| Records |
| Author |
Scotti, I.; Paglia, G.; Magni, F.; Morgante, M. |
| Title |
Population genetics of Norway spruce (Picea abies Karst.) at regional scale: sensitivity of different microsatellite motif classes in detecting differentiation |
Type |
Journal Article |
| Year |
2006 |
Publication |
Annals of Forest Science |
Abbreviated Journal |
Ann. For. Sci. |
| Volume |
63 |
Issue |
5 |
Pages |
485-491 |
| Keywords |
conifers; SSR; divergence; statistical testing; genetic distance |
| Abstract |
Four populations of Norway spruce (Picea abies Karst.) were screened using nine nuclear microsatellite markers (three trinucleotides and six dinucleotides) and four chloroplast markers (all mononucleotides). Marker classes were compared for their variability, mutation rate and ability to detect differentiation between stands. Dinucleotide markers proved to be the most variable group and chloroplast stretches the least variable, with differences in mutation rate between the former and the latter spanning over two orders of magnitude. Variability correlated to the number of repeats but not to the absolute length of the microsatellite region. The different marker classes were combined with two different measures of genetic distance in order to investigate the performance of markers and evolutionary models for the study of genetic variation in natural populations of Norway spruce. Weir and Cockeram's F-ST generally performed better in this clear-cut, four-population model study. Chloroplast haplotypes turned out to be the most sensitive marker system, being able to differentiate populations and to detect differences in genetic variability between sub-regions. |
| Address |
INRA, UMR ECOFOG, Kourou 97387, French Guiana, Email: ivan.scotti@kourou.cirad.fr |
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| Publisher |
EDP SCIENCES S A |
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Series Issue |
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Edition |
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| ISSN |
1286-4560 |
ISBN |
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Conference |
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| Notes |
ISI:000240514800005 |
Approved |
no |
| Call Number |
EcoFoG @ eric.marcon @ |
Serial |
177 |
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| Author |
Baraloto, C.; Bonal, D.; Goldberg, D.E. |
| Title |
Differential seedling growth response to soil resource availability among nine neotropical tree species |
Type |
Journal Article |
| Year |
2006 |
Publication |
Journal of Tropical Ecology |
Abbreviated Journal |
J. Trop. Ecol. |
| Volume |
22 |
Issue |
|
Pages |
487-497 |
| Keywords |
biomass allocation; Dicorynia; drought stress; Eperua; French Guiana; Goupia; Jacaranda; plasticity; Qualea; Recordorylon; relative growth rate; Sextonia; soil phosphorus; specific leaf area; Virola |
| Abstract |
Although the potential contribution to tropical tree species coexistence of niche differentiation along light gradients has received much attention, the degree to which species perform differentially along soil resource gradients remains unclear. To examine differential growth response to soil resources, we grew seedlings of nine tropical tree species at 6.0% of full sun for 12 mo in a factorial design of two soil types (clay and white sand), two phosphate fertilization treatments (control and addition of 100 mg P kg(-1)) and two watering treatments (field capacity and water limitation to one-third field capacity). Species differed markedly in biomass growth rate, but this hierarchy was almost completely conserved across all eight treatments. All species grew more slowly in sand than clay soils. and no species grew faster with phosphate additions. Only Eperua grandiflora and E. falcata showed significant growth increases in the absence of water limitation. Faster-growing species were characterized by high specific leaf area, high leaf allocation and high net assimilation rate but not lower root allocation. Slower-growing species exhibited greater plasticity in net assimilation rate. suggesting that tolerance of edaphic stress in these species is related more to stomatal control than to whole-plant carbon allocation. Although relative growth rate for biomass was correlated with both its physiological and morphological components. interspecific differences were best explained by differences in net assimilation rate across six of the eight treatments. A suite of traits including high assimilation and high specific leaf area maintains rapid growth rate of faster-growing species across a wide gradient of soil resources, but the lack of plasticity they exhibit may compromise their survival in the poorest soil environments. |
| Address |
Univ Michigan, Dept Ecol & Evolutionary Biol, Ann Arbor, MI 48109 USA, Email: baraloto.c@kourou.cirad.fr |
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Thesis |
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| Publisher |
CAMBRIDGE UNIV PRESS |
Place of Publication |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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| ISSN |
0266-4674 |
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| Notes |
ISI:000239975200001 |
Approved |
no |
| Call Number |
EcoFoG @ eric.marcon @ |
Serial |
178 |
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| Author |
Epron, D.; Bosc, A.; Bonal, D.; Freycon, V. |
| Title |
