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Author Yatabe, Y.; Kane, N.C.; Scotti-Saintagne, C.; Rieseberg, L.H. openurl 
  Title Rampant gene exchange across a strong reproductive barrier between the annual sunflowers, Helianthus annuus and H-petiolaris Type Journal Article
  Year 2007 Publication Genetics Abbreviated Journal Genetics  
  Volume 175 Issue 4 Pages 1883-1893  
  Keywords  
  Abstract Plant species may remain morphologically distinct despite gene exchange with congeners, yet little is known about the genomewide pattern of introgression among species. Here we analyze the effects of persistent gene flow on genomic differentiation between the sympatric sunflower species Helianthus annuus and H. petiolaris. While the species are strongly isolated in testcrosses, genetic distances at 108 microsatellite loci and 14 sequenced genes are highly variable and much lower (on average) than for more closely related but historically allopatric congeners. Our analyses failed to detect a positive association between levels of genetic differentiation and chromosomal rearrangements (as reported in a prior publication) or proximity to QTL for morphological differences or hybrid sterility. However, a significant increase in differentiation was observed for markers within 5 cM of chromosomal breakpoints. Together, these results suggest that islands of differentiation between these two species are small, except in areas of low recombination. Furthermore, only microsatellites associated with ESTs were identified as outlier loci in tests for selection, which might indicate that the ESTs themselves are the targets of selection rather than linked genes (or that coding regions are not randomly distributed). In general, these results indicate that even strong and genetically complex reproductive barriers cannot prevent widespread introgression.  
  Address Indiana Univ, Dept Biol, Bloomington, IN 47405 USA, Email: lriesebe@indiana.edu  
  Corporate Author Thesis  
  Publisher (down) GENETICS Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0016-6731 ISBN Medium  
  Area Expedition Conference  
  Notes ISI:000246448800029 Approved no  
  Call Number EcoFoG @ eric.marcon @ Serial 216  
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Author Scotti-Saintagne, C.; Mariette, S.; Porth, I.; Goicoechea, P.G.; Barreneche, T.; Bodenes, K.; Burg, K.; Kremer, A. openurl 
  Title Genome scanning for interspecific differentiation between two closely related oak species [Quercus robur L. and Q petraea (Matt.) Liebl.] Type Journal Article
  Year 2004 Publication Genetics Abbreviated Journal Genetics  
  Volume 168 Issue 3 Pages 1615-1626  
  Keywords  
  Abstract Interspecific differentiation values (G(ST)) between two closely related oak species (Quercus petraea and Q. robur) were compiled across different studies with the aim to explore the distribution of differentiation at the genome level. The study was based on a total set of 389 markers (isozymes, AFLPs, SCARs, microsatellites, and SNPs) for which allelic frequencies were estimated in pairs of populations sampled throughout the sympatric distribution of the two species. The overall distribution of GST values followed an L-shaped curve with most markers exhibiting low species differentiation (G(ST) < 0.01) and only a few loci reaching >10% levels. Twelve percent of the loci exhibited significant G(ST) deviations to neutral expectations, suggesting that selection contributed to species divergence. Coding regions expressed higher differentiation than noncoding regions. Among the 389 markers, 158 could be mapped on the 12 linkage groups of the existing Q. robur genetic map. Outlier loci with large G, values were distributed over 9 linkage groups. One cluster of three outlier loci was found within 0.51 cM; but significant autocorrelation of GST was observed at distances <2 cM. The size and distribution of genomic regions involved in species divergence are discussed in reference to hitchhiking effects and disruptive selection.  
  Address INRA, UMR Biodivers Genes & Ecosyst, F-33612 Cestas, France, Email: kremer@pierronton.inra.fr  
  Corporate Author Thesis  
  Publisher (down) GENETICS Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0016-6731 ISBN Medium  
  Area Expedition Conference  
  Notes ISI:000225767400041 Approved no  
  Call Number EcoFoG @ eric.marcon @ Serial 258  
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Author Herault, B.; Thoen, D. openurl 
  Title How habitat area, local and regional factors shape plant assemblages in isolated closed depressions Type Journal Article
  Year 2009 Publication Acta Oecologica-International Journal of Ecology Abbreviated Journal Acta Oecol.-Int. J. Ecol.  
