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Wagner, F.H.; Herault, B.; Bonal, D.; Stahl, C.; Anderson, L.O.; Baker, T.R.; Sebastian Becker, G.; Beeckman, H.; Boanerges Souza, D.; Cesar Botosso, P.; Bowman, D.M.J.S.; Bräuning, A.; Brede, B.; Irving Brown, F.; Julio Camarero, J.; Camargo, P.B.; Cardoso, F.C.G.; Carvalho, F.A.; Castro, W.; Koloski Chagas, R.; Chave, J.; Chidumayo, E.N.; Clark, D.A.; Regina Capellotto Costa, F.; Couralet, C.; Henrique Da Silva Mauricio, P.; Dalitz, H.; Resende De Castro, V.; Milani, J.E.D.F.; Consuelo De Oliveira, E.; De Souza Arruda, L.; Devineau, J.L.; Drew, D.M.; Dünisch, O.; Durigan, G.; Elifuraha, E.; Fedele, M.; Ferreira Fedele, L.; Figueiredo Filho, A.; Finger, C.A.G.; César Franco, A.; Jnior, L.F.; Galvão, F.; Gebrekirstos, A.; Gliniars, R.; Maurício Lima De Alencastro Graça, P.; Griffiths, A.D.; Grogan, J.; Guan, K.; Homeier, J.; Raquel Kanieski, M.; Khoon Kho, L.; Koenig, J.; Valerio Kohler, S.; Krepkowski, J.; Lemos-Filho, J.P.; Lieberman, D.; Eugene Lieberman, M.; Sergio Lisi, C.; Longhi Santos, T.; Ayala, J.L.L.; Eijji Maeda, E.; Malhi, Y.; Maria, V.R.B.; Marques, M.C.M.; Marques, R.; Maza Chamba, H.; Mbwambo, L.; Liana Lisboa Melgaço, K.; Angela Mendivelso, H.; Murphy, B.P.; O'Brien, J.J.; F. Oberbauer, S.; Okada, N.; Plissier, R.; Prior, L.D.; Alejandro Roig, F.; Ross, M.; Rodrigo Rossatto, D.; Rossi, V.; Rowland, L.; Rutishauser, E.; Santana, H.; Schulze, M.; Selhorst, D.; Rodrigues Silva, W.; Silveira, M.; Spannl, S.; Swaine, M.D.; Toledo, J.J.; Miranda Toledo, M.; Toledo, M.; Toma, T.; Tomazello Filho, M.; Ignacio Valdez Hernández, J.; Verbesselt, J.; Aparecida Vieira, S.; Vincent, G.; Volkmer De Castilho, C.; Volland, F.; Worbes, M.; Lea Bolzan Zanon, M.; Aragão, L.E.O.C. |
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Title  |
Climate seasonality limits leaf carbon assimilation and wood productivity in tropical forests |
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Journal Article |
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2016 |
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Biogeosciences |
Abbreviated Journal |
Biogeosciences |
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13 |
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8 |
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2537-2562 |
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The seasonal climate drivers of the carbon cycle in tropical forests remain poorly known, although these forests account for more carbon assimilation and storage than any other terrestrial ecosystem. Based on a unique combination of seasonal pan-tropical data sets from 89 experimental sites (68 include aboveground wood productivity measurements and 35 litter productivity measurements), their associated canopy photosynthetic capacity (enhanced vegetation index, EVI) and climate, we ask how carbon assimilation and aboveground allocation are related to climate seasonality in tropical forests and how they interact in the seasonal carbon cycle. We found that canopy photosynthetic capacity seasonality responds positively to precipitation when rainfall is < 2000ĝ€-mmĝ€-yrĝ'1 (water-limited forests) and to radiation otherwise (light-limited forests). On the other hand, independent of climate limitations, wood productivity and litterfall are driven by seasonal variation in precipitation and evapotranspiration, respectively. Consequently, light-limited forests present an asynchronism between canopy photosynthetic capacity and wood productivity. First-order control by precipitation likely indicates a decrease in tropical forest productivity in a drier climate in water-limited forest, and in current light-limited forest with future rainfall < 2000ĝ€-mmĝ€-yrĝ'1. Author(s) 2016. |
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College of Life and Environmental Sciences, University of Exeter, Exeter, United Kingdom |
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Export Date: 20 May 2016 |
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Steidinger, B.S.; Crowther, T.W.; Liang, J.; Van Nuland, M.E.; Werner, G.D.A.; Reich, P.B.; Nabuurs, G.; de-Miguel, S.; Zhou, M.; Picard, N.; Herault, B.; Zhao, X.; Zhang, C.; Routh, D.; Peay, K.G.; Abegg, M.; Adou Yao, C.Y.; Alberti, G.; Almeyda Zambrano, A.; Alvarez-Davila, E.; Alvarez-Loayza, P.; Alves, L.F.; Ammer, C.; Antón-Fernández, C.; Araujo-Murakami, A.; Arroyo, L.; Avitabile, V.; Aymard, G.; Baker, T.; Bałazy, R.; Banki, O.; Barroso, J.; Bastian, M.; Bastin, J.