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Marcon, E.; Traissac, S.; Puech, F.; Lang, G. |
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Title  |
Tools to characterize point patterns: dbmss for R |
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Journal Article |
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2015 |
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Journal of Statistical Software |
Abbreviated Journal |
Journal of Statistical Software |
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67 |
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Codesnippet3 |
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1-15 |
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Point patterns; R; Spatial structure |
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The dbmss package for R provides an easy-to-use toolbox to characterize the spatial structure of point patterns. Our contribution presents the state of the art of distance-based methods employed in economic geography and which are also used in ecology. Topographic functions such as Ripley’s K, absolute functions such as Duranton and Overman’s Kd and relative functions such as Marcon and Puech’s M are implemented. Their confidence envelopes (including global ones) and tests against counterfactuals are included in the package. © 2015, American Statistical Association. All rights reserved. |
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AgroParisTech, INRA, UMR 518 Math. Info. Appli., 16 rue Claude Bernard, Paris, France |
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Export Date: 22 October 2015 |
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EcoFoG @ webmaster @ |
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635 |
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Jaouen, G.; Fournier, M.; Almeras, T. |
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Title |
Thigmomorphogenesis versus light in biomechanical growth strategies of saplings of two tropical rain forest tree species |
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Journal Article |
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2010 |
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Annals of Forest Science |
Abbreviated Journal |
Ann. For. Sci. |
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67 |
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2 |
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211 |
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biomechanics; thigmomorphogenesis; height growth strategies; tropical rain forest; French Guiana |
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In the dense tropical rainforest understorey, saplings exhibit different growth strategies aiming at reaching light levels better fitting their ecology. Investing mainly in height growth, at the expense of their width, a lot are close to mechanical instability. Tachigali melinonii, a long living heliophilic tree species, is frequently observed to be extremely slender and supported by neighbours. Such observations suggest an active growth control through the perception of mechanical environment. Mechanical environment or light availability, which one is the most influent on growth and slenderness (H/D)? To test this question, we recorded growth of control and staked saplings of two species with contrasting habits and ecology: T. melinonii, and Dicorynia guianensis, along a natural light gradient. Dicorynia, the more stable, responded more clearly to the staking treatment, showing slenderness increase when light is available, whereas for Tachigali, only light availability governed growth. For Tachigali, growth allocation is mainly governed by light availability and ontogeny, whereas Dicorynia is probably similar to the average tree strategy, using the thigmomorphogenetic physiological process to control its stability. |
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[Jaouen, Gaelle; Almeras, Tancrede] Univ Antilles Guyane, INRA, CNRS,Cirad, Unite Mixte Rech Ecol Forets Guyane,AgroParisTech, Kourou 97379, French Guiana, Email: gaelle.jaouen@ecofog.gf |
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EDP SCIENCES S A |
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1286-4560 |
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ISI:000276507100012 |
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EcoFoG @ eric.marcon @ |
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61 |
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Foucaud, J.; Rey, O.; Robert, S.; Crespin, L.; Orivel, J.; Facon, B.; Loiseau, A.; Jourdan, H.; Kenne, M.; Masse, P.S.M.; Tindo, M.; Vonshak, M.; Estoup, A. |
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Title |
Thermotolerance adaptation to human-modified habitats occurs in the native range of the invasive ant Wasmannia auropunctata before long-distance dispersal |
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Journal Article |
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2013 |
Publication |
Evolutionary Applications |
Abbreviated Journal |
Evol. Appl. |
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6 |
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4 |
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721-734 |
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Adaptation; Heat shock; Invasive species; Natural selection and contemporary evolution; Thermotolerance |
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Key evolutionary events associated with invasion success are traditionally thought to occur in the introduced, rather than the native range of species. In the invasive ant Wasmannia auropunctata, however, a shift in reproductive system has been demonstrated within the native range, from the sexual non-dominant populations of natural habitats to the clonal dominant populations of human-modified habitats. Because abiotic conditions of human- modified habitats are hotter and dryer, we performed lab experiments on workers from a set of native and introduced populations, to investigate whether these ecological and genetic transitions were accompanied by a change in thermotolerance and whether such changes occurred before establishment in the introduced range. Thermotolerance levels were higher in native populations from human-modified habitats than in native populations from natural habitats, but were similar in native and introduced populations from human-modified habitats. Differences in thermotolerance could not be accounted for by differences in body size. A scenario based on local adaptation in the native range before introduction in remote areas represents the most parsimonious hypothesis to account for the observed phenotypic pattern. These findings highlight the importance of human land use in explaining major contemporary evolutionary changes. © 2013 The Authors. |