  Volume 35 Issue 3 Pages 385-392  
  Keywords Closed depressions; Colonization; Connectivity; Fragmented habitats; Emergent Groups; Open and forested landscape; Life-history traits  
  Abstract Classifying species by shared life-history traits is important if common ecological response groups are to be identified among different species. We investigated how habitat area, local and regional factors shape plant communities in small isolated closed depressions, and how the species richness is related to the interplay between environmental factors and specific life-history trait combinations. In Central-Western Europe, 169 closed depressions were completely Surveyed for plant presence in two highly contrasted landscapes (forested and open landscapes). All species were clustered into 9 Emergent Groups based oil 10 life-history traits related to plant dispersal, establishment and persistence. Habitat areas were related to species presence using logistic regressions. Most Emergent Groups were more area-dependent in open than in forested landscapes, owing to heterogeneous light levels in forest weakening the species-area relationship. In open landscapes, Floating Hydrophytes were severely underrepresented in very small depressions, owing to the absence of waterfowl poulation. Local environmental and regional factors were related to species richness using Generalized Linear Models. In open landscapes, local environmental factors such as water conductivity or soil productivity are respectively the main predictors. In forested landscapes, the abundance of most Emergent Groups Was better predicted by regional factors, i.e., habitat connectivity and distance to the forest edge. Forested landscapes strongly impeded the closed depressions' colonization by the less mobile Emergent Groups Such as Large-seeded Perennials. (C) 2009 Elsevier Masson SAS. All rights reserved.  
  Address [Herault, Bruno] Univ Antilles Guyane, UMR EcoFoG, F-97387 Kourou, France, Email: bruno.herault@ecofog.gf  
  Corporate Author Thesis  
  Publisher (down) GAUTHIER-VILLARS/EDITIONS ELSEVIER Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 1146-609X ISBN Medium  
  Area Expedition Conference  
  Notes ISI:000266174400006 Approved no  
  Call Number EcoFoG @ eric.marcon @ Serial 112  
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Author Bréchet, L.; Courtois, E.A.; Saint-Germain, T.; Janssens, I.A.; Asensio, D.; Ramirez-Rojas, I.; Soong, J.L.; Van Langenhove, L.; Verbruggen, E.; Stahl, C. pdf  url
doi  openurl
  Title Disentangling Drought and Nutrient Effects on Soil Carbon Dioxide and Methane Fluxes in a Tropical Forest Type Journal Article
  Year 2019 Publication Frontiers in Environmental Science Abbreviated Journal Front. Environ. Sci.  
  Volume 7 Issue 180 Pages  
  Keywords carbon dioxide; drought; fertilization; methane; nitrogen; phosphorus; soil GHG fluxes; tropical forest  
  Abstract Tropical soils are a major contributor to the balance of greenhouse gas (GHG) fluxes in the atmosphere. Models of tropical GHG fluxes predict that both the frequency of drought events and changes in atmospheric deposition of nitrogen (N) will significantly affect dynamics of soil carbon dioxide (CO2) and methane (CH4) production and consumption. In this study, we examined the combined effect of a reduction in precipitation and an increase in nutrient availability on soil CO2 and CH4 fluxes in a primary French Guiana tropical forest. Drought conditions were simulated by intercepting precipitation falling through the forest canopy with tarpaulin roofs. Nutrient availability was manipulated through application of granular N and/or phosphorus (P) fertilizer to the soil. Soil water content (SWC) below the roofs decreased rapidly and stayed at continuously low values until roof removal, which as a consequence roughly doubled the duration of the dry season. After roof removal, SWC slowly increased but remained lower than in the control soils even after 2.5 months of wet-season precipitation. We showed that drought-imposed reduction in SWC decreased the CO2 emissions (i.e., CO2 efflux), but strongly increased the CH4 emissions. N, P, and N × P (i.e., NP) additions all significantly increased CO2 emission but had no effect on CH4 fluxes. In treatments where both fertilization and drought were applied, the positive effect of N, P, and NP fertilization on CO2 efflux was reduced. After roof removal, soil CO2 efflux was more resilient in the control plots than in the fertilized plots while there was only a modest effect of roof removal on soil CH4 fluxes. Our results suggest that a combined increase in drought and nutrient availability in soil can locally increase the emissions of both CO2 and CH4 from tropical soils, for a long term.  