Spatial variation of soil respiration across a topographic gradient in a tropical rain forest in French Guiana |
Type |
Journal Article |
| Year |
2006 |
Publication |
Journal of Tropical Ecology |
Abbreviated Journal |
J. Trop. Ecol. |
| Volume |
22 |
Issue |
|
Pages |
565-574 |
| Keywords |
acrisol; carbon balance; carbon flux; gleysol; root biomass |
| Abstract |
The objective of this study was to analyse the factors explaining spatial variation in soil respiration over topographic transects in a tropical rain forest of French Guiana. The soil of 30 plots along six transects was characterized. The appearance of the 'dry to the touch' character at a depth of less than 1.2 m was used to discriminate soils exhibiting vertical drainage from soils exhibiting superficial lateral drainage and along with colour and texture, to define five classes from well-drained to strongly hydromorphic soils. Spatial variation in soil respiration was closely related to topographic position and soil type. Increasing soil water content and bulk density and decreasing root biomass and soil carbon content explained most of the decrease in soil respiration from the plateaux (vertically drained hypoferralic acrisol) to the bottomlands (haplic gleysol). These results will help to stratify further field experiments and to identify the underlying determinants of spatial variation in soil respiration to develop mechanistic models of soil respiration. |
| Address |
Univ Nancy 1, UMR 1137, INRA, UHP Ecol & Ecophysiol Forestieres,Fac Sci, F-54506 Vandoeuvre Les Nancy, France, Email: Daniel.Epron@scbiol.uhp-nancy.fr |
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| Publisher |
CAMBRIDGE UNIV PRESS |
Place of Publication |
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Original Title |
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| Series Editor |
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Series Title |
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Abbreviated Series Title |
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| Series Volume |
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Series Issue |
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Edition |
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| ISSN |
0266-4674 |
ISBN |
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Medium |
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| Area |
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Expedition |
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Conference |
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| Notes |
ISI:000239975200008 |
Approved |
no |
| Call Number |
EcoFoG @ eric.marcon @ |
Serial |
179 |
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| Author |
Degen, B.; Blanc, L.; Caron, H.; Maggia, L.; Kremer, A.; Gourlet-Fleury, S. |
| Title |
Impact of selective logging on genetic composition and demographic structure of four tropical tree species |
Type |
Journal Article |
| Year |
2006 |
Publication |
Biological Conservation |
Abbreviated Journal |
Biol. Conserv. |
| Volume |
131 |
Issue |
3 |
Pages |
386-401 |
| Keywords |
demography; genetic diversity; logging; phenology; pollen and seed dispersal; simulation; trees; tropics |
| Abstract |
Over-exploitation and fragmentation are serious problems for tropical forests. Most sustainable forest management practices avoid clear-cuts and apply selective logging systems focused on a few commercial species. We applied a simulation model to estimate the impact of such selective logging scenarios on the genetic diversity and demography of four tropical tree species from French Guiana. The simulations used data on genetic and demographic composition, growth, phenology and pollen and seed dispersal obtained for Dicorynia guianensis, Sextonia rubra, Symphonia globulifera and Vouacapoua americana at the experimental site in Paracou. Whereas Symphonia globulifera serves as a model for a species with low logging pressure, the other three species represent the most exploited tree species in French Guiana. In simulations with moderate logging, typical for French Guiana, with large cutting diameter (> 60 cm diameter) and long cutting cycles (65 years), the two species V. americana and Sextonia rubra were not able to recover their initial stock at the end of the rotation period, with a large decrease in the number of individuals and in basal area. Under a more intensive logging system (cutting diameter > 45 cm diameter, cutting cycles of 30 years) that is common practice in the Brazilian Amazon, only Symphonia globulifera showed no negative impact. Generally, the differences between the genetic parameters in the control scenarios without logging and the logging scenarios were surprisingly small. The main reasons for this were the overlapping of generations and the effective dispersal ability of gene vectors in all species, which guarantee relative homogeneity of the genetic structure in different age classes. Nevertheless, decreasing the population size by logging reduced the number of genotypes and caused higher genetic distances between the original population and the population at the end of the logging cycles. Sensitivity analysis showed that genetic changes in the logging scenarios were principally determined by the growth, densities and cutting diameter of each species, and only to a very small extent by the reproductive system including factors such as pollen and seed dispersal and flowering phenology. (c) 2006 Elsevier Ltd. All rights reserved. |
