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Zinger, L.; Chave, J.; Coissac, E.; Iribar, A.; Louisanna, E.; Manzi, S.; Schilling, V.; Schimann, H.; Sommeria-Klein, G.; Taberlet, P. |
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Extracellular DNA extraction is a fast, cheap and reliable alternative for multi-taxa surveys based on soil DNA |
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Journal Article |
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2016 |
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Soil Biology and Biochemistry |
Abbreviated Journal |
Soil Biology and Biochemistry |
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96 |
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16-19 |
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DNA extraction protocol; DNA metabarcoding; Multi-taxa biodiversity; Tropical forest |
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DNA metabarcoding on soil samples is increasingly used for large-scale and multi-taxa biodiversity studies. However, DNA extraction may be a major bottleneck for such wide uses. It should be cost/time effective and allow dealing with large sample volumes so as to maximise the representativeness of both micro- and macro-organisms diversity. Here, we compared the performances of a fast and cheap extracellular DNA extraction protocol with a total DNA extraction method in retrieving bacterial, eukaryotic and plant diversity from tropical soil samples of ca. 10 g. The total DNA extraction protocol yielded more high-quality DNA. Yet, the extracellular DNA protocol provided similar diversity assessments although it presented some differences in clades relative abundance and undersampling biases. We argue that extracellular DNA is a good compromise between cost, labor, and accuracy for high-throughput DNA metabarcoding studies of soil biodiversity. © 2016 Elsevier Ltd. |
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INRA UMR ECOFOG, Kourou, French Guiana |
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Export Date: 17 February 2016 |
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EcoFoG @ webmaster @ |
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663 |
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Royer, M.; Stien, D.; Beauchene, J.; Herbette, G.; McLean, J.P.; Thibaut, A.; Thibaut, B. |
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Title |
Extractives of the tropical wood wallaba (Eperua falcata Aubl.) as natural anti-swelling agents |
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Journal Article |
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2010 |
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Holzforschung |
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Holzforschung |
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64 |
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2 |
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211-215 |
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Wallaba (Eperua falcata) is a tropical wood that is known to have naturally high moisture related dimensional stability. Samples of wallaba heartwood were subjected to differential solvent extraction. Wood pieces that were extracted with methanol showed significantly greater swelling following rehydration from oven dry to 96% relative humidity than non- extracted samples and samples extracted with other solvents. Methanol soluble wallaba heartwood extract was purified by HPLC and the compounds present were characterized by NMR spectroscopy. The structure of 13 compounds in methanol extract was identified. The relative proportion of polar compounds in methanol extract was found to be high. The compounds identified are proposed to bind to the polymeric cell wall by means of multiple hydrogen bonds restricting the association of water and therefore act as natural anti-swelling agents. |
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0018-3830 |
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WOS:000274423900010 |
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EcoFoG @ webmaster @ |
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307 |
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Romero, G.Q.; Marino, N.A.C.; MacDonald, A.A.M.; Céréghino, R.; Trzcinski, M.K.; Mercado, D.A.; Leroy, C.; Corbara, B.; Farjalla, V.F.; Barberis, I.M.; Dézerald, O.; Hammill, E.; Atwood, T.B.; Piccoli, G.C.O.; Bautista, F.O.; Carrias, J.-F.; Leal, J.S.; Montero, G.; Antiqueira, P.A.P.; Freire, R.; Realpe, E.; Amundrud, S.L.; de Omena, P.M.; Campos, A.B.A.; Kratina, P.; O’Gorman, E.J.; Srivastava, D.S. |
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Title |
Extreme rainfall events alter the trophic structure in bromeliad tanks across the Neotropics |
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Journal Article |
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2020 |
Publication |
Nature Communications |
Abbreviated Journal |
Nat. Commun. |
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11 |
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3215 |
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fresh water; rain; fresh water; agricultural intensification; angiosperm; biomass; climate change; ecosystem function; extreme event; food web; freshwater ecosystem; Neotropic Ecozone; precipitation intensity; rainfall; trophic structure; Article; biomass; Central America; controlled study; detritivore; drought; flooding; food web; hydrology; microcosm; Neotropics; nonhuman; precipitation; predator; South America; trophic level; animal; biodiversity; Bromelia; climate change; ecosystem; flooding; food chain; Central America; South America; Animals; Biodiversity; Biomass; Bromelia; Climate Change; Droughts; Ecosystem; Floods; Food Chain; Fresh Water; Hydrology; South America |