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Department of Biology, Stanford University, Stanford, CA, United States |
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17524563 (Issn) |
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Export Date: 5 June 2013; Source: Scopus; :doi 10.1111/eva.12058; Language of Original Document: English; Correspondence Address: Foucaud, J.; INRA, UMR1062 CBGP, Montpellier, France; email: foucaud@supagro.inra.fr |
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EcoFoG @ webmaster @ |
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488 |
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Seymour, R.S.; Gibernau, M.; Pirintsos, S.A. |
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Title |
Thermogenesis of three species of Arum from Crete |
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Journal Article |
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2009 |
Publication |
Plant Cell and Environment |
Abbreviated Journal |
Plant Cell Environ. |
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32 |
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10 |
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1467-1476 |
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Araceae; arum lily; inflorescence; pollination; temperature regulation |
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Inflorescences of arum lilies have a three-part spadix with a scent-producing, sterile appendix above two bands of fertile male and female florets. The appendix and male florets are thermogenic, but with different temporal patterns. Heat-production was measured in Arum concinnatum, A. creticum and A. idaeum. The male florets of A. concinnatum showed a 3 d continuous episode of thermogenesis with three waves, and the appendix warmed in a single, 6 h episode. Maximum fresh-mass-specific CO2 production rate was 0.17 μmol s(-1) g(-1) to achieve a 10.9 degrees C temperature elevation by the appendix, and 0.92 μmol s(-1) g(-1) to achieve a 4.8 degrees C elevation by male florets. Reversible, physiological temperature regulation was not evident in either tissue. Respiration increased with tissue temperatures with Q(10) values of 1.8-3.9, rather than less than 1.0 as occurs in thermoregulatory flowers. Experimental step changes in temperature of appendix and male floret tissues also failed to show thermoregulatory responses. The patterns of thermogenesis therefore appear to be fixed by the temporal sequence of blooming. Thermogenesis in the alpine species, A. creticum and A. idaeum, was significantly lower than in the lowland A. concinnatum, possibly related to difficulty in raising floral temperature in their cold and windy habitat. |
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[Seymour, Roger S.] Univ Adelaide, Adelaide, SA 5005, Australia, Email: roger.seymour@adelaide.edu.au |
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WILEY-BLACKWELL PUBLISHING, INC |
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0140-7791 |
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ISI:000269592300016 |
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EcoFoG @ eric.marcon @ |
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195 |
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Le Lann, C.; Roux, O.; Serain, N.; Van Alphen, J.J.M.; Vernon, P.; Van Baaren, J. |
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Title |
Thermal tolerance of sympatric hymenopteran parasitoid species: does it match seasonal activity? |
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Journal Article |
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2011 |
Publication |
Physiological Entomology |
Abbreviated Journal |
Physiol. Entomol. |
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36 |
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1 |
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21-28 |
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Climate change; critical thermal limits; CTmax; CTmin; dry mass; guild; hind tibia length; seasonal activities; surface to volume ratio |
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Climatic changes result in an increased in mean temperature and in a higher incidence of extreme weather events such as heat and cold waves. For ectotherms, such as insect parasitoids, the ability to remain active under extreme climatic conditions is a significant key to fitness. The body size of individuals, and in particular their surface to volume ratio, may play a role in their resistance to thermal conditions. The thermal tolerances are investigated of two closely-related sympatric parasitoid species [Aphidius avenae Haliday and Aphidius rhopalosiphi De Stefani-Perez (Hymenoptera: Aphidiinae)] that have a similar ecology but differ in body size and phenologies. The critical thermal limits of individuals are assessed in both sexes of each parasitoid species and the influence of surface volume ratios on their thermal tolerances. Aphidius avenae is less resistant to low temperatures and more resistant to high temperatures than A. rhopalosiphi. The lower surface to volume ratio of A. avenae individuals may help them to remain active in summer when experiencing heat waves. However, body size is not the sole factor that plays a role in differences of thermal tolerance between species and body size may not be an adaptation to extreme temperatures but rather a by-product of developmental regulation. Closely-related sympatric species from the same ecological guild can have different thermal tolerances that may allow them to occur within the same habitat. The present study also highlights the importance of clearly defining how to measure critical thermal limits to determine the thermal tolerance of a species. |
