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Author Fortunel, C.; Paine, C.E.T.; Fine, P.V.A.; Kraft, N.J.B.; Baraloto, C.
Title Environmental factors predict community functional composition in Amazonian forests Type Journal Article
Year 2014 Publication Journal of Ecology Abbreviated Journal J. Ecol.
Volume 102 Issue 1 Pages 145-155
Keywords Amazonian landscape; Climatic and soil gradients; Determinants of plant community diversity and structure; Environmental filtering; Functional traits; Tree communities; Tropical forests
Abstract The consequences of biodiversity loss for ecosystem services largely depend on the functional identities of extirpated species. However, poor descriptions of spatial patterns of community functional composition across landscapes hamper accurate predictions, particularly in highly diverse tropical regions. Therefore, understanding how community functional composition varies across environmental gradients remains an important challenge. We sampled 15 functional traits in 800 Neotropical tree species across 13 forest plots representative of the broad climatic and soil gradients encompassed by three widespread lowland forest habitats (terra firme forests on clay-rich soils, seasonally flooded forests and white-sand forests) at opposite ends of Amazonia (Peru and French Guiana). We combined univariate and multivariate approaches to test the magnitude and predictability of environmental filtering on community leaf and wood functional composition. Directional shifts in community functional composition correlated with environmental changes across the 13 plots, with denser leaves, stems and roots in forests occurring in environments with limited water and soil-nutrient availability. Critically, these relationships allowed us to accurately predict the functional composition of 61 additional forest plots from environmental data alone. Synthesis. Environmental filtering consistently shapes the functional composition of highly diverse tropical forests at large scales across the terra firme, seasonally flooded and white-sand forests of lowland Amazonia. Environmental factors drive and allow the prediction of variation in community functional composition among habitat types in Amazonian forests. © 2013 British Ecological Society.
Address Department of Biology, University of Florida, Gainesville, FL, 32611, United States
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Notes Export Date: 31 December 2013; Source: Scopus; Coden: Jecoa; doi: 10.1111/1365-2745.12160; Language of Original Document: English; Correspondence Address: Fortunel, C.; INRA, UMR Ecologie des Forêts de Guyane, BP 709, Kourou Cedex, 97387, France; email: claire.fortunel@ecofog.gf; Funding Details: DEB-0743103/0743800, NSF, National Science Foundation; References: Agrawal, A.A., Fishbein, M., Plant defense syndromes (2006) Ecology, 87, pp. S132-S149; Anderson, L.O., Malhi, Y., Ladle, R.J., Aragao, L., Shimabukuro, Y., Phillips, O.L., Influence of landscape heterogeneity on spatial patterns of wood productivity, wood specific density and above ground biomass in Amazonia (2009) Biogeosciences, 6, pp. 1883-1902; Asner, G.P., Alencar, A., Drought impacts on the Amazon forest: the remote sensing perspective (2010) New Phytologist, 187, pp. 569-578; Asner, G.P., Loarie, S.R., Heyder, U., Combined effects of climate and land-use change on the future of humid tropical forests (2010) Conservation Letters, 3, pp. 395-403; Baraloto, C., Paine, C.E.T., Patiño, S., Bonal, D., Herault, B., Chave, J., Functional trait variation and sampling strategies in species-rich plant communities (2010) Functional Ecology, 24, pp. 208-216; Baraloto, C., Paine, C.E.T., Poorter, L., Beauchene, J., Bonal, D., Domenach, A.M., Hérault, B., Chave, J., Decoupled leaf and stem economics in rain forest trees (2010) Ecology Letters, 13, pp. 1338-1347; Baraloto, C., Rabaud, S., Molto, Q., Blanc, L., Fortunel, C., Hérault, B., Davila, N., Fine, P.V.A., Disentangling stand and environmental correlates of aboveground biomass in Amazonian forests (2011) Global Change Biology, 17, pp. 2677-2688; Baraloto, C., Molto, Q., Rabaud, S., Hérault, B., Valencia, R., Blanc, L., Fine, P.V.A., Thompson, J., Rapid simultaneous estimation of aboveground biomass and tree diversity across Neotropical forests: a comparison of field inventory methods (2013) Biotropica, 45, pp. 288-298; Belyea, L.R., Lancaster, J., Assembly