  Address Lawrence Berkeley National Laboratory, Climate and Ecosystem Science Division, Berkeley, CA, United States  
  Corporate Author Thesis  
  Publisher (down) Frontiers Media S.A. Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 2296665x (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Export Date: 16 December 2019; Correspondence Address: Bréchet, L.; Centre of Excellence PLECO (Plant and Ecosystems), Department of Biology, University of AntwerpBelgium; email: laeti.brechet@gmail.com Approved no  
  Call Number EcoFoG @ webmaster @ Serial 899  
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Author Ziegler, C.; Dusenge, M.E.; Nyirambangutse, B.; Zibera, E.; Wallin, G.; Uddling, J. doi  openurl
  Title Contrasting Dependencies of Photosynthetic Capacity on Leaf Nitrogen in Early- and Late-Successional Tropical Montane Tree Species Type Journal Article
  Year 2020 Publication Frontiers in Plant Science Abbreviated Journal Front. Plant Sci.  
  Volume 11 Issue Pages 500479  
  Keywords allocation; early successional; late successional; nitrogen; photosynthesis; tropical montane forests  
  Abstract Differences in photosynthetic capacity among tree species and tree functional types are currently assumed to be largely driven by variation in leaf nutrient content, particularly nitrogen (N). However, recent studies indicate that leaf N content is often a poor predictor of variation in photosynthetic capacity in tropical trees. In this study, we explored the relative importance of area-based total leaf N content (Ntot) and within-leaf N allocation to photosynthetic capacity versus light-harvesting in controlling the variation in photosynthetic capacity (i.e. Vcmax, Jmax) among mature trees of 12 species belonging to either early (ES) or late successional (LS) groups growing in a tropical montane rainforest in Rwanda, Central Africa. Photosynthetic capacity at a common leaf temperature of 25˚C (i.e. maximum rates of Rubisco carboxylation, Vcmax25 and of electron transport, Jmax25) was higher in ES than in LS species (+ 58% and 68% for Vcmax25 and Jmax25, respectively). While Ntot did not significantly differ between successional groups, the photosynthetic dependency on Ntot was markedly different. In ES species, Vcmax25 was strongly and positively related to Ntot but this was not the case in LS species. However, there was no significant trade-off between relative leaf N investments in compounds maximizing photosynthetic capacity versus compounds maximizing light harvesting. Both leaf dark respiration at 25˚C (+ 33%) and, more surprisingly, apparent photosynthetic quantum yield (+ 35%) was higher in ES than in LS species. Moreover, Rd25 was positively related to Ntot for both ES and LS species. Our results imply that efforts to quantify carbon fluxes of tropical montane rainforests would be improved if they considered contrasting within-leaf N allocation and photosynthetic Ntot dependencies between species with different successional strategies. © Copyright © 2020 Ziegler, Dusenge, Nyirambangutse, Zibera, Wallin and Uddling.  
  Address Department of Biology, The University of Western Ontario, London, ON, Canada  
  Corporate Author Thesis  
  Publisher (down) Frontiers Media S.A. Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 1664462x (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 953  
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Author Picard, Nicolas ; Mortier, Frédéric ; Ploton, Pierre ; Liang, Jingjing ; Derroire, Géraldine ; Bastin, Jean-François ; Ayyappan, Narayanan ; Bénédet, Fabrice ; Bosela, Faustin Boyemba ; Clark, Connie J. ; Crowther, Thomas W. ; Obiang, Nestor Laurier Engone ; Forni, Eric ; Harris, David ; Ngomanda, Alfred ; Poulsen, John R. ; Sonké, Bonaventure ; Couteron, Pierre ; Gourley-Fleury, Sylvie doi  openurl
  Title Using Model Analysis to Unveil Hidden Patterns in Tropical Forest structures Type Journal Article
  Year 2021 Publication Frontiers in Ecology and Evolution Abbreviated Journal  
  Volume 9 Issue Pages 599200  
  Keywords  
  Abstract When ordinating plots of tropical rain forests using stand-level structural attributes such as biomass, basal area and the number of trees in different size classes, two patterns often emerge: a gradient from poorly to highly stocked plots and high positive correlations between biomass, basal area and the number of large trees. These patterns are inherited from the demographics (growth, mortality and recruitment) and size allometry of trees and tend to obscure other patterns, such as site differences among plots, that would be more informative for inferring ecological processes. Using data from 133 rain forest plots at nine sites for which site differences are known, we aimed to filter out these patterns in forest structural attributes to unveil a hidden pattern. Using a null model framework, we generated the anticipated pattern inherited from individual allometric patterns. We then evaluated deviations between the data (observations) and predictions of the null model. Ordination of the deviations revealed site differences that were not evident in the ordination of observations. These sites differences could be related to different histories of large-scale forest disturbance. By filtering out patterns inherited from individuals, our model analysis provides more information on ecological processes  
