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| Author |
Talaga, S.; Leroy, C.; Guidez, A.; Dusfour, I.; Girod, R.; Dejean, A.; Murienne, J. |
Title  |
DNA reference libraries of French Guianese mosquitoes for barcoding and metabarcoding |
Type |
Journal Article |
| Year |
2017 |
Publication |
PLoS ONE |
Abbreviated Journal |
PLoS ONE |
| Volume |
12 |
Issue |
6 |
Pages |
e0176993 |
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| Abstract |
The mosquito family (Diptera: Culicidae) constitutes the most medically important group of arthropods because certain species are vectors of human pathogens. In some parts of the world, the diversity is so high that the accurate delimitation and/or identification of species is challenging. A DNA-based identification system for all animals has been proposed, the socalled DNA barcoding approach. In this study, our objectives were (i) to establish DNA barcode libraries for the mosquitoes of French Guiana based on the COI and the 16S markers, (ii) to compare distance-based and tree-based methods of species delimitation to traditional taxonomy, and (iii) to evaluate the accuracy of each marker in identifying specimens. A total of 266 specimens belonging to 75 morphologically identified species or morphospecies were analyzed allowing us to delimit 86 DNA clusters with only 21 of them already present in the BOLD database. We thus provide a substantial contribution to the global mosquito barcoding initiative. Our results confirm that DNA barcodes can be successfully used to delimit and identify mosquito species with only a few cases where the marker could not distinguish closely related species. Our results also validate the presence of new species identified based on morphology, plus potential cases of cryptic species. We found that both COI and 16S markers performed very well, with successful identifications at the species level of up to 98% for COI and 97% for 16S when compared to traditional taxonomy. This shows great potential for the use of metabarcoding for vector monitoring and eco-epidemiological studies. © 2017 Talaga et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
| Address |
UMR EDB, CNRS, ENFA, Université de Toulouse Paul Sabatier, Toulouse, France |
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Export Date: 22 June 2017 |
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EcoFoG @ webmaster @ |
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757 |
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Chartier, M.; Pélozuelo, L.; Gibernau, M. |
| Title |
Do floral odor profiles geographically vary with the degree of specificity for pollinators? Investigation in two sapromyophilous Arum species (Araceae) |
Type |
Journal Article |
| Year |
2011 |
Publication |
Annales de la Societe Entomologique de France |
Abbreviated Journal |
Ann. Soc. Entomol. Fr. |
| Volume |
47 |
Issue |
1-2 |
Pages |
71-77 |
| Keywords |
Arum italicum; Arum maculatum; Floral scent; Psychodidae; Specificity |
| Abstract |
We compared floral odour profiles among populations of two Arum species which show different degrees of specificity for their fly pollinators. Insects were collected from inflorescences in four populations of Arum italicum and two populations of Arum maculatum. In six Arum populations, we compared inflorescences odour profiles collected by Solid Phase Micro Extraction (SPME) and analysed by gas chromatography. We confirmed that from a pollination point of view, A. italicum is an opportunist species, as it is mainly pollinated by insects of the families Psychodidae, Chironomidae and Sciaridae, whereas A. maculatum is a specialist species, as it is 90% pollinated by Psychodidae. In all populations, Arum italicum was less attractive to pollinators than Arum maculatum. Floral odour profiles of A. italicum were not geographically structured among populations, suggesting a high gene flow or adaptation to a fluctuant guild of pollinators. On the contrary, odour profiles of A. maculatum varied between the two populations studied suggesting a lower gene flow or adaptation to different local pollinator preferences. |
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CNRS – Ecofog (UMR 8172), BP709, F-97387 Kourou, France |
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00379271 (Issn) |