-F.; Birigazzi, L.; Birnbaum, P.; Bitariho, R.; Boeckx, P.; Bongers, F.; Bouriaud, O.; Brancalion, P.H.S.; Brandl, S.; Brearley, F.Q.; Brienen, R.; Broadbent, E.; Bruelheide, H.; Bussotti, F.; Cazzolla Gatti, R.; Cesar, R.; Cesljar, G.; Chazdon, R.; Chen, H.Y.H.; Chisholm, C.; Cienciala, E.; Clark, C.J.; Clark, D.; Colletta, G.; Condit, R.; Coomes, D.; Cornejo Valverde, F.; Corral-Rivas, J.J.; Crim, P.; Cumming, J.; Dayanandan, S.; de Gasper, A.L.; Decuyper, M.; Derroire, G.; DeVries, B.; Djordjevic, I.; Iêda, A.; Dourdain, A.; Obiang, N.L.E.; Enquist, B.; Eyre, T.; Fandohan, A.B.; Fayle, T.M.; Feldpausch, T.R.; Finér, L.; Fischer, M.; Fletcher, C.; Fridman, J.; Frizzera, L.; Gamarra, J.G.P.; Gianelle, D.; Glick, H.B.; Harris, D.; Hector, A.; Hemp, A.; Hengeveld, G.; Herbohn, J.; Herold, M.; Hillers, A.; Honorio Coronado, E.N.; Huber, M.; Hui, C.; Cho, H.; Ibanez, T.; Jung, I.; Imai, N.; Jagodzinski, A.M.; Jaroszewicz, B.; Johannsen, V.; Joly, C.A.; Jucker, T.; Karminov, V.; Kartawinata, K.; Kearsley, E.; Kenfack, D.; Kennard, D.; Kepfer-Rojas, S.; Keppel, G.; Khan, M.L.; Killeen, T.; Kim, H.S.; Kitayama, K.; Köhl, M.; Korjus, H.; Kraxner, F.; Laarmann, D.; Lang, M.; Lewis, S.; Lu, H.; Lukina, N.; Maitner, B.; Malhi, Y.; Marcon, E.; Marimon, B.S.; Marimon-Junior, B.H.; Marshall, A.R.; Martin, E.; Martynenko, O.; Meave, J.A.; Melo-Cruz, O.; Mendoza, C.; Merow, C.; Monteagudo Mendoza, A.; Moreno, V.; Mukul, S.A.; Mundhenk, P.; Nava-Miranda, M.G.; Neill, D.; Neldner, V.; Nevenic, R.; Ngugi, M.; Niklaus, P.; Oleksyn, J.; Ontikov, P.; Ortiz-Malavasi, E.; Pan, Y.; Paquette, A.; Parada-Gutierrez, A.; Parfenova, E.; Park, M.; Parren, M.; Parthasarathy, N.; Peri, P.L.; Pfautsch, S.; Phillips, O.; Piedade, M.T.; Piotto, D.; Pitman, N.C.A.; Polo, I.; Poorter, L.; Poulsen, A.D.; Poulsen, J.R.; Pretzsch, H.; Ramirez Arevalo, F.; Restrepo-Correa, Z.; Rodeghiero, M.; Rolim, S.; Roopsind, A.; Rovero, F.; Rutishauser, E.; Saikia, P.; Saner, P.; Schall, P.; Schelhaas, M.-J.; Schepaschenko, D.; Scherer-Lorenzen, M.; Schmid, B.; Schöngart, J.; Searle, E.; Seben, V.; Serra-Diaz, J.M.; Salas-Eljatib, C.; Sheil, D.; Shvidenko, A.; Silva-Espejo, J.; Silveira, M.; Singh, J.; Sist, P.; Slik, F.; Sonké, B.; Souza, A.F.; Stereńczak, K.; Svenning, J.-C.; Svoboda, M.; Targhetta, N.; Tchebakova, N.; Steege, H.; Thomas, R.; Tikhonova, E.; Umunay, P.; Usoltsev, V.; Valladares, F.; van der Plas, F.; Van Do, T.; Vasquez Martinez, R.; Verbeeck, H.; Viana, H.; Vieira, S.; von Gadow, K.; Wang, H.-F.; Watson, J.; Westerlund, B.; Wiser, S.; Wittmann, F.; Wortel, V.; Zagt, R.; Zawila-Niedzwiecki, T.; Zhu, Z.-X.; Zo-Bi, I.C.; GFBI consortium |
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Title |
Climatic controls of decomposition drive the global biogeography of forest-tree symbioses |
Type |
Journal Article |
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Year |
2019 |
Publication |
Nature |
Abbreviated Journal |
Nature |
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Volume |
569 |
Issue |
7756 |
Pages |
404-408 |
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Keywords |
Fungi |
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The identity of the dominant root-associated microbial symbionts in a forest determines the ability of trees to access limiting nutrients from atmospheric or soil pools 1,2 , sequester carbon 3,4 and withstand the effects of climate change 5,6 . Characterizing the global distribution of these symbioses and identifying the factors that control this distribution are thus integral to understanding the present and future functioning of forest ecosystems. Here we generate a spatially explicit global map of the symbiotic status of forests, using a database of over 1.1 million forest inventory plots that collectively contain over 28,000 tree species. Our analyses indicate that climate variables—in particular, climatically controlled variation in the rate of decomposition—are the primary drivers of the global distribution of major symbioses. We estimate that ectomycorrhizal trees, which represent only 2% of all plant species 7 , constitute approximately 60% of tree stems on Earth. Ectomycorrhizal symbiosis dominates forests in which seasonally cold and dry climates inhibit decomposition, and is the predominant form of symbiosis at high latitudes and elevation. By contrast, arbuscular mycorrhizal trees dominate in aseasonal, warm tropical forests, and occur with ectomycorrhizal trees in temperate biomes in which seasonally warm-and-wet climates enhance decomposition. Continental transitions between forests dominated by ectomycorrhizal or arbuscular mycorrhizal trees occur relatively abruptly along climate-driven decomposition gradients; these transitions are probably caused by positive feedback effects between plants and microorganisms. Symbiotic nitrogen fixers—which are insensitive to climatic controls on decomposition (compared with mycorrhizal fungi)—are most abundant in arid biomes with alkaline soils and high maximum temperatures. The climatically driven global symbiosis gradient that we document provides a spatially explicit quantitative understanding of microbial symbioses at the global scale, and demonstrates the critical role of microbial mutualisms in shaping the distribution of plant species. © 2019, The Author(s), under exclusive licence to Springer Nature Limited. |
