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Fortunel, C.; Paine, C.E.T.; Fine, P.V.A.; Mesones, I.; Goret, J.; Burban, B.; Cazal, J.; Baraloto, C.; Comita, L. |
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There's no place like home: seedling mortality contributes to the habitat specialisation of tree species across Amazonia |
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2016 |
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Ecology Letters |
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Ecology Letters |
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19 |
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10 |
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1256-1266 |
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Amazon basin; forests habitats; habitat association; herbivory; light availability; plant lineages; rainfall temporal variation; seedling performance; soil fertility; tropical trees |
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Understanding the mechanisms generating species distributions remains a challenge, especially in hyperdiverse tropical forests. We evaluated the role of rainfall variation, soil gradients and herbivory on seedling mortality, and how variation in seedling performance along these gradients contributes to habitat specialisation. In a 4-year experiment, replicated at the two extremes of the Amazon basin, we reciprocally transplanted 4638 tree seedlings of 41 habitat-specialist species from seven phylogenetic lineages among the three most important forest habitats of lowland Amazonia. Rainfall variation, flooding and soil gradients strongly influenced seedling mortality, whereas herbivory had negligible impact. Seedling mortality varied strongly among habitats, consistent with predictions for habitat specialists in most lineages. This suggests that seedling performance is a primary determinant of the habitat associations of adult trees across Amazonia. It further suggests that tree diversity, currently mostly harboured in terra firme forests, may be strongly impacted by the predicted climate changes in Amazonia. © 2016 John Wiley & Sons Ltd/CNRS |
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Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, United States |
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EcoFoG @ webmaster @ |
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698 |
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Lehnebach, R.; Morel, H.; Bossu, J.; Le Moguédec, G.; Amusant, N.; Beauchene, J.; Nicolini, E. |
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Heartwood/sapwood profile and the tradeoff between trunk and crown increment in a natural forest: the case study of a tropical tree (Dicorynia guianensis Amsh., Fabaceae) |
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2017 |
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Trees – Structure and Function |
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Trees – Structure and Function |
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31 |
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1 |
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199-214 |
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Dicorynia guianensis; Growth allocation; Heartwood; Ontogeny; Sapwood; Tropical tree |
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Key message: Sapwood area and the radial growth rate of the trunk follow the same pattern at breast height, with an initial increase and subsequent constant value, resulting from the increasing growth allocation toward the crown rather than tree decline. Heartwood area and heartwood volume in the trunk increase more rapidly after this shift occurs. Abstract: Sapwood (SW) and heartwood (HW) are two functionally distinct classifications of wood in perennial stems for which quantities can vary greatly in tropical trees. Numerous positive correlations have been found between the radial growth rate (RGR) and SW quantity; however, variations in the SW/HW quantities have not been studied in light of the ontogenetic variation of RGR. Wood core sampling, intensive measurements of tree structure (number of branches, stem volumes), and radial growth monitoring were performed on an abundant and highly exploited tree species in French Guiana (Dicorynia guianensis) to investigate the relationship between RGR, SW/HW quantity, tree structure, and their variations on the course of a tree’s ontogeny. SW area and RGR followed the same pattern of variation throughout tree development, both increasing first and reaching a steady state after 50 cm DBH (diameter at breast height). After this value, we observed a strong increase in both the HW area and HW volume increment, concomitant with a more rapid increase in crown volume. The stabilization of RGR for trees with DBH > 50 cm was related not to a tree’s decline but rather to an increasing wood allocation to the crown, confirming that RGR at breast height is a poor indicator of whole-tree growth for bigger individuals. We also confirmed that HW formation is an ontogenetic process managing SW quantity that is continuously and increasingly produced within the crown as the tree grows. This study highlights the effect of growth-mediated ontogenetic changes on the localization of water and carbohydrate storage within a tree, resulting from SW and HW dynamics throughout tree ontogeny. © 2016, Springer-Verlag Berlin Heidelberg. |
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CIRAD, UMR EcoFoG, BP701, Kourou Cedex, French Guiana |
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Export Date: 19 February 2017 |
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EcoFoG @ webmaster @ |
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733 |
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Pavoine, S.; Marcon, E.; Ricotta, C. |