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[Le Lann, Cecile; Serain, Nelly; Van Alphen, Jacques J. M.; Vernon, Philippe; Van Baaren, Joan] Univ Rennes 1, UMR CNRS ECOBIO 6553, F-35042 Rennes, France, Email: cecile.lelann@univ-rennes1.fr |
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Wiley-Blackwell |
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0307-6962 |
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ISI:000287790900004 |
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EcoFoG @ webmaster @ |
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294 |
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Fortunel, C.; Paine, C.E.T.; Fine, P.V.A.; Mesones, I.; Goret, J.; Burban, B.; Cazal, J.; Baraloto, C.; Comita, L. |
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There's no place like home: seedling mortality contributes to the habitat specialisation of tree species across Amazonia |
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Journal Article |
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2016 |
Publication |
Ecology Letters |
Abbreviated Journal |
Ecology Letters |
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19 |
Issue |
10 |
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1256-1266 |
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Amazon basin; forests habitats; habitat association; herbivory; light availability; plant lineages; rainfall temporal variation; seedling performance; soil fertility; tropical trees |
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Understanding the mechanisms generating species distributions remains a challenge, especially in hyperdiverse tropical forests. We evaluated the role of rainfall variation, soil gradients and herbivory on seedling mortality, and how variation in seedling performance along these gradients contributes to habitat specialisation. In a 4-year experiment, replicated at the two extremes of the Amazon basin, we reciprocally transplanted 4638 tree seedlings of 41 habitat-specialist species from seven phylogenetic lineages among the three most important forest habitats of lowland Amazonia. Rainfall variation, flooding and soil gradients strongly influenced seedling mortality, whereas herbivory had negligible impact. Seedling mortality varied strongly among habitats, consistent with predictions for habitat specialists in most lineages. This suggests that seedling performance is a primary determinant of the habitat associations of adult trees across Amazonia. It further suggests that tree diversity, currently mostly harboured in terra firme forests, may be strongly impacted by the predicted climate changes in Amazonia. © 2016 John Wiley & Sons Ltd/CNRS |
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Department of Ecology and Evolutionary Biology, University of California, Los Angeles, CA, United States |
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Export Date: 27 October 2016 |
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EcoFoG @ webmaster @ |
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698 |
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Houel, E.; Gonzalez, G.; Bessière, J.-M.; Odonne, G.; Eparvier, V.; Deharo, E.; Stien, D. |
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Therapeutic switching: From antidermatophytic essential oils to new leishmanicidal products |
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Journal Article |
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2015 |
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Memorias do Inst. Oswaldo Cruz |
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110 |
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1 |
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106-113 |
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Antifungal agents; Antiparasitic agents; Leishmania; Peritoneal macrophages – sesquiterpenes; Therapeutic switching |
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This study examined whether the antidermatophytic activity of essential oils (EOs) can be used as an indicator for the discovery of active natural products against Leishmania amazonensis. The aerial parts of seven plants were hydrodistilled. Using broth microdilution techniques, the obtained EOs were tested against three strains of dermatophytes (Trichophyton mentagrophytes, Microsporum gypseum and Microsporum canis). To compare the EOs antifungal and antiparasitic effects, the EOs activities against axenic amastigotes of L. amazonensis were concurrently evaluated. For the most promising EOs, their antileishmanial activities against parasites infecting peritoneal macrophages of BALB/c mice were measured. The most interesting antifungal candidates were the EOs from Cymbopogon citratus, Otacanthus azureus and Protium heptaphyllum, whereas O. azureus, Piper hispidum and P. heptaphyllum EOs exhibited the lowest 50% inhibitory concentration (IC50) values against axenic amastigotes, thus revealing a certain correspondence between both activities. The P. hispidum EO was identified as the most promising product in the results from the infected macrophages model (IC50: 4.7 μg/mL, safety index: 8). The most abundant compounds found in this EO were sesquiterpenes, notably curzerene and furanodiene. Eventually, the evaluation of the antidermatophytic activity of EOs appears to be an efficient method for identifying new potential drugs for the treatment of L. amazonensis. |
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Export Date: 17 March 2015 |
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EcoFoG @ webmaster @ |
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587 |
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Foucaud, J.; Estoup, A.; Loiseau, A.; Rey, O.; Orivel, J. |
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Thelytokous parthenogenesis, male clonality and genetic caste determination in the little fire ant: new evidence and insights from the lab |
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Journal Article |
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2010 |
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Heredity |
Abbreviated Journal |
Heredity |