rules within a contingent ecology (1999) Oikos, 86, pp. 402-416; Berry, S.L., Roderick, M.L., Estimating mixtures of leaf functional types using continental-scale satellite and climatic data (2002) Global Ecology and Biogeography, 11, pp. 23-39; Brando, P.M., Nepstad, D.C., Balch, J.K., Bolker, B., Christman, M.C., Coe, M., Putz, F.E., Fire-induced tree mortality in a neotropical forest: the roles of bark traits, tree size, wood density and fire behavior (2012) Global Change Biology, 18, pp. 630-641; Burnham, K.P., Anderson, D.R., Multimodel inference – understanding AIC and BIC in model selection (2004) Sociological Methods & Research, 33, pp. 261-304; Calcagno, V., de Mazancourt, C., glmulti: an R package for easy automated model selection with (generalized) linear models (2010) Journal of Statistical Software, 34, pp. 1-29; Chapin, F.S., BretHarte, M.S., Hobbie, S.E., Zhong, H.L., Plant functional types as predictors of transient responses of arctic vegetation to global change (1996) Journal of Vegetation Science, 7, pp. 347-358; Chaturvedi, R.K., Raghubanshi, A.S., Singh, J.S., Leaf attributes and tree growth in a tropical dry forest (2011) Journal of Vegetation Science, 22, pp. 917-931; Chave, J., Coomes, D., Jansen, S., Lewis, S.L., Swenson, N.G., Zanne, A.E., Towards a worldwide wood economics spectrum (2009) Ecology Letters, 12, pp. 351-366; Cingolani, A.M., Cabido, M., Gurvich, D.E., Renison, D., Diaz, S., Filtering processes in the assembly of plant communities: are species presence and abundance driven by the same traits? 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Author Perrin, A.-S.; Fujisaki, K.; Petitjean, C.; Sarrazin, M.; Godet, M.; Garric, B.; Horth, J.-C.; Balbino, L.C.; Filho, A.S.; de Almeida Machado, P.L.O.; Brossard, M.
Title Conversion of forest to agriculture in Amazonia with the chop-and-mulch method: Does it improve the soil carbon stock? Type Journal Article
Year 2014 Publication Agriculture, Ecosystems and Environment Abbreviated Journal Agric. Ecosyst. Environ.
Volume 184 Issue Pages 101-114
Keywords Annual crops; Brachiaria; Deforestation; Fire-free; French Guiana; No-tillage
Abstract Fire-free forest conversion with organic inputs as an alternative to slash-and-burn could improve agro-ecosystem sustainability. We assessed soil carbon mass changes in a sandy-clayey and well-drained soil in French Guiana after forest clearing by the chop-and-mulch method and crop establishment. At the experimental site of Combi, native forest was cut down in October 2008; woody biomass was chopped and incorporated into the top 20cm of soil. After about one year of legume and grass cover, three forms of land management were compared: grassland (Urochloa ruziziensis), maize/soybean crop rotation with disk tillage and in direct seeding without tillage. There were four replicates. We measured 14.16kgm-2 of carbon in 2mm-sieved soil down to 2m depth for the initial forest. Forest clearing did not induce significant soil compaction; neither did any specific agricultural practice. In converted soils, C stocks were measured in the 0-30cm layer after each crop for three years. Carbon mass changes for soil fractions <2mm (soil C stock) and >2mm (soil C pool) in the 0-5, 5-10, 10-20 and 20-30cm soil layers were assessed on an equivalent soil mass basis. One year and 1.5 years after deforestation, higher C stocks (+0.64 to 1.16kgCm-2yr-1) and C pools (+0.52 to 0.90kgCm-2yr-1) were measured in converted soils, compared to those of the forest into the top 30cm of soil. However, the masses of carbon in these converted soils declined later. The highest rates of carbon decrease were measured between 1.5 and 2 years after forest conversion in the <2mm soil fraction, from 0.46kgCm-2yr-1 (in grassland soils) to 0.71kgCm-2yr-1 (in cropland under no tillage). The carbon pool declined during the third year at rates of 0.41kgCm-2yr-1 (cropland under disk tillage) to 0.76kgCm-2yr-1 (grassland soils). Three years after forest conversion, C masses in the top 30cm of soils for grassland showed similar values than for forest. In comparison, the carbon stock in cropped soils managed under no tillage in direct seeding (without mulch) was significantly 17% and 16% lower than in forest and grassland soils, respectively. None of the studied agricultural practices succeeded in accumulating carbon from the chopped forest biomass. © 2013 Elsevier B.V.