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Export Date: 26 October 2011; Source: Scopus; Language of Original Document: English; Correspondence Address: Chartier, M.; Université Paul Sabatier, Laboratoire Evolution and Diversité Biologique (UMR 5174), Bât. 4R3-B2, F-31062 Toulouse cedex 9, France; email: chartier.marion@gmail.com |
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EcoFoG @ webmaster @ |
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366 |
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Ruiz-González, M.X.; Leroy, C.; Dejean, A.; Gryta, H.; Jargeat, P.; Carrión, A.D.A.; Orivel, J. |
| Title |
Do host plant and associated ant species affect microbial communities in myrmecophytes? |
Type |
Journal Article |
| Year |
2019 |
Publication |
Insects |
Abbreviated Journal |
Insects |
| Volume |
10 |
Issue |
11 |
Pages |
391 |
| Keywords |
Allomerus decemarticulatus; Allomerus octoarticulatus; Azteca sp; Cf; Cordia nodosa; Depilis; Domatia; Hirtella physophora; Microbial diversity |
| Abstract |
Ant-associated microorganisms can play crucial and often overlooked roles, and given the diversity of interactions that ants have developed, the study of the associated microbiomes is of interest. We focused here on specialist plant-ant species of the genus Allomerus that grow a fungus to build galleries on their host-plant stems. Allomerus-inhabited domatia, thus, might be a rich arena for microbes associated with the ants, the plant, and the fungus. We investigated the microbial communities present in domatia colonised by four arboreal ants: Allomerus decemarticulatus, A. octoarticulatus, A. octoarticulatus var. demerarae, and the non-fungus growing plant-ant Azteca sp. cf. depilis, inhabiting Hirtella physophora or Cordia nodosa in French Guiana. We hypothesized that the microbial community will differ among these species. We isolated microorganisms from five colonies of each species, sequenced the 16S rRNA or Internal TranscribedSpacer (ITS) regions, and described both the alpha and beta diversities. We identified 69 microbial taxa, which belong to five bacterial and two fungal phyla. The most diverse phyla were Proteobacteria and Actinobacteria. The microbial community of Azteca cf. depilis and Allomerus spp. differed in composition and richness. Geographical distance affected microbial communities and richness but plant species did not. Actinobacteria were only associated with Allomerus spp. |
| Address |
Biodiversity Genomics Team, Plant Ecophysiology & Evolution Group, Guangxi Key Laboratory of Forest Ecology and Conservation, College of Forestry, Daxuedonglu 100, Nanning, Guangxi 530005, China |
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Mdpi Ag |
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20754450 (Issn) |
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Export Date: 18 November 2019; Correspondence Address: Ruiz-González, M.X.; Departamento de Ciencias Biológicas, Universidad Técnica Particular de Loja, San Cayetano Alto s/n, Ecuador; email: marioxruizgonzalez@gmail.com |
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no |
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EcoFoG @ webmaster @ |
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896 |
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Bereau, M.; Bonal, D.; Louisanna, E.; Garbaye, J. |
| Title |
Do mycorrhizas improve tropical tree seedling performance under water stress and low light conditions? A case study with Dicorynia guianensis (Caesalpiniaceae) |
Type |
Journal Article |
| Year |
2005 |
Publication |
Journal of Tropical Ecology |
Abbreviated Journal |
J. Trop. Ecol. |
| Volume |
21 |
Issue |
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Pages |
375-381 |
| Keywords |
French Guiana; leaf gas exchange; mycorrhizal symbiosis; tropical forest; water limitation |
| Abstract |
We tested the response of seedlings of Diconyina guianensis, a major timber tree species of French Guiana, to mycorrhizal symbiosis and water limitation in a semi-con trolled experiment under natural light conditions. Under well-watered conditions, mycorrhizal colonization resulted in an increase of net photosynthesis, growth and phosphorus uptake. When submitted to water stress, no growth reduction of mycorrhizal seedlings was observed. Mycorrhizal seedlings were more sensitive to drought than non-mycorrhizal ones in terms of carbon assimilation, but not with regard to stomatal closure. In contrast to previous studies on temperate tree seedlings, this result precludes a mycorrhizal effect on the hydraulic properties of this species. Furthermore, our results suggest that below a specific threshold of soil moisture, carbon assimilation of D. guianensis seedlings was decreased by the mycorrhizal symbiosis. This is probably related to the competition between the plant and its host fungus for carbon allocation under low light intensity, even though it did not seem to have a significant effect on mortality in our experiment. |