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‘Equivalent numbers’ for species, phylogenetic or functional diversity in a nested hierarchy of multiple scales |
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2016 |
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Methods in Ecology and Evolution |
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Methods in Ecology and Evolution |
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7 |
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10 |
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1152-1163 |
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alpha diversity; beta diversity; biodiversity; community ecology; community phylogenetics; diversity apportionment; gamma diversity; quadratic entropy |
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Many recent studies have searched to integrate species’ functions and phylogenies in the measurement of biodiversity. To obtain easily interpretable measures, some researchers recommended diversity indices expressed in terms of equivalent numbers of species: the number of equally likely and maximally dissimilar species needed to produce the given value of diversity. Then, biodiversity is often calculated at three scales: within communities (α diversity), among communities (β diversity) and in a region (γ diversity). These three scales are, however, insufficient to tackle the organization of biodiversity in space because, for most organisms, there is a nested hierarchy of multiple scales characterized by different patterns and processes, from the small neighbourhood to the biosphere. We developed methodologies for analysing species, functional, taxonomic or phylogenetic diversity in a hierarchy of multiple scales using equivalent numbers of species. As an example, we analysed the taxonomic and functional diversity of macroinvertebrate assemblages in the Loire River, France, at four levels: within sites (α diversity), among sites within geological regions (β1 diversity), among geological regions (β2 diversity) and at the river scale (γ diversity). The new hierarchical approaches of biodiversity revealed very low differences among sites within regions and among regions in terms of taxonomy and functional traits (size and diet), despite moderate, significant species turnover among geological regions. We compare our framework with those other authors have developed. We argue that different definitions of α, β, γ diversities are used in the literature reflecting different points of view on biodiversity. We make recommendations on how to normalize functional (or phylogenetic) dissimilarities among species to render sites and regions comparable, and discuss the pros and cons of our approach. The hierarchical approaches of biodiversity in terms of ‘equivalent numbers’ respond to current demands to obtain intuitive, easily interpretable components of biodiversity. The approaches we propose go beyond current developments by considering a hierarchy of spatial scales and unbalanced sampling design. They will provide powerful tools to detect the ecological and evolutionary processes that act differently at different scales. © 2016 The Authors. Methods in Ecology and Evolution © 2016 British Ecological Society |
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Department of Environmental Biology, University of Rome ‘La Sapienza’, Piazzale Aldo Moro 5, Rome, Italy |
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Export Date: 20 October 2016 |
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697 |
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Schimann, H.; Bach, C.; Lengelle, J.; Louisanna, E.; Barantal, S.; Murat, C.; Buée, M. |
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Diversity and Structure of Fungal Communities in Neotropical Rainforest Soils: The Effect of Host Recurrence |
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2017 |
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Microbial Ecology |
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Microbial Ecology |
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73 |
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2 |
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310-320 |
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Amazonian forest; Fungal communities; Host recurrence; Litter; Second-generation sequencing; Soil |
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The patterns of the distribution of fungal species and their potential interactions with trees remain understudied in Neotropical rainforests, which harbor more than 16,000 tree species, mostly dominated by endomycorrhizal trees. Our hypothesis was that tree species shape the non-mycorrhizal fungal assemblages in soil and litter and that the diversity of fungal communities in these two compartments is partly dependent on the coverage of trees in the Neotropical rainforest. In French Guiana, a long-term plantation and a natural forest were selected to test this hypothesis. Fungal ITS1 regions were sequenced from soil and litter samples from within the vicinity of tree species. A broad range of fungal taxa was found, with 42 orders and 14 classes. Significant spatial heterogeneity in the fungal communities was found without strong variation in the species richness and evenness among the tree plots. However, tree species shaped the fungal assemblages in the soil and litter, explaining up to 18 % of the variation among the communities in the natural forest. These results demonstrate that vegetation cover has an important effect on the structure of fungal assemblages inhabiting the soil and litter in Amazonian forests, illustrating the relative impact of deterministic processes on fungal community structures in these highly diverse ecosystems. © 2016, Springer Science+Business Media New York. |