  Address  
  Corporate Author Thesis  
  Publisher (down) Frontiers Media Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 1029  
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Author Heu, Katy ; Romoli, Ottavia ; Schonbeck, Johan Claes ; Ajenoe, Rachel ; Epelboin, Yanouk ; Kircher, Verena ; Houel, Emeline ; Estevez, Yannick ; Gendrin, Mathilde doi  openurl
  Title The Effect of Secondary Metabolites Produced by Serratia marcescens on Aedes aegypti and Its Microbiota Type Journal Article
  Year 2021 Publication Frontiers in Microbiology Abbreviated Journal  
  Volume 12 Issue Pages 645701  
  Keywords  
  Abstract Serratia marcescens is a bacterial species widely found in the environment, which very efficiently colonizes mosquitoes. In this study, we isolated a red-pigmented S. marcescens strain from our mosquito colony (called S. marcescens VA). This red pigmentation is caused by the production of prodigiosin, a molecule with antibacterial properties. To investigate the role of prodigiosin on mosquito- S. marcescens interactions, we produced two white mutants of S. marcescens VA by random mutagenesis. Whole genome sequencing and chemical analyses suggest that one mutant has a nonsense mutation in the gene encoding prodigiosin synthase, while the other one is deficient in the production of several types of secondary metabolites including prodigiosin and serratamolide. We used our mutants to investigate how S. marcescens secondary metabolites affect the mosquito and its microbiota. Our in vitro tests indicated that S. marcescens VA inhibits the growth of several mosquito microbiota isolates using a combination of prodigiosin and other secondary metabolites, corroborating published data. This strain requires secondary metabolites other than prodigiosin for its proteolytic and hemolytic activities. In the mosquito, we observed that S. marcescens VA is highly virulent to larvae in a prodigiosin-dependent manner, while its virulence on adults is lower and largely depends on other metabolites  
  Address  
  Corporate Author Thesis  
  Publisher (down) Frontiers Media Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 1024  
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Author Chanson, Anaïs ; Moreau, Corrie S. ; Duplais, Christophe doi  openurl
  Title Assessing Biosynthetic Gene Cluster Diversity of Specialized Metabolites in the Conserved Gut Symbionts of Herbivorous Turtle Ants Type Journal Article
  Year 2021 Publication Frontiers in Microbiology Abbreviated Journal  
  Volume 12 Issue Pages 678100  
  Keywords insect-microbe mutualism, ants, metagemonic, biosynthetic gene cluster, gut bacteria, Cephalotes  
  Abstract Cephalotes are herbivorous ants (>115 species) feeding on low-nitrogen food sources, and they rely on gut symbionts to supplement their diet by recycling nitrogen food waste into amino acids. These conserved gut symbionts, which encompass five bacterial orders, have been studied previously for their primary nitrogen metabolism; however, little is known about their ability to biosynthesize specialized metabolites which can play a role in bacterial interactions between communities living in close proximity in the gut. To evaluate the biosynthetic potential of their gut symbionts, we mine 14 cultured isolate genomes and gut metagenomes across 17 Cephalotes species to explore the biodiversity of biosynthetic gene clusters (BGCs) producing specialized metabolites. The diversity of BGCs across Cephalotes phylogeny was analyzed using sequence similarity networking and BGC phylogenetic reconstruction. Our results reveal that the conserved gut symbionts involved in the nutritional symbiosis possess 80% of all the 233 BGCs retrieved in this work. Furthermore, the phylogenetic analysis of BGCs reveals different patterns of distribution, suggesting different mechanisms of conservation. A siderophore BGC shows high similarity in a single symbiont across different ant host species, whereas a BGC encoding the production of non-ribosomal peptides (NRPs) found different symbionts within a single host species. Additionally, BGCs were abundant in four of the five bacterial orders of conserved symbionts co-occurring in the hindgut. However, one major symbiont localized alone in the midgut lack BGCs. Because the spatial isolation prevents direct interaction with other symbionts, this result supports the idea that BGCs are maintained in bacteria living in close proximity but are dispensable for an alone-living symbiont. These findings together pave the way for studying the mechanisms of BGC conservation and evolution in gut bacterial genomes associated with Cephalotes. This work also provides a genetic background for further study, aiming to characterize bacterial specialized metabolites and to understand their functional role in multipartite mutualisms between conserved gut symbionts and Cephalotes turtle ants.  