| Address |
UMR Ecofog, Kourou 97387, French Guiana, Email: bercau.m@kourou.cirad.fr |
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CAMBRIDGE UNIV PRESS |
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0266-4674 |
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ISI:000231009300003 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
232 |
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Brechet, L.; Ponton, S.; Roy, J.; Freycon, V.; Couteaux, M.M.; Bonal, D.; Epron, D. |
| Title |
Do tree species characteristics influence soil respiration in tropical forests? A test based on 16 tree species planted in monospecific plots |
Type |
Journal Article |
| Year |
2009 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
| Volume |
319 |
Issue |
1-2 |
Pages |
235-246 |
| Keywords |
Fine root; Litter quality; Nutrient cycling; Plant soil interactions; Soil respiration; Tropical plantations |
| Abstract |
The high spatial variability of soil respiration in tropical rainforests is well evaluated, but influences of biotic factors are not clearly understood. This study underlines the influence of tree species characteristics on soil respiration across a 16-monospecific plot design in a tropical plantation of French Guiana. A large variability of soil CO2 fluxes was observed among plots (i.e. 2.8 to 6.8 μmol m(-2) s(-1)) with the ranking being constant across seasons. There were no significant relationships between soil respiration and soil moisture or soil temperature, neither spatially, nor seasonally. The variability of soil respiration was mainly explained by quantitative factors such as leaf litterfall and basal area. Surprisingly, no significant relationship was observed between soil respiration and root biomass. However, the influence of substrate quality was revealed by a strong relationship between soil respiration and litterfall P (and litterfall N, to a lesser extent). |
| Address |
[Ponton, Stephane] Natl Inst Agr Res INRA Ctr Rech Nancy, Forest Ecol & Ecophysiol Unit, UMR EEF, F-54280 Seichamps, France, Email: ponton@nancy.inra.fr |
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SPRINGER |
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0032-079X |
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ISI:000266143400020 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
110 |
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Dejean, A.; Petitclerc, F.; Roux, O.; Orivel, J.; Leroy, C. |
| Title |
Does exogenic food benefit both partners in an ant-plant mutualism? the case of Cecropia obtusa and its guest Azteca plant-ants |
Type |
Journal Article |
| Year |
2012 |
Publication |
Comptes Rendus Biologies |
Abbreviated Journal |
C. R. Biol. |
| Volume |
335 |
Issue |
3 |
Pages |
214-219 |
| Keywords |
Ant-plant mutualisms; Azteca; Cecropia obtusa; Myrmecotrophy; Stable isotopes |
| Abstract |
In the mutualisms involving the myrmecophyte Cecropia obtusa and Azteca ovaticeps or A. alfari, both predatory, the ants defend their host trees from enemies and provide them with nutrients (myrmecotrophy). A. ovaticeps provisioned with prey and then 15N-enriched food produced more individuals than did control colonies (not artificially provisioned). This was not true for A. alfari colonies, possibly due to differences in the degree of maturity of the colonies for the chosen range of host tree sizes (less than 3 m in height). Myrmecotrophy was demonstrated for both Azteca species as provisioning the ants with 15N-enriched food translated into higher δ 15N values in host plant tissues, indicating that nitrogen passed from the food to the plant. Thus, the predatory activity of their guest ants benefits the Cecropia trees not only because the ants protect them from defoliators since most prey are phytophagous insects but also because the plant absorbs nutrients. © 2012 Académie des sciences. Published by Elsevier Masson SAS. All rights reserved. |
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IRD, Maladies Infectieuses et Vecteurs, Équipe BEES-IRD, BP 171, Bobo-Dioulasso, Burkina Faso |