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Faculty of Environmental Sciences and Natural Resource Management, Norwegian University of Life Sciences, Ås, Norway |
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Nature Publishing Group |
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00280836 (Issn) |
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EcoFoG @ webmaster @ |
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872 |
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Picard, N.; Mortier, F.; Rossi, V.; Gourlet-Fleury, S. |
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Title |
Clustering species using a model of population dynamics and aggregation theory |
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Journal Article |
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Year |
2010 |
Publication |
Ecological Modelling |
Abbreviated Journal |
Ecol. Model. |
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221 |
Issue |
2 |
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152-160 |
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Aggregation theory; Species grouping; Species richness; Tropical rainforest; Usher model |
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The high species diversity of some ecosystems like tropical rainforests goes in pair with the scarcity of data for most species. This hinders the development of models that require enough data for fitting. The solution commonly adopted by modellers consists in grouping species to form more sizeable data sets. Classical methods for grouping species such as hierarchical cluster analysis do not take account of the variability of the species characteristics used for clustering. In this study a clustering method based on aggregation theory is presented. It takes account of the variability of species characteristics by searching for the grouping that minimizes the quadratic error (square bias plus variance) of some model's prediction. This method allows one to check whether the gain in variance brought by data pooling compensate for the bias that it introduces. This method was applied to a data set on 94 tree species in a tropical rainforest in French Guiana, using a Usher matrix model to predict species dynamics. An optimal trade-off between bias and variance was found when grouping species. Grouping species appeared to decrease the quadratic error, except when the number of groups was very small. This clustering method yielded species groups similar to those of the hierarchical cluster analysis using Ward's method when variance was small, that is when the number of groups was small. (C) 2009 Elsevier B.V. All rights reserved. |
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[Picard, Nicolas; Mortier, Frederic; Rossi, Vivien; Gourlet-Fleury, Sylvie] CIRAD, F-34398 Montpellier 5, France, Email: nicolas.picard@cirad.fr |
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ELSEVIER SCIENCE BV |
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0304-3800 |
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ISI:000273628800004 |
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EcoFoG @ eric.marcon @ |
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85 |
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Luyssaert, S.; Inglima, I.; Jung, M.; Richardson, A.D.; Reichsteins, M.; Papale, D.; Piao, S.L.; Schulzes, E.D.; Wingate, L.; Matteucci, G.; Aragao, L.; Aubinet, M.; Beers, C.; Bernhoffer, C.; Black, K.G.; Bonal, D.; Bonnefond, J.M.; Chambers, J.; Ciais, P.; Cook, B.; Davis, K.J.; Dolman, A.J.; Gielen, B.; Goulden, M.; Grace, J.; Granier, A.; Grelle, A.; Griffis, T.; Grunwald, T.; Guidolotti, G.; Hanson, P.J.; Harding, R.; Hollinger, D.Y.; Hutyra, L.R.; Kolar, P.; Kruijt, B.; Kutsch, W.; Lagergren, F.; Laurila, T.; Law, B.E.; Le Maire, G.; Lindroth, A.; Loustau, D.; Malhi, Y.; Mateus, J.; Migliavacca, M.; Misson, L.; Montagnani, L.; Moncrieff, J.; Moors, E.; Munger, J.W.; Nikinmaa, E.; Ollinger, S.V.; Pita, G.; Rebmann, C.; Roupsard, O.; Saigusa, N.; Sanz, M.J.; Seufert, G.; Sierra, C.; Smith, M.L.; Tang, J.; Valentini, R.; Vesala, T.; Janssens, I.A. |
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Title |
CO2 balance of boreal, temperate, and tropical forests derived from a global database |
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Journal Article |
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Year |
2007 |
Publication |
Global Change Biology |
Abbreviated Journal |
Glob. Change Biol. |
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13 |
Issue |
12 |
Pages |
2509-2537 |