| Address |
BFH, Inst Forstgenet & Forstpflanzenzuchtung, D-22927 Grosshansdorf, Germany, Email: b.degen@holz.uni-hamburg.de |
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Thesis |
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| Publisher |
ELSEVIER SCI LTD |
Place of Publication |
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Editor |
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Summary Language |
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Original Title |
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| Series Editor |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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| ISSN |
0006-3207 |
ISBN |
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| Notes |
ISI:000239139400004 |
Approved |
no |
| Call Number |
EcoFoG @ eric.marcon @ |
Serial |
180 |
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| Author |
Maron, P.A.; Schimann, H.; Ranjard, L.; Brothier, E.; Domenach, A.M.; Lensi, R.; Nazaret, S. |
| Title |
Evaluation of quantitative and qualitative recovery of bacterial communities from different soil types by density gradient centrifugation |
Type |
Journal Article |
| Year |
2006 |
Publication |
European Journal of Soil Biology |
Abbreviated Journal |
Eur. J. Soil Biol. |
| Volume |
42 |
Issue |
2 |
Pages |
65-73 |
| Keywords |
bacterial community; soil; density gradient; DNA fingerprint |
| Abstract |
Extracting and purifying a representative fraction of bacteria from soil is necessary for the application of many techniques of microbial ecology. Here the influence of different soil types on the quantitative and qualitative recovery of bacteria by soil grinding and Nycodenz density gradient centrifugation was investigated. Three soils presenting contrasted physicochemical characteristics were used for this study. For each soil, the total (AODC: acridine orange direct count) and culturable (cfa: colony-forming units) bacterial densities were measured in three distinct fractions: (i) the primary soil, (ii) the soil pellet (soil remaining after centrifugation), and (iii) the extracted cells. The automated-ribosomal intergenic spacer analysis (A-RISA) was used to characterize the community structure directly from the DNA extracted from each fraction. The physicochemical characteristics of soils were found to influence both the efficiency of bacterial cell recovery and the representativeness of the extracted cells in term of community structures between the different fractions. Surprisingly, the most representative extracted cells were obtained from the soil exhibiting the lowest efficiency of cell recovery. Our results demonstrated that quantitative and qualitative cell recovery using Nycodenz density gradient centrifugation are not necessarily related and could be differentially biased according to soil type. (c) 2006 Elsevier SAS. All rights reserved. |
| Address |
Univ Lyon 1, CNRS, UMR 5557, Ctr Microbial Ecol, F-69622 Villeurbanne, France, Email: nazaret@biomserv.univ-lyon1.fr |
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Thesis |
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| Publisher |
ELSEVIER FRANCE-EDITIONS SCIENTIFIQUES MEDICALES ELSEVIER |
Place of Publication |
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Editor |
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Summary Language |
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Original Title |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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| ISSN |
1164-5563 |
ISBN |
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Medium |
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Expedition |
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Conference |
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| Notes |
ISI:000238534500001 |
Approved |
no |
| Call Number |
EcoFoG @ eric.marcon @ |
Serial |
181 |
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| Author |
Veron, V.; Caron, H.; Degen, B. |
| Title |
Gene flow and mating system of the tropical tree Sextonia rubra |
Type |
Journal Article |
| Year |
2005 |
Publication |
Silvae Genetica |
Abbreviated Journal |
Silvae Genet. |
| Volume |
54 |
Issue |
6 |
Pages |
275-280 |
| Keywords |
genetic diversity; gene flow; heterozygosity; microsatellites; mixed mating; tropical tree; twogener |
| Abstract |
In this paper we report a study of the mating system and gene flow of Sextonia rubra, a hermaphroditic, insect pollinated tropical tree species with a geographic distribution in the Guyana Plateau and the Amazon. Using five microsatellites we analysed 428 seeds of 27 open pollinated families at the experimental site “Paracou” in French Guiana. We observed, compared to other tropical tree species, a high level of genetic diversity. We estimated parameters of the mating system and gene flow by using the mixed mating model and the TwoGener approach. The estimated multilocus outcrossing rate, t(m), was 0.992 indicating nearly complete outcrossing. A significant level of biparental inbreeding and a:small proportion. of full-sibs were estimated for the 27 seed arrays. The differentiation of allelic frequencies among the pollen pools was (Phi(FT) = 0.061. We estimated mean pollen dispersal distances between 65 m and 89 m according to the dispersal models used. The joint estimation of pollen dispersal and density of reproductive trees gave an effective density estimate of 2.1-2.2 trees/ha. |