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16310691 (Issn) |
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Export Date: 15 April 2012; Source: Scopus; Coden: Crboc; doi: 10.1016/j.crvi.2012.01.002; Language of Original Document: English; Correspondence Address: Dejean, A.; CNRS, Écologie des Forêts de Guyane (UMR-CNRS 8172), Campus Agronomique, 97379 Kourou cedex, France; email: alain.dejean@wanadoo.fr |
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no |
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EcoFoG @ webmaster @ |
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391 |
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Coste, S.; Roggy, J.C.; Garraud, L.; Heuret, P.; Nicolini, E.; Dreyer, E. |
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Does ontogeny modulate irradiance-elicited plasticity of leaf traits in saplings of rain-forest tree species? A test with Dicorynia guianensis and Tachigali melinonii (Fabaceae, Caesalpinioideae) |
Type |
Journal Article |
| Year |
2009 |
Publication |
Annals of Forest Science |
Abbreviated Journal |
Ann. For. Sci. |
| Volume |
66 |
Issue |
7 |
Pages |
701-709 |
| Keywords |
plant architecture; phenotypic plasticity; photosynthetic capacity; leaf structure; tropical rain forest |
| Abstract |
Irradiance elicits a large plasticity in leaf traits, but little is known about the modulation of this plasticity by ontogeny. Interactive effects of relative irradiance and ontogeny were assessed on leaf traits for two tropical rainforest tree species: Dicorynia guianensis Amshoff and Tachigali melinonii (Harms) Barneby (Fabaceae, Caesalpinioideae). Eleven morphological and physiological leaf traits, relative to photosynthetic performance, were measured on saplings at three different architectural development stages (ASD 1, 2 and 3) and used to derive composite traits like photosynthetic N-use efficiency. Measurements were made along a natural irradiance gradient. The effect of ASD was very visible and differed between the two species. For Dicorynia guianensis, only leaf mass-per-area (LMA) significantly increased with ASDs whereas for Tachigali melinonii, almost all traits were affected by ASD: LMA, leaf N content and photosynthetic capacity increased from ASD 1 to ASD 3. Photosynthetic N-use-efficiency was not affected by ASD in any species. Leaf traits were severely modulated by irradiance, whereas the degree of plasticity was very similar among ASDs. Only few interactions were detected between irradiance and ASD, for leaf thickness, carbon content, and the ratio Chl/N in T. melinonii and for photosynthetic capacity in D. guianensis. We conclude that ontogenic development and irradiance-elicited plasticity modulated leaf traits, with almost no interaction, i.e., the degree of irradiance-elicited plasticity was stable across development stages and independent of ontogeny in these two species, at least in the early stages of development assessed here. |
| Address |
[Dreyer, Erwin] INRA, UMR Ecol & Ecophysiol Forestieres 1137, F-54280 Champenoux, France, Email: dreyer@nancy.inra.fr |
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EDP SCIENCES S A |
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1286-4560 |
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ISI:000270906600009 |
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no |
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EcoFoG @ eric.marcon @ |
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100 |
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Bréchet, L.; Ponton, S.; Alméras, T.; Bonal, D.; Epron, D. |
| Title |
Does spatial distribution of tree size account for spatial variation in soil respiration in a tropical forest? |
Type |
Journal Article |
| Year |
2011 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
| Volume |
347 |
Issue |
1 |
Pages |
293-303 |
| Keywords |
Forest structure; Litterfall; Root mass; Soil respiration; Spatial variation; Tropical forest; aboveground production; forest inventory; litterfall; range size; size distribution; soil respiration; spatial distribution; spatial variation; stand dynamics; tropical forest |
| Abstract |