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Changes in global and regional precipitation regimes are among the most pervasive components of climate change. Intensification of rainfall cycles, ranging from frequent downpours to severe droughts, could cause widespread, but largely unknown, alterations to trophic structure and ecosystem function. We conducted multi-site coordinated experiments to show how variation in the quantity and evenness of rainfall modulates trophic structure in 210 natural freshwater microcosms (tank bromeliads) across Central and South America (18°N to 29°S). The biomass of smaller organisms (detritivores) was higher under more stable hydrological conditions. Conversely, the biomass of predators was highest when rainfall was uneven, resulting in top-heavy biomass pyramids. These results illustrate how extremes of precipitation, resulting in localized droughts or flooding, can erode the base of freshwater food webs, with negative implications for the stability of trophic dynamics. © 2020, The Author(s). |
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Institute of Biological Sciences, Universidade Federal do Pará, Belém, PA, Brazil |
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Nature Research |
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20411723 (Issn) |
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EcoFoG @ webmaster @ |
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944 |
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Colin, F.; Sanjines, A.; Fortin, M.; Bontemps, J.-D.; Nicolini, E. |
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Fagus sylvatica trunk epicormics in relation to primary and secondary growth |
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Journal Article |
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2012 |
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Annals of Botany |
Abbreviated Journal |
Ann. Bot. |
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110 |
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5 |
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995-1005 |
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epicormics; European beech; Fagus sylvatica; mixed ZIP models; ontogeny; radial growth; sprouting |
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Background and AimsEuropean beech epicormics have received far less attention than epicormics of other species, especially sessile oak. However, previous work on beech has demonstrated that there is a negative effect of radial growth on trunk sprouting, while more recent investigations on sessile oak proved a strong positive influence of the presence of epicormics. The aims of this study were, first, to make a general quantification of the epicormics present along beech stems and, secondly, to test the effects of both radial growth and epicormic frequency on sprouting. MethodsIn order to test the effect of radial growth, ten forked individuals were sampled, with a dominant and a dominated fork of almost equal length for every individual. To test the effects of primary growth and epicormic frequency, on the last 17 annual shoots of each fork arm, the number of axillary buds, shoot length, ring width profiles, epicormic shoots and other epicormics were carefully recorded. Key ResultsThe distribution of annual shoot length, radial growth profiles and parallel frequencies of all epicormics are presented. The latter frequencies were parallel to the annual shoot lengths, nearly equivalent for both arms of each tree, and radial growth profiles included very narrow rings in the lowest annual shoots and even missing rings in the dominated arms alone. The location of the latent buds and the epicormics was mainly at branch base, while epicormic shoots, bud clusters and spheroblasts were present mainly in the lowest annual shoots investigated. Using a zero-inflated mixed model, sprouting was shown to depend positively on epicormic frequency and negatively on radial growth. ConclusionsSupport for a trade-off between cambial activity and sprouting is put forward. Sprouting mainly depends on the frequency of epicormics. Between-and within-tree variability of the epicormic composition in a given species may thus have fundamental and applied implications. © 2012 The Author. |
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Equipe Architecture et Développement des Plantes, CIRAD, Campus Agronomique de Silvolab, BP 701, 97387 Kourou cedex, Guyane, France |
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03057364 (Issn) |
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Export Date: 8 October 2012; Source: Scopus; Coden: Anboa; doi: 10.1093/aob/mcs178; Language of Original Document: English; Correspondence Address: Colin, F.; INRA, Centre de Nancy, UMR 1092 INRA-AgroParisTech LERFoB, 54280 Champenoux, France; email: colin@nancy.inra.fr |
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EcoFoG @ webmaster @ |
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439 |
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Bourreau, D.; Aimene, Y.; Beauchene, J.; Thibaut, B. |
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Feasibility of glued laminated timber beams with tropical hardwoods |
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Journal Article |
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2013 |
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European Journal of Wood and Wood Products |
Abbreviated Journal |
Eur. J. Wood Wood Prod. |
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71 |
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5 |
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653-662 |
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A feasibility study of glulam was carried out in French Guiana using local wood species. The aim was to determine gluing parameters affording satisfactory behaviour to manufactured glulam in a tropical climate. Three abundant wood species, with special properties, were selected for the study and resorcinol-phenol-formaldehyde resin was used for bonding. Three industrial parameters were considered: adhesive spread rate, closed assembly time and gluing pressure. Delamination and shearing tests were carried out in accordance with European Standards. The tests revealed the influence of wood properties and manufacturing parameters on joint resistance. In fact, the results showed that specific gravity and the shrinkage coefficient greatly influenced the gluing step. Indeed, wood with a medium specific gravity needed more adhesive and more pressure than wood with a high specific gravity. In addition, planing and lamella thickness were found to affect glue joint resistance. © 2013 Springer-Verlag Berlin Heidelberg. |