| Address |
INRA, UMR, ECOFOG, Kourou 9738, French Guiana, Email: b.degen@holz.uni-hamburg.de |
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Thesis |
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| Publisher |
J D SAUERLANDERS VERLAG |
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Summary Language |
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Abbreviated Series Title |
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Series Issue |
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Edition |
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| ISSN |
0037-5349 |
ISBN |
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Conference |
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| Notes |
ISI:000235239400005 |
Approved |
no |
| Call Number |
EcoFoG @ eric.marcon @ |
Serial |
182 |
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| Author |
Hardy, O.J.; Maggia, L.; Bandou, E.; Breyne, P.; Caron, H.; Chevallier, M.H.; Doligez, A.; Dutech, C.; Kremer, A.; Latouche-Halle, C.; Troispoux, V.; Veron, V.; Degen, B. |
| Title |
Fine-scale genetic structure and gene dispersal inferences in 10 Neotropical tree species |
Type |
Journal Article |
| Year |
2006 |
Publication |
Molecular Ecology |
Abbreviated Journal |
Mol. Ecol. |
| Volume |
15 |
Issue |
2 |
Pages |
559-571 |
| Keywords |
French Guiana; gene dispersal; seed dispersal; spatial genetic structure; tropical trees |
| Abstract |
The extent of gene dispersal is a fundamental factor of the population and evolutionary dynamics of tropical tree species, but directly monitoring seed and pollen movement is a difficult task. However, indirect estimates of historical gene dispersal can be obtained from the fine-scale spatial genetic structure of populations at drift-dispersal equilibrium. Using an approach that is based on the slope of the regression of pairwise kinship coefficients on spatial distance and estimates of the effective population density, we compare indirect gene dispersal estimates of sympatric populations of 10 tropical tree species. We re-analysed 26 data sets consisting of mapped allozyme, SSR (simple sequence repeat), RAPD (random amplified polymorphic DNA) or AFLP (amplified fragment length polymorphism) genotypes from two rainforest sites in French Guiana. Gene dispersal estimates were obtained for at least one marker in each species, although the estimation procedure failed under insufficient marker polymorphism, limited sample size, or inappropriate sampling area. Estimates generally suffered low precision and were affected by assumptions regarding the effective population density. Averaging estimates over data sets, the extent of gene dispersal ranged from 150 m to 1200 m according to species. Smaller gene dispersal estimates were obtained in species with heavy diaspores, which are presumably not well dispersed, and in populations with high local adult density. We suggest that limited seed dispersal could indirectly limit effective pollen dispersal by creating higher local tree densities, thereby increasing the positive correlation between pollen and seed dispersal distances. We discuss the potential and limitations of our indirect estimation procedure and suggest guidelines for future studies. |
| Address |
Univ Libre Bruxelles, Serv Ecoethol Evolut, B-1050 Brussels, Belgium, Email: ohardy@ulb.ac.be |
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| Publisher |
BLACKWELL PUBLISHING |
Place of Publication |
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Series Issue |
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Edition |
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| ISSN |
0962-1083 |
ISBN |
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| Notes |
ISI:000235045500021 |
Approved |
no |
| Call Number |
EcoFoG @ eric.marcon @ |
Serial |
183 |
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| Author |
Picard, N.; Gourlet-Fleury, S.; Sist, P. |
| Title |
Using process-dependent groups of species to model the dynamics of a tropical rainforest |
Type |
Journal Article |
| Year |
2003 |
Publication |
Modelling Forest Systems |
Abbreviated Journal |
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| Volume |
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Issue |
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Pages |
237-248 |
| Keywords |
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| Abstract |
The high tree species diversity in tropical forests is difficult to take into account in models. The usual solution consists of defining groups of species and then adjusting a set of parameters for each group. In this study, we address this issue by allowing a species to move from one species group to another, depending on the biological process that is concerned. We developed this approach with a matrix model of forest dynamics, for a tropical rainforest in French Guiana, at Paracou, focusing on the methodological aspects. The forest dynamics is split into three components: recruitment, growth and mortality. We then built five recruitment groups, five growth groups and five mortality groups. One species is characterized by a combination of the three groups, thus yielding in total 5 X 5 X 5 = 125 possibilities, out of which 43 are actually observed. The resulting matrix model provides a better view of the floristic composition of the forest, and does not have more parameters than it would have with five global species groups. However, its predictions are no more precise than those of the matrix model based on five global groups. |