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carbon cycle; CO2; forest ecosystems; global database; gross primary productivity; net ecosystem productivity; net primary productivity |
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Terrestrial ecosystems sequester 2.1 Pg of atmospheric carbon annually. A large amount of the terrestrial sink is realized by forests. However, considerable uncertainties remain regarding the fate of this carbon over both short and long timescales. Relevant data to address these uncertainties are being collected at many sites around the world, but syntheses of these data are still sparse. To facilitate future synthesis activities, we have assembled a comprehensive global database for forest ecosystems, which includes carbon budget variables (fluxes and stocks), ecosystem traits (e.g. leaf area index, age), as well as ancillary site information such as management regime, climate, and soil characteristics. This publicly available database can be used to quantify global, regional or biome-specific carbon budgets; to re-examine established relationships; to test emerging hypotheses about ecosystem functioning [e.g. a constant net ecosystem production (NEP) to gross primary production (GPP) ratio]; and as benchmarks for model evaluations. In this paper, we present the first analysis of this database. We discuss the climatic influences on GPP, net primary production (NPP) and NEP and present the CO2 balances for boreal, temperate, and tropical forest biomes based on micrometeorological, ecophysiological, and biometric flux and inventory estimates. Globally, GPP of forests benefited from higher temperatures and precipitation whereas NPP saturated above either a threshold of 1500 mm precipitation or a mean annual temperature of 10 degrees C. The global pattern in NEP was insensitive to climate and is hypothesized to be mainly determined by nonclimatic conditions such as successional stage, management, site history, and site disturbance. In all biomes, closing the CO2 balance required the introduction of substantial biome-specific closure terms. Nonclosure was taken as an indication that respiratory processes, advection, and non-CO2 carbon fluxes are not presently being adequately accounted for. |
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Univ Antwerp, Dept Biol, B-2610 Antwerp, Belgium, Email: Sebastiaan.Luyssaert@ua.ac.be |
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BLACKWELL PUBLISHING |
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1354-1013 |
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ISI:000251049000004 |
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EcoFoG @ eric.marcon @ |
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151 |
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Siebicke, L.; Steinfeld, G.; Foken, T. |
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Title |
CO2-gradient measurements using a parallel multi-analyzer setup |
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Journal Article |
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2011 |
Publication |
Atmospheric Measurement Techniques |
Abbreviated Journal |
Atmos. Meas. Tech. |
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4 |
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3 |
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409-423 |
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Accurate CO2 concentration gradient measurements are needed for the computation of advective flux terms, which are part of the full Net Ecosystem Exchange (NEE) budget equation. A typical draw back of current gradient measurement designs in advection research is the inadequate sampling of complex flow phenomena using too few observation points in space and time. To overcome this draw back, a new measurement design is presented which allows the parallel measurement of several sampling points at a high frequency. Due to the multi-analyzer nature of the design, inter-instrument bias becomes more of a concern compared to conventional setups. Therefore a statistical approach is presented which allows for accurate observations of concentration gradients, which are typically small in relation to analyzer accuracy, to be obtained. This bias correction approach applies a conditional, time dependent signal correction. The correction depends on a mixing index based on cross correlation analysis, which characterizes the degree of mixing of the atmosphere between individual sample points. The approach assumes statistical properties of probability density functions (pdf) of concentration differences between a sample point and the field average which are common to the pdf's from several sample points. The applicability of the assumptions made was tested by Large Eddy Simulation (LES) using the model PALM and could be verified for a test case of well mixed conditions. The study presents concentration time