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CNRS-LMGC Université de Montpellier2, 34095 Montpellier, France |
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00183768 (Issn) |
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Export Date: 30 August 2013; Source: Scopus; doi: 10.1007/s00107-013-0721-4; Language of Original Document: English; Correspondence Address: Bourreau, D.; UAG-UMR Ecofog, Pôle Universitaire Guyanais, 97337 Cayenne cedex, French Guiana; email: dbourreau@nancy.inra.fr |
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EcoFoG @ webmaster @ |
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497 |
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Bourguignon, T.; Sobotnik, J.; Lepoint, G.; Martin, J.M.; Hardy, O.J.; Dejean, A.; Roisin, Y. |
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Feeding ecology and phylogenetic structure of a complex neotropical termite assemblage, revealed by nitrogen stable isotope ratios |
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Journal Article |
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2011 |
Publication |
Ecological Entomology |
Abbreviated Journal |
Ecol. Entomol. |
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36 |
Issue |
2 |
Pages |
261-269 |
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Diet diversity; feeding groups; Isoptera; phylogenetic autocorrelation |
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2. Nitrogen stable isotopes (hereafter delta 15N) were used to place termites from French Guiana rainforests along a wood-soil decomposition gradient, to test (i) whether feeding group assignation based on morphological characters was accurate and actually represented diet specialisation thresholds, and (ii) to what extent the dietary specialization of species is explained by phylogeny (phylogenetic autocorrelation). 3. delta 15N values vary over a range of 13 parts per thousand, suggesting that diet diversification contributes to the high species diversity in French Guiana. delta 15N values span a similar interval in all Termitidae subfamilies. Ranges of different subfamilies broadly overlap, although each of them diversified preferentially on one side of the wood-soil decomposition gradient. Congeneric species share similar feeding habits, whereas distant species tend to feed on distinct substrates. 4. Feeding groups did not completely match stable isotope data: there was no discontinuity between Groups III and IV, and no correlation between anatomical criteria used to distinguish these groups and delta 15N values. Nor was there any consistent difference in delta 15N values between wood feeders of the families Rhinotermitidae (Group I) and Termitidae (Group II). We also suggest that species feeding outside the wood-soil gradient should be distinguished for their peculiar feeding requirements. |
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[Sobotnik, Jan] Acad Sci Czech Republic, Inst Organ Chem & Biochem, Res Team Infochem, CR-16610 Prague 6, Czech Republic, Email: sobotnik@uochb.cas.cz |
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Wiley-Blackwell |
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0307-6946 |
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ISI:000288456300016 |
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no |
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EcoFoG @ webmaster @ |
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302 |
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Scotti, I.; González-Martínez, S.C.; Budde, K.B.; Lalague, H. |
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Fifty years of genetic studies: what to make of the large amounts of variation found within populations? |
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Journal Article |
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2016 |
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Annals of Forest Science |
Abbreviated Journal |
Annals of Forest Science |
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73 |
Issue |
1 |
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69-75 |
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Intra-specific variation; Microgeography; Natural selection; Population genomics |
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INRA, UMR745 Ecologie des Forêts de Guyane, Campus Agronomique, Kourou, French Guiana |
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Export Date: 7 March 2016 |
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EcoFoG @ webmaster @ |
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667 |
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Gao, H.; Grüschow, S.; Barke, J.; Seipke, R.F.; Hill, L.M.; Orivel, J.; Yu, D.W.; Hutchings, M.; Goss, R.J.M. |
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Title |
Filipins: The first antifungal “weed killers” identified from bacteria isolated from the trap-ant |
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Journal Article |
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2014 |
Publication |
RSC Advances |
Abbreviated Journal |
RSC Adv. |
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4 |
Issue |
100 |
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57267-57270 |
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Anti-fungal |
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Allomerus ants ensure that they have sufficient nitrogen in their diet by trapping and consuming other insects. In order to construct their traps, like the more extensively studied leaf cutter ants, they employ fungal farming. Pest management within these fungal cultures has been speculated to be due to the ants' usage of actinomycetes capable of producing antifungal compounds, analogous to the leafcutter ant mutualism. Here we report the first identification of a series of antifungal compounds, the filipins, and their associated biosynthetic genes isolated from a bacterium associated with this system. |