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Equipe Environnement et Microbiologie, Institut Pluridisciplinaire de Recherche en Environnement et Matériaux, Université de Pau et Pays de l’Adour, Pau, France |
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Export Date: 19 February 2017 |
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Lenoir, A.; Devers, S.; Touchard, A.; Dejean, A. |
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The Guianese population of the fire ant Solenopsis saevissima is unicolonial |
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2016 |
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Insect Science |
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Insect Science |
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23 |
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5 |
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739-745 |
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biological invasions; cuticular hydrocarbons; fire ants; unicoloniality |
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In this study, conducted in French Guiana, a part of the native range of the fire ant Solenopsis saevissima, we compared the cuticular hydrocarbon profiles of media workers with previous results based on intraspecific aggressiveness tests. We noted a strong congruence between the two studies permitting us to delimit 2 supercolonies extending over large distances (up to 54 km), a phenomenon known as unicoloniality. Solenopsis geminata workers, taken as an out-group for cluster analyses, have a very different cuticular hydrocarbon profile. Because S. saevissima has been reported outside its native range, our conclusion is that this species has the potential to become invasive because unicoloniality (i.e., the main attribute for ants to become invasive) was shown at least for the Guianese population. © 2015 Institute of Zoology, Chinese Academy of Sciences |
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CNRS, Ecolab (UMR-CNRS 5245), Toulouse, France |
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696 |
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Aili, S.R.; Touchard, A.; Koh, J.M.S.; Dejean, A.; Orivel, J.; Padula, M.P.; Escoubas, P.; Nicholson, G.M. |
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Comparisons of Protein and Peptide Complexity in Poneroid and Formicoid Ant Venoms |
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2016 |
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Journal of Proteome Research |
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Journal of Proteome Research |
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15 |
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9 |
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3039-3054 |
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ant venom; Hymenoptera; Lc-Maldi-Tof Ms; mass spectrometry; nanoLC-ESI-QTOF MS/MS; peptidome; proteomic analysis; toxin |
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Animal venom peptides are currently being developed as novel drugs and bioinsecticides. Because ants use venoms for defense and predation, venomous ants represent an untapped source of potential bioactive toxins. This study compared the protein and peptide components of the poneroid ants Neoponera commutata, Neoponera apicalis, and Odontomachus hastatus and the formicoid ants Ectatomma tuberculatum, Ectatomma brunneum, and Myrmecia gulosa. 1D and 2D PAGE revealed venom proteins in the mass range <10 to >250 kDa. NanoLC-ESI-QTOF MS/MS analysis of tryptic peptides revealed the presence of common venom proteins and also many undescribed proteins. RP-HPLC separation followed by MALDI-TOF MS of the venom peptides also revealed considerable heterogeneity. It was found that the venoms contained between 144 and 1032 peptides with 5-95% of peptides in the ranges 1-4 and 1-8 kDa for poneroid and formicoid ants, respectively. By employing the reducing MALDI matrix 1,5-diaminonapthalene, up to 28 disulfide-bonded peptides were also identified in each of the venoms. In particular, the mass range of peptides from poneroid ants is lower than peptides from other venoms, indicating possible novel structures and pharmacologies. These results indicate that ant venoms represent an enormous, untapped source of novel therapeutic and bioinsecticide leads. © 2016 American Chemical Society. |
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VenomeTech, 473 Route des Dolines, Valbonne, France |
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Export Date: 15 September 2016 |
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695 |
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Touchard, A.; Brust, A.; Cardoso, F.C.; Chin, Y.K.-Y.; Herzig, V.; Jin, A.-H.; Dejean, A.; Alewood, P.F.; King, G.F.; Orivel, J.; Escoubas, P. |
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Isolation and characterization of a structurally unique β-hairpin venom peptide from the predatory ant Anochetus emarginatus |
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2016 |
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Biochimica et Biophysica Acta – General Subjects |
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Biochimica et Biophysica Acta – General Subjects |
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1860 |
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11 |
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2553-2562 |
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Anochetus; Ant venom; Disulfide-rich peptides; L-type calcium channels; Neurotoxin; Poneritoxins; U1-PONTX-Ae1a |
