS, Université Paul Sabatier, ENFA, 118 route de Narbonne, Toulouse, F-31062, France; email: pjg.male@gmail.com |
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EcoFoG @ webmaster @ |
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559 |
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Dejean, A.; Azémar, F.; Roux, O. |
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An invasive ant species able to counterattack marabunta raids |
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Journal Article |
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2014 |
Publication |
Comptes Rendus Biologies |
Abbreviated Journal |
C. R. Biol. |
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337 |
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7-8 |
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475-479 |
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Antipredation; Army ants; Colony mate recognition; Eciton; Pheidole; aggression; ant; article; bioassay; Eciton burchellii; Eciton hamatum; emulsion; insect society; mass fragmentography; Neotropics; nonhuman; Pheidole megacephala |
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In the Neotropics where it was introduced, the invasive ant Pheidole megacephala counterattacked raids by the army ants Eciton burchellii or E. hamatum. The Eciton workers that returned to their bivouac were attacked and spread-eagled and most of them killed by their outgoing colony mates. Little by little the zone where returning and outgoing Eciton workers encountered one another moved away from the Pheidole nest which was no longer attacked, so that most of the colony was spared. Using a water-based technique rounded out by bioassays, we show that Pheidole compounds were transferred onto the Eciton cuticle during the counterattacks, so that outgoing workers do not recognize returning colony mates, likely perceived as potential prey. Because P. megacephala is an introduced African species, this kind of protection, which cannot be the result of coevolutive processes, corresponds to a kind of by-product due to its aggressiveness during colony defence. © 2014 Académie des sciences. |
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IRD, MIVEGEC (IRD 224 CNRS 5290-UM1-UM2) Équipe BEES, 911, avenue Agropolis, 34394 Montpellier cedex 5, France |
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Elsevier Masson SAS |
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17683238 (Issn) |
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Export Date: 1 September 2014; Coden: Crboc; Correspondence Address: Dejean, A.; CNRS UMR 8172, Écologie des Forêts de Guyane, BP 316, 97379 Kourou cedex, France; email: alain.dejean@wanadoo.fr |
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EcoFoG @ webmaster @ |
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557 |
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Author |
Leguet, A.; Gibernau, M.; Shintu, L.; Caldarelli, S.; Moja, S.; Baudino, S.; Caissard, J.-C. |
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Title |
Evidence for early intracellular accumulation of volatile compounds during spadix development in Arum italicum L. and preliminary data on some tropical Aroids |
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Journal Article |
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Year |
2014 |
Publication |
Naturwissenschaften |
Abbreviated Journal |
Naturwissenschaften |
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Volume |
101 |
Issue |
8 |
Pages |
623-635 |
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Keywords |
Araceae; Cytochemistry; Gas chromatography; Nuclear magnetic resonance; Volatile compounds |
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Abstract |
Staining and histochemistry of volatile organic compounds (VOCs) were performed at different inflorescence developmental stages on nine aroid species; one temperate, Arum italicum and eight tropical from the genera Caladium, Dieffenbachia and Philodendron. Moreover, a qualitative and quantitative analysis of VOCs constituting the scent of A. italicum, depending on the stage of development of inflorescences was also conducted. In all nine species, vesicles were observed in the conical cells of either the appendix or the stamens (thecae) and the staminodes. VOCs were localised in intracellular vesicles from the early stages of inflorescence development until their release during receptivity of gynoecium. This localisation was observed by the increase of both number and diameter of the vesicles during 1 week before receptivity. Afterwards, vesicles were fewer and smaller but rarely absent. In A. italicum, staining and gas chromatography analyses confirmed that the vesicles contained terpenes. The quantitatively most important ones were the sesquiterpenes, but monoterpenes were not negligible. Indeed, the quantities of terpenes matched the vesicles' size evolution during 1 week. Furthermore, VOCs from different biosynthetic pathways (sesquiterpenes and alkanes) were at their maximum quantity 2 days before gynoecium receptivity (sesquiterpenes and alkanes) or during receptivity (isobutylamine, monoterpenes, skatole and p-cresol). VOCs seemed to be emitted during gynoecium receptivity and/or during thermogenesis, and FADs are accumulated after thermogenesis in the spadix. These complex dynamics of the different VOCs could indicate specialisation of some VOCs and cell machinery to attract pollinators on the one hand and to repulse/protect against phytophagous organisms and pathogens after pollination on the other hand. © 2014 Springer-Verlag Berlin Heidelberg. |
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Address |
CNRS, UMR-6134 SPE, 20000 Ajaccio, France |
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Springer Verlag |
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ISSN |
00281042 (Issn) |
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Notes |
Export Date: 1 September 2014; Coden: Natwa; Correspondence Address: Gibernau, M.; CNRS, UMR-6134 SPE, 20000 Ajaccio, France; email: gibernau@univ-corse.fr |
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EcoFoG @ webmaster @ |
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558 |
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