Address EMBRAPA Arroz e Feijao, Cx Postal 179, CEP 75375-000 Santo Antonio de Goias, GO, Brazil
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Notes Export Date: 2 January 2014; Source: Scopus; Coden: Aeend; doi: 10.1016/j.agee.2013.11.009 Approved no
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Author Groc, S.; Delabie, J.H.C.; Fernández, F.; Leponce, M.; Orivel, J.; Silvestre, R.; Vasconcelos, H.L.; Dejean, A.
Title Leaf-litter ant communities in a pristine Guianese rainforest: stable functional structure versus high species turnover Type Journal Article
Year 2013 Publication Myrmecological News Abbreviated Journal Myrmecol. News
Volume 19 Issue Pages 43-51
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Call Number EcoFoG @ webmaster @ Serial 523
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Author Salhi, L.; Nait-Rabah, O.; Deyrat, C.; Roos, C.
Title Numerical Modeling of Single Helical Pile Behavior under Compressive Loading in Sand Type Journal Article
Year 2013 Publication Electronic Journal of Geotechnical Engineering Abbreviated Journal Electron. J. Geotech. Eng.
Volume 18 Issue Bundle T Pages 4119-4338
Keywords helical pile; finite element method; failure mechanisms; sand
Abstract The present research deals with helical piles behavior in cohesionless soil through finite element modeling. An approach of modeling of the screw-pile geometry has been proposed through the Finite Element Analysis (FEA) computer program Plaxis. The numerical results are compared with measurements from large scale test and the bearing capacity has been estimated using both cylindrical and individual bearing model. Moreover, different failure criterions have been applied to estimate the ultimate capacity. The effect of spacing ratio (S/Dh) on the screw-pile behavior has been further studied. It has found that results from the model fit the field results. Through the study of the load transfer mechanism, the transition from cylindrical shear to individual plate behavior occurs at a value of spacing ratio (1.5 to 2).
Address Laboratoire des matériaux et molécules en milieu amazonien, EcoFoG-Université des Antilles-Guyane, 97351 Cayenne, French Guiana
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Author Houel, E.; Rodrigues, A.M.S.; Jahn-Oyac, A.; Bessière, J.-M.; Eparvier, V.; Deharo, E.; Stien, D.
Title In vitro antidermatophytic activity of Otacanthus azureus (Linden) Ronse essential oil alone and in combination with azoles Type Journal Article
Year 2014 Publication Journal of Applied Microbiology Abbreviated Journal J. Appl. Microbiol.
Volume 116 Issue 2 Pages 288-294
Keywords Antifungal activity; Azoles; Dermatophytes; Essential oil; Otacanthus azureus; Synergy
Abstract Aims: We determined the chemical composition and investigated the antifungal activity of Otacanthus azureus (Linden) Ronse essential oil (EO) against a range of dermatophytes alone or in combination with azole antifungals. Methods and Results: Aerial parts of the plant were steam-distilled and the obtained oil was analysed by gas chromatography/mass spectrometry and 1H-NMR. It was shown to be largely composed of sesquiterpenes, with the main component being β-copaen-4-α-ol. Using broth microdilution techniques, this oil was found to have remarkable in vitro antifungal activities. Minimum inhibitory concentrations as low as 4 μg ml-1 were recorded. The analysis of the combined effect of the O. azureus EO with azoles using chequerboard assays revealed a synergism between the EO and ketoconazole, fluconazole or itraconazole against Trichophyton mentagrophytes. Notably, the O. azureus essential oil showed low cytotoxicity to VERO cells. Conclusions: The O. azureus essential oil alone or in combination with azoles is a promising antifungal agent in the treatment for human dermatomycoses caused by filamentous fungi. Significance and Impact of the Study: There is much interest in the study of essential oils for the discovery of new antimicrobial drugs. This study has highlighted the antidermatophytic activity of the O. azureus EO. © 2013 The Society for Applied Microbiology.