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Background Most ant venoms consist predominantly of small linear peptides, although some contain disulfide-linked peptides as minor components. However, in striking contrast to other ant species, some Anochetus venoms are composed primarily of disulfide-rich peptides. In this study, we investigated the venom of the ant Anochetus emarginatus with the aim of exploring these novel disulfide-rich peptides. Methods The venom peptidome was initially investigated using a combination of reversed-phase HPLC and mass spectrometry, then the amino acid sequences of the major peptides were determined using a combination of Edman degradation and de novo MS/MS sequencing. We focused on one of these peptides, U1-PONTX-Ae1a (Ae1a), because of its novel sequence, which we predicted would form a novel 3D fold. Ae1a was chemically synthesized using Fmoc chemistry and its 3D structure was elucidated using NMR spectroscopy. The peptide was then tested for insecticidal activity and its effect on a range of human ion channels. Results Seven peptides named poneritoxins (PONTXs) were isolated and sequenced. The three-dimensional structure of synthetic Ae1a revealed a novel, compact scaffold in which a C-terminal β-hairpin is connected to the N-terminal region via two disulfide bonds. Synthetic Ae1a reversibly paralyzed blowflies and inhibited human L-type voltage-gated calcium channels (CaV1). Conclusions Poneritoxins from Anochetus emarginatus venom are a novel class of toxins that are structurally unique among animal venoms. General significance This study demonstrates that Anochetus ant venoms are a rich source of novel ion channel modulating peptides, some of which might be useful leads for the development of biopesticides. © 2016 |
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VenomeTech, 473 Route des Dolines, Valbonne, France |
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694 |
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Engel, J.; Brousseau, L.; Baraloto, C. |
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GuiaTreeKey, a multi-access electronic key to identify tree genera in French Guiana |
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2016 |
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PhytoKeys |
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PhytoKeys |
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68 |
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1 |
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27-44 |
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Amazonia; Electronic key; French Guiana; Morphological characters; Neotropics; Trees identification; Xper2 |
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The tropical rainforest of Amazonia is one of the most species-rich ecosystems on earth, with an estimated 16000 tree species. Due to this high diversity, botanical identification of trees in the Amazon is difficult, even to genus, often requiring the assistance of parataxonomists or taxonomic specialists. Advances in informatics tools offer a promising opportunity to develop user-friendly electronic keys to improve Amazonian tree identification. Here, we introduce an original multi-access electronic key for the identification of 389 tree genera occurring in French Guiana terra-firme forests, based on a set of 79 morphological characters related to vegetative, floral and fruit characters. Its purpose is to help Amazonian tree identification and to support the dissemination of botanical knowledge to non-specialists, including forest workers, students and researchers from other scientific disciplines. The electronic key is accessible with the free access software Xper2, and the database is publicly available on figshare: https://figshare.com/s/75d890b7d707e0ffc9bf (doi: 10.6084/m9.figshare.2682550). © Julien Engel et al. |
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International Center for Tropical Botany, Department of Biological Sciences, Florida International University, 11200 SW 8th Street, Miami, FL, United States |
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Falster, D.S.; Duursma, R.A.; Ishihara, M.I.; Barneche, D.R.; FitzJohn, R.G.; Vårhammar, A.; Aiba, M.; Ando, M.; Anten, N.; Aspinwall, M.J.; Baltzer, J.L.; Baraloto, C.; Battaglia, M.; Battles, J.J.; Lamberty, B.B.; Van Breugel, M.; Camac, J.; Claveau, Y.; Coll, L.; Dannoura, M.; Delagrange, S.; Domec, J.C.; Fatemi, F.; Feng, W.; Gargaglione, V.; Goto, Y.; Hagihara, A.; Hall, J.S.; Hamilton, S.; Harja, D.; Hiura, T.; Holdaway, R.; Hutley, L.B.; Ichie, T.; Jokela, E.J.; Kantola, A.; Kelly, J.W.G.; Kenzo, T.; King, D.; Kloeppel, B.D.; Kohyama, T.; Komiyama, A.; Laclau, J.P.; Lusk, C.H.; Maguire, D.A.; Le Maire, G.; Mäkelä, A.; Markesteijn, L.; Marshall, J.; McCulloh, K.; Miyata, I.; Mokany, K.; Mori, S.; Myster, R.W.; Nagano, M.; Naidu, S.L.; Nouvellon, Y.; O'Grady, A.P.; O'Hara, K.L.; Ohtsuka, T.; Osada, N.; Osunkoya, O.O.; Peri, P.L.; Petritan, A.M.; Poorter, L.; Portsmuth, A.; Potvin, C.; Ransijn, J.; Reid, D.; Ribeiro, S.C.; Roberts, S.D.; Rodríguez, R.; Acosta, A.S.; Santa-Regina, I.; Sasa, K.; Selaya, N.G.; Sillett, S.C.; Sterck, F.; Takagi, K.; Tange, T.; Tanouchi, H.; Tissue, D.; Umehara, T.; Utsugi, H.; Vadeboncoeur, M.A.; Valladares, F.; Vanninen, P.; Wang, J.R.; Wenk, E.; Williams, R.; De Aquino Ximenes, F.; Yamaba, A.; Yamada, T.; Yamakura, T.; Yanai, R.D.; York, R.A. |
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BAAD: a Biomass And Allometry Database for woody plants |
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2015 |
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Ecology |
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Ecology |
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96 |
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5 |
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1445 |