series before and after correction, measured at a 2 m height in the sub-canopy at the FLUXNET spruce forest site Waldstein-Weidenbrunnen (DE-Bay), analyzes the dependence of statistical parameters of pdf's from atmospheric parameters such as stratification, quantifies the errors and evaluates the performance of the bias correction approach. The improvements that are achieved by applying the bias correction approach are one order of magnitude larger than possible errors associated with it, which is a strong incentive to use the correction approach. In conclusion, the presented bias correction approach is well suited for – but not limited to – horizontal gradient measurements in a multi-analyzer setup, which would not have been reliable without this approach. Finally, possible future improvements of the bias correction approach are outlined and further fields of application indicated. |
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[Siebicke, L.; Foken, T.] Univ Bayreuth, Dept Micrometeorol, Bayreuth, Germany, Email: lukas.siebicke@ecofog.gf |
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Copernicus Gesellschaft Mbh |
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1867-1381 |
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ISI:000288911000002 |
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EcoFoG @ webmaster @ |
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303 |
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Charles-Dominique, P.; Chave, J.; Dubois, M.A.; De Granville, J.J.; Riera, B.; Vezzoli, C. |
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Title |
Colonization front of the understorey palm Astrocaryum sciophilum in a pristine rain forest of French Guiana |
Type |
Journal Article |
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Year |
2003 |
Publication |
Global Ecology and Biogeography |
Abbreviated Journal |
Glob. Ecol. Biogeogr. |
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12 |
Issue |
3 |
Pages |
237-248 |
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Astrocaryum sciophilum; French Guiana; neotropical palaeoecology; palm ecology; population edge; refuges; scatter-hoarding; seed dispersal; spatial pattern |
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Aims Astrocaryum sciophilum (Miq.) Pulle (Arecaceae) is an understorey palm, endemic to north-eastern South America with a patchy distribution. We tested the hypothesis that the spatial distribution of this palm species is not in equilibrium but is slowly colonizing the forest understorey. Location Inventories and seed dispersal studies were conducted in the undisturbed tropical forest close to the Nouragues research station, French Guiana. Additional data were collected in the entire territory of French Guiana. Methods We studied the demography of A. sciophilum on a 20-ha plot located at the edge of its distribution. The age of the palms was estimated by postulating an exponentially decreasing abundance by age class. Direct seed dispersal experiments were also conducted, to estimate dispersal parameters. The seeds of A. sciophilum were dispersed only by rodents. This information was used to parameterize a forest growth simulator, to study the spatial spread of this species. Results Within the sampling plot, the density of A. sciophilum dropped sharply from about 500 individuals per hectare to zero. The maturation age was estimated to be 170+/-70 years, and over 55 years with 95% confidence. Seed-dispersal experiments yielded an average seed dispersal distance of 11 m and a maximum estimated dispersal distance of 125 m across a generational span of 55 years to maturity. Therefore, the maximal estimated colonization speed is 2.3 m/y. Conclusions Empirical results and numerical simulations suggest that the boundary of the A. sciophilum population is a colonization front, and that the range of this species is slowly expanding. The implications of this result in respect of palaeoenvironmental changes in this region are discussed. |
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Natl Museum Nat Hist, Lab Ecol Gen, F-91800 Brunoy, France |
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BLACKWELL PUBLISHING LTD |
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0960-7447 |
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ISI:000182184100006 |
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EcoFoG @ eric.marcon @ |
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273 |
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Amusant, N.; Fournier, M.; Beauchene, J. |
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Title |
Colour and decay resistance and its relationships in Eperua grandiflora |
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Journal Article |
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Year |