Address Institut de Recherche pour le Développement (IRD), UMR 152 Pharma-DEV, Toulouse, France
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Notes Export Date: 9 February 2014; Source: Scopus; Coden: Jamif; Language of Original Document: English; Correspondence Address: Houël, E.; CNRS – UMR Ecologie des Forêts de Guyane (EcoFoG), Institut Pasteur de la Guyane, 23 Avenue Pasteur, BP6010, 97306 Cayenne Cedex, French Guiana; email: emeline.houel@ecofog.gf Approved no
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Author Woolfit, M.; Iturbe-Ormaetxe, I.; Brownlie, J.C.; Walker, T.; Riegler, M.; Seleznev, A.; Popovici, J.; Rancès, E.; Wee, B.A.; Pavlides, J.; Sullivan, M.J.; Beatson, S.A.; Lane, A.; Sidhu, M.; McMeniman, C.J.; McGraw, E.A.; O'Neill, S.L.
Title Genomic evolution of the pathogenic Wolbachia strain, wMelPop Type Journal Article
Year 2013 Publication Genome Biology and Evolution Abbreviated Journal Genome Biolog. Evol.
Volume 5 Issue 11 Pages 2189-2204
Keywords Endosymbiont; Evolution; Genomics; Wolbachia
Abstract Most strains of the widespread endosymbiotic bacterium Wolbachia pipientis are benign or behave as reproductive parasites. The pathogenic strain wMelPop is a striking exception, however: it overreplicates in its insect hosts and causes severe life shortening. The mechanism of this pathogenesis is currently unknown. We have sequenced the genomes of three variants of wMelPop and of the closely related nonpathogenic strain wMelCS. We show that the genomes of wMelCS and wMelPop appear to be identical in the nonrepeat regions of the genome and differ detectably only by the triplication of a 19-kb region that is unlikely to be associated with life shortening, demonstrating that dramatic differences in the host phenotype caused by this endosymbiont may be the result of only minor genetic changes. We also compare the genomes of the original wMelPop strain from Drosophila melanogaster and two sequentialderivatives, wMelPop-CLA and wMelPop-PGYP. To develop wMelPop as a novel biocontrol agent, it was first transinfected into and passaged in mosquito cell lines for approximately 3.5 years, generating wMelPop-CLA. This cell line-passaged strain was then transinfected into Aedesaegypti mosquitoes, creating wMelPop-PGYP,which wassequenced after 4yearsin the insecthost. We observe a rapid burst of genomic changes during cell line passaging, but no further mutations were detected after transinfection into mosquitoes, indicating either that host preadaptation had occurred in cell lines, that cell lines are a more selectively permissive environment than animal hosts, or both. Our results provide valuable data on the rates of genomic and phenotypic change in Wolbachia associated with host shifts over short time scales. © The Author(s) 2013. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.
Address Institute for Molecular Bioscience, University of Queensland, Brisbane, Australia
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Notes Export Date: 9 February 2014; Source: Scopus; Language of Original Document: English; Correspondence Address: O'Neill, S.L.; School of Biological Sciences, Monash University, Clayton, VIC, Australia; email: scott.oneill@monash.edu; Funding Details: NIH, National Institutes of Health Approved no
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Author Rockwell, C.A.; Kainer, K.A.; d'Oliveira, M.V.N.; Staudhammer, C.L.; Baraloto, C.
Title Logging in bamboo-dominated forests in southwestern Amazonia: Caveats and opportunities for smallholder forest management Type Journal Article
Year 2014 Publication Forest Ecology and Management Abbreviated Journal For. Ecol. Manage.