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Allometric equations; Biomass allocation; Biomass partitioning; Global carbon cycle; Plant allometry; Plant traits |
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Understanding how plants are constructed; i.e., how key size dimensions and the amount of mass invested in different tissues varies among individuals; is essential for modeling plant growth, estimating carbon stocks, and mapping energy fluxes in the terrestrial biosphere. Allocation patterns can differ through ontogeny, but also among coexisting species and among species adapted to different environments. While a variety of models dealing with biomass allocation exist, we lack a synthetic understanding of the underlying processes. This is partly due to the lack of suitable data sets for validating and parameterizing models. To that end, we present the Biomass and allometry database (BAAD) for woody plants. The BAAD contains 259 634 measurements collected in 176 different studies, from 21 084 individuals across 678 species. Most of these data come from existing publications. However, raw data were rarely made public at time of publication. Thus the BAAD contains individual level data from different studies, transformed into standard units and variable names. The transformations were achieved using a common workflow for all raw data files. Other features that distinguish the BAAD are: (i) measurements were for individual plants rather than stand averages; (ii) individuals spanning a range of sizes were measured; (iii) inclusion of plants from 0.01-100 m in height; and (iii) biomass was estimated directly, i.e., not indirectly via allometric equations (except in very large trees where biomass was estimated from detailed subsampling). We included both wild and artificially grown plants. The data set contains the following size metrics: total leaf area; area of stem crosssection including sapwood, heartwood, and bark; height of plant and crown base, crown area, and surface area; and the dry mass of leaf, stem, branches, sapwood, heartwood, bark, coarse roots, and fine root tissues. We also report other properties of individuals (age, leaf size, leaf mass per area, wood density, nitrogen content of leaves and wood), as well as information about the growing environment (location, light, experimental treatment, vegetation type) where available. It is our hope that making these data available will improve our ability to understand plant growth, ecosystem dynamics, and carbon cycling in the world's vegetation. |
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Department of Disturbance Ecology, University of Bayreuth, Germany |
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Export Date: 1 September 2016 |
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EcoFoG @ webmaster @ |
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686 |
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Piponiot, C.; Cabon, A.; Descroix, L.; Dourdain, A.; Mazzei, L.; Ouliac, B.; Rutishauser, E.; Sist, P.; Herault, B. |
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A methodological framework to assess the carbon balance of tropical managed forests |
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2016 |
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Carbon Balance and Management |
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Carbon Balance and Management |
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11 |
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1 |
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Amazonia; Carbon cycle; Error propagation; Production forests; Selective logging |
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Background: Managed forests are a major component of tropical landscapes. Production forests as designated by national forest services cover up to 400 million ha, i.e. half of the forested area in the humid tropics. Forest management thus plays a major role in the global carbon budget, but with a lack of unified method to estimate carbon fluxes from tropical managed forests. In this study we propose a new time- and spatially-explicit methodology to estimate the above-ground carbon budget of selective logging at regional scale. Results: The yearly balance of a logging unit, i.e. the elementary management unit of a forest estate, is modelled by aggregating three sub-models encompassing (i) emissions from extracted wood, (ii) emissions from logging damage and deforested areas and (iii) carbon storage from post-logging recovery. Models are parametrised and uncertainties are propagated through a MCMC algorithm. As a case study, we used 38 years of National Forest Inventories in French Guiana, northeastern Amazonia, to estimate the above-ground carbon balance (i.e. the net carbon exchange with the atmosphere) of selectively logged forests. Over this period, the net carbon balance of selective logging in the French Guianan Permanent Forest Estate is estimated to be comprised between 0.12 and 1.33 Tg C, with a median value of 0.64 Tg C. Uncertainties over the model could be diminished by improving the accuracy of both logging damage and large woody necromass decay submodels. Conclusions: We propose an innovating carbon accounting framework relying upon basic logging statistics. This flexible tool allows carbon budget of tropical managed forests to be estimated in a wide range of tropical regions. © 2016 The Author(s). |
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CNRS, UMR EcoFoG, AgroParisTech, Inra, Université de la Guyane, Université des Antilles, Cirad, Campus Agronomique, Kourou, French Guiana |
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Export Date: 1 September 2016 |
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EcoFoG @ webmaster @ |
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688 |
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