  Address  
  Corporate Author Thesis  
  Publisher (down) Frontiers Media Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 1049  
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Author Millet, J.; Pascal, J.P.; Kiet, L.C. openurl 
  Title Effects of Disturbance Over 60 Years on a Lowland Forest in Southern Vietnam Type Journal Article
  Year 2010 Publication Journal of Tropical Forest Science Abbreviated Journal J. Trop. For. Sci.  
  Volume 22 Issue 3 Pages 237-246  
  Keywords Lowland tropical forest; disturbance impact; floristic composition; forest structure; Tan Phu forest  
  Abstract MILLET J, PASCAL JP & MET LC. 2010. Effects of disturbance over 60 years on a lowland forest in southern Vietnam. Tropical lowland forests are some of the most threatened in the world and this is particularly the case in Vietnam. This study aimed to identify changes in species composition and forest structure in the Tan Phu lowland forest resulting from disturbance over a 60 year period. Analysis of forest composition and structure rely on data from 25 plots of 0.5-ha size established in a lowland secondary forest. The five forest stands described differed greatly from the three forest stand types described in 1943. Some long-lived shade-tolerant species had been replaced by pioneer species, such as Cratoxylon formosum and Shorea roxburghii. In addition to altering composition, forest disturbances had resulted in large changes in forest structure. While in the past, forest stands had a large number of exploitable trees, current forest stands have few trees in the diameter class > 50 cm and sometimes no trees in the diameter class > 80 cm. This paper provides notable results on forest tree ecology, forest dynamics and on the state of secondary forests in Vietnam. This is particularly important as future goods and services will increasingly have to come from such forests.  
  Address [Millet, J.] Univ Lyon 1, F-69622 Villeurbanne, France, Email: jerome.millet@ird.if  
  Corporate Author Thesis  
  Publisher (down) FOREST RESEARCH INST MALAYSIA Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0128-1283 ISBN Medium  
  Area Expedition Conference  
  Notes ISI:000280653200003 Approved no  
  Call Number EcoFoG @ webmaster @ Serial 283  
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Author Sellan, G. ; Brearley, FQ. ; Nilus, R. ; Ttin, J. ; Majalap-Lee, N. doi  openurl
  Title Differences in soil properties among contrasting soil types in Northern Borneo Type Journal Article
  Year 2021 Publication Journal of Tropical Forest Science Abbreviated Journal  
  Volume 33 Issue 2 Pages 191-202  
  Keywords  
  Abstract Soil in the tropics is high in diversity, and despite the diversity of Borneo’s forest–soil associations, there is a paucity of data on its soil properties. We investigated the differences between three soil types in the Kabili–Sepilok Forest Reserve, Sabah, Malaysia, encompassing the contrasting alluvial, sandstone and heath forest typologies. We examined the distribution of nutrients between soil types and through soil depths, and assessed the extent of spatial autocorrelation in the three soil types. We confirmed the fertility gradient from alluvial to heath forest soil found by others. Soil elemental concentrations declined in deeper horizons with the exception of exchangeable sodium and aluminium that remained constant through alluvial and sandstone soil profiles. Spatial autocorrelation was present in all three soil types and strongest in the sandstone soil. Overall, we show how bedrock, erosion, leaching and topography influence soil properties across this mosaic of soil types and note their importance in influencing tree communities and their ecological functioning.  
  Address  
  Corporate Author Thesis  
  Publisher (down) FOREST RESEARCH INST MALAYSIA Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0128-1283 ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 1017  
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