We explored the relationship between soil processes, estimated through soil respiration (Rsoil), and the spatial variation in forest structure, assessed through the distribution of tree size, in order to understand the determinism of spatial variations in Rsoil in a tropical forest. The influence of tree size was examined using an index (Ic) calculated for each tree as a function of (1) the trunk cross section area and (2) the distance from the measurement point. We investigated the relationships between Ic and litterfall, root mass and Rsoil, respectively. Strong significant relationships were found between Ic and both litterfall and root mass. Rsoil showed a large range of variations over the 1-ha experimental plot, from 1. 5 to 12. 6 gC m-2 d-1. The best relationship between Ic and Rsoil only explained 17% of the spatial variation in Rsoil. These results support the assumption that local spatial patterns in litter production and root mass depend on tree distribution in tropical forests. Our study also emphasizes the modest contribution of tree size distribution-which is mainly influenced by the presence of the biggest trees (among the large range size of the inventoried trees greater than 10 cm diameter at 1. 30 m above ground level or at 0. 5 m above the buttresses)-in explaining spatial variations in Rsoil. © 2011 Springer Science+Business Media B.V. |
| Address |
Nancy Université, Université Henri Poincaré, UMR 1137, Ecologie et Ecophysiologie Forestières, Faculté des Sciences, 54500 Vandoeuvre les Nancy, France |
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0032079x (Issn) |
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Export Date: 21 October 2011; Source: Scopus; Coden: Plsoa; doi: 10.1007/s11104-011-0848-1; Language of Original Document: English; Correspondence Address: Bréchet, L.; INRA, UMR Ecologie des Forêts de Guyane, Campus Agronomique, BP 709, 97387 Kourou cedex, French Guiana; email: laetitiabrechet@yahoo.fr |
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EcoFoG @ webmaster @ |
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345 |
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Gloor, M.; Phillips, O.L.; Lloyd, J.J.; Lewis, S.L.; Malhi, Y.; Baker, T.R.; Lopez-Gonzalez, G.; Peacock, J.; Almeida, S.; de Oliveira, A.C.A.; Alvarez, E.; Amaral, I.; Arroyo, L.; Aymard, G.; Banki, O.; Blanc, L.; Bonal, D.; Brando, P.; Chao, K.J.; Chave, J.; Davila, N.; Erwin, T.; Silva, J.; Di Fiore, A.; Feldpausch, T.R.; Freitas, A.; Herrera, R.; Higuchi, N.; Honorio, E.; Jimenez, E.; Killeen, T.; Laurance, W.; Mendoza, C.; Monteagudo, A.; Andrade, A.; Neill, D.; Nepstad, D.; Vargas, P.N.; Penuela, M.C.; Cruz, A.P.; Prieto, A.; Pitman, N.; Quesada, C.; Salomao, R.; Silveira, M.; Schwarz, M.; Stropp, J.; Ramirez, F.; Ramirez, H.; Rudas, A.; ter Steege, H.; Silva, N.; Torres, A.; Terborgh, J.; Vasquez, R.; van der Heijden, G. |
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Does the disturbance hypothesis explain the biomass increase in basin-wide Amazon forest plot data? |
Type |
Journal Article |
| Year |
2009 |
Publication |
Global Change Biology |
Abbreviated Journal |
Glob. Change Biol. |
| Volume |
15 |
Issue |
10 |
Pages |
2418-2430 |
| Keywords |
Amazon rainforest; carbon sink; disturbance; mortality; power law |
| Abstract |
Positive aboveground biomass trends have been reported from old-growth forests across the Amazon basin and hypothesized to reflect a large-scale response to exterior forcing. The result could, however, be an artefact due to a sampling bias induced by the nature of forest growth dynamics. Here, we characterize statistically the disturbance process in Amazon old-growth forests as recorded in 135 forest plots of the RAINFOR network up to 2006, and other independent research programmes, and explore the consequences of sampling artefacts using a data-based stochastic simulator. Over the observed range of annual aboveground biomass losses, standard statistical tests show that the distribution of biomass losses through mortality follow an exponential or near-identical Weibull probability distribution and not a power law as assumed by others. The simulator was parameterized using both an exponential disturbance probability distribution as well as a mixed exponential-power law distribution to account for potential large-scale blowdown events. In both cases, sampling biases turn out to be too small to explain the gains detected by the extended RAINFOR plot network. This result lends further support to the notion that currently observed biomass gains for intact forests across the Amazon are actually occurring over large scales at the current time, presumably as a response to climate change. |