2008 |
Publication |
Annals of Forest Science |
Abbreviated Journal |
Ann. For. Sci. |
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Volume |
65 |
Issue |
8 |
Pages |
806 |
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natural durability; colour; decay resistance; variability; heartwood; tropical wood |
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Abstract |
Eperua grandiflora, which is widely distributed in the French Guiana forest region, shows high variability in decay resistance. Further information concerning this wood quality parameter is necessary, but standard testing methods are complex and time-consuming. We assessed the use of colorimetry to determine durability in heartwood samples from a range of trees. Eperua grandiflora colour parameters were measured using a CIELAB system, revealing that the tree effect was greater than the radial position and height effects. The wood samples were exposed to Coriolus versicolor and Antrodia sp. according to two European standards (En 350-1 and XP CEN TS 15083-1). Eperua grandiflora is more susceptible to brown rot. These two standards did not give the same durability classes. The high variation in natural durability was due to the tree effect. These two properties were found to be correlated and the assessment also distinguished the extreme durability classes but they are not sufficient to classify the class of durability of this species. |
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[Amusant, Nadine] CIRAD, PERSYT, UR Valorisat Bois Tropicaux, F-34538 Montpellier 5, France, Email: nadine.amusant@cirad.fr |
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EDP SCIENCES S A |
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1286-4560 |
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ISI:000261431600006 |
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EcoFoG @ eric.marcon @ |
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127 |
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Author |
Aili, S.R.; Touchard, A.; Petitclerc, F.; Dejean, A.; Orivel, J.; Padula, M.P.; Escoubas, P.; Nicholson, G.M. |
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Combined Peptidomic and Proteomic Analysis of Electrically Stimulated and Manually Dissected Venom from the South American Bullet Ant Paraponera clavata |
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Journal Article |
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2017 |
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Journal of Proteome Research |
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J. Proteome Res. |
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16 |
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3 |
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1339-1351 |
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Ants have evolved venoms rich in peptides and proteins used for predation, defense, and communication. However, they remain extremely understudied due to the minimal amount of venom secreted by each ant. The present study investigated the differences in the proteome and peptidome of the venom from the bullet ant, Paraponera clavata. Venom samples were collected from a single colony either by manual venom gland dissection or by electrical stimulation and were compared using proteomic methods. Venom proteins were separated by 2D-PAGE and identified by nanoLC-ESI-QTOF MS/MS. Venom peptides were initially separated using C18 reversed-phase high-performance liquid chromatography, then analyzed by MALDI-TOF MS. The proteomic analysis revealed numerous proteins that could be assigned a biological function (total 94), mainly as toxins, or roles in cell regulation and transport. This investigation found that ca. 73% of the proteins were common to venoms collected by the two methods. The peptidomic analysis revealed a large number of peptides (total 309) but with <20% shared by the two collection methods. There was also a marked difference between venoms obtained by venom gland dissection from different ant colonies. These findings demonstrate the rich composition and variability of P. clavata venom. |
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American Chemical Society |
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1535-3893 |
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EcoFoG @ webmaster @ |
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746 |
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Van Langenhove, Leandro ; Depaepe, Thomas ; Verryckt, Lore T. ; Fuchslueger, Lucia ; Donald, Julian ; Celine, Leroy ; Krishna Moorthy, Sruthi M. ; Gargallo-Garriga, Albert ; Farnon Ellwood, M. D.; Verbeeck, Hans ; Van Der Straeten, Dominique ; Penuelas, Josep ; Janssens, Ivan A. |
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Comparable canapy and soil free living nitrogen fixation rates in e lowland tropical forest |