Volume 315 Issue Pages 202-210
Keywords Bamboo; Community forest management; Guadua; Logging; Timber management; Tropical forest
Abstract Guadua sarcocarpa and Guadua weberbaueri (Poaceae: Bambuseae) have a negative influence on tree regeneration and recruitment in bamboo-dominated forests of southwestern Amazonia. The lack of advanced regeneration and sparse canopy in this forest type present a considerable challenge for developing sustainable timber management plans. We conducted field studies in the Porto Dias Agroextractive Settlement Project in Acre, Brazil to assess influences of logging in bamboo-dominated forest sites. Taxonomic composition, stand structure, aboveground biomass, commercial timber volume, and commercial tree seedling and bamboo culm density were compared between five logged vs. unlogged sites in different landholdings, using modified 0.5. ha Gentry plots. No differences in taxonomic composition, aboveground biomass, adult and juvenile stem density, or woody seedling and bamboo culm density were detected between paired logged and unlogged sites. Commercial timber volume, however, was reduced by almost two-thirds in logged plots, suggesting that long-term timber management goals in this forest type are compromised since so few future crop trees remained onsite. Our findings indicate that in order to maximize local management objectives, community forest managers must approach logging in bamboo-dominated forests with caution. We suggest an integration of non-timber forest product extraction with low harvest intensity and low-impact logging, tending of natural regeneration, and diversification of commercial species. © 2014 Elsevier B.V.
Address INRA, UMR Ecologie des Forêts de Guyane, 97387 Kourou Cedex, French Guiana
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ISSN 03781127 (Issn) ISBN Medium
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Notes Export Date: 15 February 2014; Source: Scopus; Coden: Fecmd; Language of Original Document: English; Correspondence Address: Rockwell, C.A.; School of Forest Resources and Conservation, University of Florida, Gainesville, FL 32611, United States; email: rockwell_cara@yahoo.com; Funding Details: DGE-0221599, NSF, National Science Foundation Approved no
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Author Rowland, L.; Hill, T.C.; Stahl, C.; Siebicke, L.; Burban, B.; Zaragoza-Castells, J.; Ponton, S.; Bonal, D.; Meir, P.; Williams, M.
Title Evidence for strong seasonality in the carbon storage and carbon use efficiency of an Amazonian forest Type Journal Article
Year 2014 Publication Global Change Biology Abbreviated Journal Global Change Biol.
Volume 20 Issue 3 Pages 979-991
Keywords Carbon use efficiency; Dalec; Data assimilation; Ecosystem respiration; French Guiana; Seasonal carbon fluxes; Tropical forest
Abstract The relative contribution of gross primary production and ecosystem respiration to seasonal changes in the net carbon flux of tropical forests remains poorly quantified by both modelling and field studies. We use data assimilation to combine nine ecological time series from an eastern Amazonian forest, with mass balance constraints from an ecosystem carbon cycle model. The resulting analysis quantifies, with uncertainty estimates, the seasonal changes in the net carbon flux of a tropical rainforest which experiences a pronounced dry season. We show that the carbon accumulation in this forest was four times greater in the dry season than in the wet season and that this was accompanied by a 5% increase in the carbon use efficiency. This seasonal response was caused by a dry season increase in gross primary productivity, in response to radiation and a similar magnitude decrease in heterotrophic respiration, in response to drying soils. The analysis also predicts increased carbon allocation to leaves and wood in the wet season, and greater allocation to fine roots in the dry season. This study demonstrates implementation of seasonal variations in parameters better enables models to simulate observed patterns in data. In particular, we highlight the necessity to simulate the seasonal patterns of heterotrophic respiration to accurately simulate the net carbon flux seasonal tropical forest. © 2013 The Authors Global Change Biology Published by John Wiley & Sons Ltd.
Address Research School of Biology, Division of Plant Sciences, Australian National University, Canberra, ACT, 0200, Australia
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Notes Cited By (since 1996):1; Export Date: 24 February 2014; Source: Scopus; Language of Original Document: English; Correspondence Address: Rowland, L.; School of Geosciences, University of Edinburgh, Edinburgh, EH9 3JN, United Kingdom; email: lucy.rowland@ed.ac.uk; Funding Details: FT110100457, ARC, Australian Research Council; Funding Details: NE/F002149/1, NERC, Natural Environment Research Council; Funding Details: NE/J011002/1, NERC, Natural Environment Research Council Approved no
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Author Lamarre, G.P.A.; Mendoza, I.; Fine, P.V.A.; Baraloto, C.
Title Leaf synchrony and insect herbivory among tropical tree habitat specialists Type Journal Article
Year 2014 Publication Plant Ecology Abbreviated Journal Plant Ecol.