| Address |
[Gloor, M.; Phillips, O. L.; Lloyd, J. J.; Lewis, S. L.; Baker, T. R.; Lopez-Gonzalez, G.; Peacock, J.; Feldpausch, T. R.] Univ Leeds, Sch Geog, Leeds LS2 9JT, W Yorkshire, England, Email: eugloor@googlemail.com |
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WILEY-BLACKWELL PUBLISHING, INC |
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1354-1013 |
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| Notes |
ISI:000269577800006 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
196 |
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Fanin, N.; Hattenschwiler, S.; Barantal, S.; Schimann, H.; Fromin, N. |
| Title |
Does variability in litter quality determine soil microbial respiration in an Amazonian rainforest? |
Type |
Journal Article |
| Year |
2011 |
Publication |
Soil Biology & Biochemistry |
Abbreviated Journal |
Soil Biol. Biochem. |
| Volume |
43 |
Issue |
5 |
Pages |
1014-1022 |
| Keywords |
Carbon forms; French Guiana; Litter quality; Microbial respiration process; Nitrogen; Phosphorus; Stoichiometry |
| Abstract |
Tree species-rich tropical rainforests are characterized by a highly variable quality of leaf litter input to the soil at small spatial scales. This diverse plant litter is a major source of energy and nutrients for soil microorganisms, particularly in rainforests developed on old and nutrient-impoverished soils. Here we tested the hypothesis that the variability in leaf litter quality produced by a highly diverse tree community determines the spatial variability of the microbial respiration process in the underlying soil. We analyzed a total of 225 litter-soil pairs from an undisturbed Amazonian rainforest in French Guiana using a hierarchical sampling design. The microbial respiration process was assessed using substrate-induced respiration (SIR) and compared to a wide range of quality parameters of the associated litter layer (litter nutrients, carbon forms, stoichiometry, litter mass and pH). The results show that the variability of both litter quality and SIR rates was more important at large than at small scales. SIR rates varied between 1.1 and 4.0 μg h(-1) and were significantly correlated with litter layer quality (up to 50% of the variability explained by the best mixed linear model). Total litter P content was the individual most important factor explaining the observed spatial variation in soil SIR, with higher rates associated to high litter P. SIR rates also correlated positively with total litter N content and with increasing proportions of labile C compounds. However, contrary to our expectation, SIR rates were not related to litter stoichiometry. These data suggest that in the studied Amazonian rainforest, tree canopy composition is an important driver of the microbial respiration process via leaf litter fall, resulting in potentially strong plant-soil feedbacks. (C) 2011 Elsevier Ltd. All rights reserved. |
| Address |
[Fanin, Nicolas; Haettenschwiler, Stephan; Barantal, Sandra; Fromin, Nathalie] CNRS, CEFE, UMR 5175, F-34293 Montpellier 5, France, Email: nicolas.fanin@cefe.cnrs.fr |
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| Publisher |
Pergamon-Elsevier Science Ltd |
Place of Publication |
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Editor |
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| Language |
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Summary Language |
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Original Title |
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| Series Editor |
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Series Title |
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Abbreviated Series Title |
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| Series Volume |
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Series Issue |
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Edition |
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| ISSN |
0038-0717 |
ISBN |
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Medium |
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| Area |
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Expedition |
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Conference |
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| Notes |
ISI:000289219500019 |
Approved |
no |
| Call Number |
EcoFoG @ webmaster @ |
Serial |
304 |
| Permanent link to this record |