| Address |
Cirad Foret, Montpellier, France |
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| Publisher |
CABI PUBLISHING |
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Edition |
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| Notes |
ISI:000231866400021 |
Approved |
no |
| Call Number |
EcoFoG @ eric.marcon @ |
Serial |
249 |
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| Author |
Baraloto, C.; Forget, P.M.; Goldberg, D.E. |
| Title |
Seed mass, seedling size and neotropical tree seedling establishment |
Type |
Journal Article |
| Year |
2005 |
Publication |
Journal of Ecology |
Abbreviated Journal |
J. Ecol. |
| Volume |
93 |
Issue |
6 |
Pages |
1156-1166 |
| Keywords |
French Guiana; life-history trade-offs; microhabitat; path analysis; regeneration strategy; relative growth rate; seedling survival; shade tolerance |
| Abstract |
1 We examined among- and within-species effects of seed mass for seedling establishment from seed to 5 years of age in a field experiment at Paracou, French Guiana. 2 Six seeds of each of eight species were weighed and planted into each of 120 plots (1 m(2)) throughout closed-canopy forest along 12 100-m transects in 1998. 3 We described the microhabitat of each planting site using principal components derived from measurements of light availability, soil moisture, carbon and nitrogen content, and soil phosphorus availability. Although both survival and relative growth rate (RGR) increased with increasing light availability, no other microhabitat variable significantly affected seedling performance. Nor did the magnitude of microhabitat effects on survival or RGR differ among species. 4 Larger-seeded species were more likely to survive from germination to 1 year as well as from 1 to 5 years of age. RGR for seedling height during the first year post-germination was not related to seed mass, but smaller-seeded species did grow slightly faster thereafter. Path analyses revealed that correlations between seed mass and performance were explained in part because larger seeds produced larger initial seedlings, which tended to survive better but grow more slowly. 5 We also analysed within-species effects of seed mass for the larger-seeded Eperua grandiflora and Vouacapoua americana (both Caesalpiniaceae). Larger seeds produced larger seedlings in both species, but larger seeds survived better only for Eperua. Larger seedlings grew more slowly in both species, but did not offset the early (Eperua) and later (Vouacapoua) positive direct effects of seed mass on RGR that may represent contrasting strategies for reserve deployment. 6 Our results demonstrate that seed size influences performance within and among species in part because of indirect effects of initial seedling size. However, we suggest that traits tightly correlated with seed mass at the species level, such as specific leaf area, leaf longevity and photosynthetic capacity, may also contribute to interspecific performance differences. |
| Address |
Museum Natl Hist Nat, Dept Ecol & Gest Biodivers, UMR 5176, CNRS, Brunoy, France, Email: baraloto.c@kourou.cirad.fr |
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| Publisher |
BLACKWELL PUBLISHING |
Place of Publication |
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Series Issue |
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Edition |
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| ISSN |
0022-0477 |
ISBN |
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| Notes |
ISI:000233287500012 |
Approved |
no |
| Call Number |
EcoFoG @ eric.marcon @ |
Serial |
250 |
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| Author |
Fouquet, A.; Dubut, V.; Hataway, R.; Scotti-Saintagne, C.; Scotti, I.; Noonan, B. |
| Title |
Isolation and characterisation of 19 microsatellite loci from the Amazonian frog Adenomera andreae (Amphibia: Anura: Leptodactylidae) |
Type |
Journal Article |
| Year |
2009 |
Publication |
Conservation Genetics Resources |
Abbreviated Journal |
Conserv. Genet. Res. |
| Volume |
1 |
Issue |
1 |
Pages |
217-220 |
| Keywords |
Biomedicine |
| Abstract |
Nineteen novel microsatellite loci were isolated from Adenomera andreae, a widespread Amazonian frog considered to be a species complex. Three multiplex kits were optimized. Genetic diversity was assessed in 66 individuals sampled in three populations along the West of the Approuague River catchment (French Guiana). We also tested the multiplex kits in four other Adenomera and nine Leptodactylus species with 43.4 and 17.5% success respectively. |
| Address |
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| Publisher |
Springer Netherlands |
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Summary Language |
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Series Issue |
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Edition |
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| ISSN |
1877-7252 |
ISBN |
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| Notes |
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Approved |
no |
| Call Number |
EcoFoG @ eric.marcon @ |
Serial |
185 |
| Permanent link to this record |