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Journal Article |
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2021 |
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Science of the total environment |
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754 |
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Biodiversité ; Systématique ; phylogénie ; taxonomie ; Ecologie, Environnement ; Ecosystèmes ; Biologie végétale ; Botanique ; Biodiversité |
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Biological nitrogen fixation (BNF) is a fundamental part of nitrogen cycling in tropical forests, yet little is known about the contribution made by free-living nitrogen fixers inhabiting the often-extensive forest canopy. We used the acetylene reduction assay, calibrated with 15N2, to measure free-living BNF on forest canopy leaves, vascular epiphytes, bryophytes and canopy soil, as well as on the forest floor in leaf litter and soil. We used a combination of calculated and published component densities to upscale free-living BNF rates to the forest level. We found that bryophytes and leaves situated in the canopy in particular displayed high mass-based rates of free-living BNF. Additionally, we calculated that nearly 2 kg of nitrogen enters the forest ecosystem through free-living BNF every year, 40% of which was fixed by the various canopy components. Our results reveal that in the studied tropical lowland forest a large part of the nitrogen input through free-living BNF stems from the canopy, but also that the total nitrogen inputs by free-living BNF are lower than previously thought and comparable to the inputs of reactive nitrogen by atmospheric deposition. |
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Elsevier |
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Anglais |
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EcoFoG @ webmaster @ |
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1006 |
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Birer, C.; Tysklind, N.; Zinger, L.; Duplais, C. |
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Comparative analysis of DNA extraction methods to study the body surface microbiota of insects: A case study with ant cuticular bacteria |
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2017 |
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Molecular Ecology Resources |
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Mol Ecol Resour |
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17 |
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6 |
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e34-e45 |
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16S rRNA; bacterial communities; cuticular microbiome; insect cuticle; metabarcoding |
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High-throughput sequencing of the 16S rRNA gene has considerably helped revealing the essential role of bacteria living on insect cuticles in the ecophysiology and behaviour of their hosts. However, our understanding of host-cuticular microbiota feedbacks remains hampered by the difficulties of working with low bacterial DNA quantities as with individual insect cuticle samples, which are more prone to molecular biases and contaminations. Herein, we conducted a methodological benchmark on the cuticular bacterial loads retrieved from two Neotropical ant species of different body size and ecology: Atta cephalotes (~15 mm) and Pseudomyrmex penetrator (~5 mm). We evaluated the richness and composition of the cuticular microbiota, as well as the amount of biases and contamination produced by four DNA extraction protocols. We also addressed how bacterial community characteristics would be affected by the number of individuals or individual body size used for DNA extraction. Most extraction methods yielded similar results in terms of bacterial diversity and composition for A. cephalotes (~15 mm). In contrast, greater amounts of artefactual sequences and contaminations, as well as noticeable differences in bacterial community characteristics were observed between extraction methods for P. penetrator (~5 mm). We also found that large (~15 mm) and small (~5 mm) A. cephalotes individuals harbour different bacterial communities. Our benchmark suggests that cuticular microbiota of single individual insects can be reliably retrieved provided that blank controls, appropriate data cleaning, and individual body size and functional role within insect society are considered in the experiment. |
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1755-0998 |
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EcoFoG @ webmaster @ |
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781 |
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