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State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of ZoologyKunming, Yunnan, China |
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Royal Society of Chemistry |
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20462069 (Issn) |
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Export Date: 20 November 2014; Coden: Rscac; Correspondence Address: Goss, R.J.M.; School of Chemistry, University of St. AndrewsUnited Kingdom; Funding Details: 311848, EC, European Commission |
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EcoFoG @ webmaster @ |
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567 |
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Hardy, O.J.; Maggia, L.; Bandou, E.; Breyne, P.; Caron, H.; Chevallier, M.H.; Doligez, A.; Dutech, C.; Kremer, A.; Latouche-Halle, C.; Troispoux, V.; Veron, V.; Degen, B. |
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Fine-scale genetic structure and gene dispersal inferences in 10 Neotropical tree species |
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Journal Article |
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2006 |
Publication |
Molecular Ecology |
Abbreviated Journal |
Mol. Ecol. |
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15 |
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2 |
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559-571 |
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French Guiana; gene dispersal; seed dispersal; spatial genetic structure; tropical trees |
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The extent of gene dispersal is a fundamental factor of the population and evolutionary dynamics of tropical tree species, but directly monitoring seed and pollen movement is a difficult task. However, indirect estimates of historical gene dispersal can be obtained from the fine-scale spatial genetic structure of populations at drift-dispersal equilibrium. Using an approach that is based on the slope of the regression of pairwise kinship coefficients on spatial distance and estimates of the effective population density, we compare indirect gene dispersal estimates of sympatric populations of 10 tropical tree species. We re-analysed 26 data sets consisting of mapped allozyme, SSR (simple sequence repeat), RAPD (random amplified polymorphic DNA) or AFLP (amplified fragment length polymorphism) genotypes from two rainforest sites in French Guiana. Gene dispersal estimates were obtained for at least one marker in each species, although the estimation procedure failed under insufficient marker polymorphism, limited sample size, or inappropriate sampling area. Estimates generally suffered low precision and were affected by assumptions regarding the effective population density. Averaging estimates over data sets, the extent of gene dispersal ranged from 150 m to 1200 m according to species. Smaller gene dispersal estimates were obtained in species with heavy diaspores, which are presumably not well dispersed, and in populations with high local adult density. We suggest that limited seed dispersal could indirectly limit effective pollen dispersal by creating higher local tree densities, thereby increasing the positive correlation between pollen and seed dispersal distances. We discuss the potential and limitations of our indirect estimation procedure and suggest guidelines for future studies. |
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Univ Libre Bruxelles, Serv Ecoethol Evolut, B-1050 Brussels, Belgium, Email: ohardy@ulb.ac.be |
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BLACKWELL PUBLISHING |
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0962-1083 |
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ISI:000235045500021 |
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EcoFoG @ eric.marcon @ |
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183 |
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Baraloto, C.; Couteron, P. |
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Title |
Fine-scale Microhabitat Heterogeneity in a French Guianan Forest |
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Journal Article |
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Year |
2010 |
Publication |
Biotropica |
Abbreviated Journal |
Biotropica |
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42 |
Issue |
4 |
Pages |
420-428 |
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canopy gap; geostatistics; light availability; microclimate; soil moisture; soil nutrients; topography |
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We examined fine-scale heterogeneity of environmental conditions in a primary rain forest in French Guiana to describe variation in microhabitats that plants may experience during establishment. We characterized both the range as well as the spatial structuring of 11 environmental factors important for seedling establishment in six hexagonal sampling grids, one each in gap and understory sites at three points representing the predominant geomorphic units in this primary forest. Each grid contained 37 sampling points separated by 31 cm-20 m. Monte-Carlo tests of semivariograms against complete spatial randomness indicated that for many variables in all six sampling grids, spatial dependence did not exceed 1 m. A principal component analysis of all sampling points revealed a lack of spatial microhabitat structure, rather than homogeneous patches associated with canopy structure or geomorphology. Our results suggest that ample fine-scale spatial heterogeneity exists to support the coexistence of plant species with differential abiotic requirements for regeneration. |
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[Baraloto, Christopher] INRA, UMR Ecol Forets Guyane, F-97387 Kourou, France, Email: chris.baraloto@ecofog.gf |
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WILEY-BLACKWELL PUBLISHING, INC |
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0006-3606 |
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ISI:000279438900005 |
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EcoFoG @ eric.marcon @ |
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