Volume 215 Issue 2 Pages 209-220
Keywords Escape; French Guiana; Herbivorous insects; Phenology; Resource availability; Time lag
Abstract Growth defense tradeoff theory predicts that plants in low-resource habitats invest more energy in defense mechanisms against natural enemies than growth, whereas plants in high-resource habitats can afford higher leaf loss rates. A less-studied defense against herbivores involves the synchrony of leaf production, which can be an effective defense strategy if leaf biomass production exceeds the capacity of consumption by insects. The aim of this study was to determine whether leaf synchrony varied across habitats with different available resources and whether insects were able to track young leaf production among tree habitat specialists in a tropical forest of French Guiana. We predicted that high-resource habitats would exhibit more synchrony in leaf production due to the low cost and investment to replace leaf tissue. We also expected closer patterns of leaf synchrony and herbivory within related species, assuming that they shared herbivores. We simultaneously monitored leaf production and herbivory rates of five pairs of tree species, each composed of a specialist of terra firme or white-sand forests within the same lineage. Our prediction was not supported by the strong interaction of habitat and lineage for leaf synchrony within individuals of the same species; although habitat specialists differed in leaf synchrony within four of five lineages, the direction of the effect was variable. All species showed short time lags for the correlation between leaf production and herbivory, suggesting that insects are tightly tracking leaf production, especially for the most synchronous species. Leaf synchrony may provide an important escape defense against herbivores, and its expression appears to be constrained by both evolutionary history and environmental factors. © 2014 Springer Science+Business Media Dordrecht.
Address Department of Biology, University of Florida, Gainesville, FL, 32611, United States
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Notes Export Date: 24 February 2014; Source: Scopus; Coden: Plecf; Language of Original Document: English; Correspondence Address: Lamarre, G. P. A.; Université Antilles Guyane, UMR Ecologie des Forêts de Guyane, 97310 Kourou, French Guiana; email: greglamarre973@gmail.com; Funding Details: DEB-0743103/0743800, NSF, National Science Foundation Approved no
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Author Fortunel, C.; Ruelle, J.; Beauchene, J.; Fine, P.V.A.; Baraloto, C.
Title Wood specific gravity and anatomy of branches and roots in 113 Amazonian rainforest tree species across environmental gradients Type Journal Article
Year 2014 Publication New Phytologist Abbreviated Journal New Phytol.
Volume 202 Issue 1 Pages 79-94
Keywords Amazonian forests; Branch; Environmental gradients; Neotropical trees; Root; Wood anatomical traits; Wood density; Wood functions
Abstract Wood specific gravity (WSG) is a strong predictor of tree performance across environmental gradients. Yet it remains unclear how anatomical elements linked to different wood functions contribute to variation in WSG in branches and roots across tropical forests. We examined WSG and wood anatomy in white sand, clay terra firme and seasonally flooded forests in French Guiana, spanning broad environmental gradients found throughout Amazonia. We measured 15 traits relating to branches and small woody roots in 113 species representing the 15 most abundant species in each habitat and representative species from seven monophyletic lineages occurring in all habitats. Fiber traits appear to be major determinants of WSG, independent of vessel traits, in branches and roots. Fiber traits and branch and root WSG increased from seasonally flooded species to clay terra firme species and lastly to white sand species. Branch and root wood traits were strongly phylogenetically constrained. Lineages differed in wood design, but exhibited similar variation in wood structure across habitats. We conclude that tropical trees can invest differently in support and transport to respond to environmental conditions. Wind disturbance and drought stress represent significant filters driving tree distribution of Amazonian forests; hence we suggest that biophysical explanations should receive more attention. © 2013 New Phytologist Trust.
Address Department of Biology, University of Florida, Gainesville, FL, 32611, United States
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Notes Export Date: 10 March 2014; Source: Scopus; Coden: Nepha; Language of Original Document: English; Correspondence Address: Fortunel, C.; INRA, UMR Ecologie des Forêts de Guyane, BP 709, Kourou Cedex, 97387, France; email: claire.fortunel@ecofog.gf; Funding Details: DEB-0743103, NSF, National Science Foundation; Funding Details: DEB-0743800, NSF, National Science Foundation Approved no
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