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105 |
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2 |
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205-212 |
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reproduction system; thelytokous parthenogenesis; male clonality; genetic caste determination; Wasmannia auropunctata |
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Previous studies indicate that some populations of the little fire ant, Wasmannia auropunctata, display an unusual reproduction system polymorphism. Although some populations have a classical haplodiploid reproduction system, in other populations queens are produced by thelytokous parthenogenesis, males are produced by a male clonality system and workers are produced sexually. An atypical genetic caste determination system was also suggested. However, these conclusions were indirectly inferred from genetic studies on field population samples. Here we set up experimental laboratory nests that allow the control of the parental relationships between individuals. The queens heading those nests originated from either putatively clonal or sexual populations. We characterized the male, queen and worker offspring they produced at 12 microsatellite loci. Our results unambiguously confirm the unique reproduction system polymorphism mentioned above and that male clonality is strictly associated with thelytokous parthenogenesis. We also observed direct evidence of the rare production of sexual gynes and arrhenotokous males in clonal populations. Finally, we obtained evidence of a genetic basis for caste determination. The evolutionary significance of the reproduction system polymorphism and genetic caste determination as well as future research opportunities are discussed. Heredity (2010) 105, 205-212; doi: 10.1038/hdy.2009.169; published online 25 November 2009 |
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[Foucaud, J.; Estoup, A.; Loiseau, A.; Rey, O.] INRA, UMR CBGP, IRD, Cirad,Montpellier SupAgro, Montferrier Sur Lez, France, Email: julien.foucaud@legs.cnrs-gif.fr |
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NATURE PUBLISHING GROUP |
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0018-067X |
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ISI:000280111800007 |
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EcoFoG @ eric.marcon @ |
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78 |
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Rodrigues, A.M.S.; Stien, D.; Eparvier, V.; Espindola, L.S.; Beauchene, J.; Amusant, N.; Lemenager, N.; Baudasse, C.; Raguin, L. |
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The wood preservative potential of long-lasting Amazonian wood extracts |
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2012 |
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International Biodeterioration and Biodegradation |
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75 |
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146-149 |
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Durable wood extracts; Handroanthus serratifolius; Rotting fungi; Wood preservation |
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Investigations were carried out on the efficacy of extracts from seven Amazonian woods (Bagassa guianensis, Manilkara huberi, Sextonia rubra, Vouacapoua americana, Andira surinamensis, Handroanthus serratifolius, and Qualea rosea) with varying natural durability to reduce soft-rot degradation in a 6-wk soil-bed test. Six of the wood extracts had shown efficacy against soft-rot fungi. In particular, the preservation efficacies of B. guianensis, H. serratifolius, and S. rubra extracts were highly significant up to retention levels of 23, 25, and 12 kg m-3, respectively. Three extracts (A. surinamensis, H. serratifolius, and Q. rosea) were then tested against Gloeophyllum trabeum (brown rot) and Trametes versicolor (white rot), in an agar-block test. H. serratifolius wood extract was very efficient at protecting P. sylvestris samples at 5.1 kg m-3 against the brown rot. This extract could be used as a basis for new wood protectant formulations. © 2012 Elsevier Ltd. |
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Laboratoire de Préservation, CIRAD, 73 rue JF Breton, Montpellier 34398, TA B 40-16, cedex 5, France |
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Export Date: 15 January 2013; Source: Scopus |
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EcoFoG @ webmaster @ |
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457 |
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Ruiz-Gonzalez, M.X.; Corbara, B.; Leroy, C.; Dejean, A.; Orivel, J. |
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The Weaver Wasp: Spinning Fungus into a Nest |
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Journal Article |
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2010 |
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Biotropica |
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Biotropica |
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42 |
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4 |
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402-404 |
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Allomerus decemarticulatus; French Guiana; Hirtella physophora; nest architecture; Nitela constructor; wasp biology |
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Wasp nests range from simple to complex structures made of paper or mud. Here, we show that a Neotropical wasp of the genus Nitela builds its nest entirely by weaving endophytic fungal hyphae and spider silk harvested from the leaves growing in the understory of the rain forest in French Guiana. |
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[Ruiz-Gonzalez, Mario X.; Orivel, Jerome] Univ Toulouse, UPS, EDB, Lab Evolut & Divers Biol, F-31062 Toulouse, France, Email: orivel@cict.fr |
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WILEY-BLACKWELL PUBLISHING, INC |
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0006-3606 |
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ISI:000279438900002 |
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Call Number |
EcoFoG @ eric.marcon @ |
Serial |
54 |
|
| Permanent link to this record |
