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Fu, T.; Houel, E.; Amusant, N.; Touboul, D.; Genta-Jouve, G.; Della-Negra, S.; Fisher, G.L.; Brunelle, A.; Duplais, C. |
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Title |
Biosynthetic investigation of γ-lactones in Sextonia rubra wood using in situ TOF-SIMS MS/MS imaging to localize and characterize biosynthetic intermediates |
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Journal Article |
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2019 |
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Scientific Reports |
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Sci. Rep. |
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9 |
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1928 |
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Molecular analysis by parallel tandem mass spectrometry (MS/MS) imaging contributes to the in situ characterization of biosynthetic intermediates which is crucial for deciphering the metabolic pathways in living organisms. We report the first use of TOF-SIMS MS/MS imaging for the cellular localization and characterization of biosynthetic intermediates of bioactive γ-lactones rubrynolide and rubrenolide in the Amazonian tree Sextonia rubra (Lauraceae). Five γ-lactones, including previously reported rubrynolide and rubrenolide, were isolated using a conventional approach and their structural characterization and localization at a lateral resolution of ~400 nm was later achieved using TOF-SIMS MS/MS imaging analysis. 2D/3D MS imaging at subcellular level reveals that putative biosynthetic γ-lactones intermediates are localized in the same cell types (ray parenchyma cells and oil cells) as rubrynolide and rubrenolide. Consequently, a revised metabolic pathway of rubrynolide was proposed, which involves the reaction between 2-hydroxysuccinic acid and 3-oxotetradecanoic acid, contrary to previous studies suggesting a single polyketide precursor. Our results provide insights into plant metabolite production in wood tissues and, overall, demonstrate that combining high spatial resolution TOF-SIMS imaging and MS/MS structural characterization offers new opportunities for studying molecular and cellular biochemistry in plants. © 2019, The Author(s). |
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Physical Electronics, Chanhassen, MN 55317, United States |
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Nature Publishing Group |
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20452322 (Issn) |
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EcoFoG @ webmaster @ |
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866 |
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Rodrigues, A.M.S.; Eparvier, V.; Odonne, G.; Amusant, N.; Stien, D.; Houël, E. |
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The antifungal potential of (Z)-ligustilide and the protective effect of eugenol demonstrated by a chemometric approach |
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Journal Article |
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2019 |
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Scientific Reports |
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Sci. Rep. |
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9 |
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8729 |
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Mankind is on the verge of a postantibiotic era. New concepts are needed in our battle to attenuate infectious diseases around the world and broad spectrum plant-inspired synergistic pharmaceutical preparations should find their place in the global fight against pathogenic microorganisms. To progress towards the discovery of potent antifungal agents against human pathologies, we embarked upon developing chemometric approach coupled with statistical design to unravel the origin of the anticandidal potential of a set of 66 essential oils (EOs). EOs were analyzed by GC-MS and tested against Candida albicans and C. parapsilosis (Minimal Inhibitory Concentration, MIC). An Orthogonal Partial Least Square (OPLS) analysis allowed us to identify six molecules presumably responsible for the anticandidal activity of the oils: (Z)-ligustilide, eugenol, eugenyl acetate, citral, thymol, and β-citronellol. These compounds were combined following a full factorial experimental design approach in order to optimize the anticandidal activity and selectivity index (SI = IC50(MRC5 cells)/MIC) through reconstituted mixtures. (Z)-Ligustilide and citral were the most active compounds, while (Z)-ligustilide and eugenol were the two main factors that most contributed to the increase of the SI. These two terpenes can, therefore, be used to construct bioinspired synergistic anticandidal mixtures. © 2019, The Author(s). |
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CNRS, UMR EcoFoG, AgroParisTech, Cirad, INRA, Université des Antilles, Université de Guyane, Cayenne, 97300, France |
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Nature Publishing Group |
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Ter Steege, H.; Henkel, T.W.; Helal, N.; Marimon, B.S.; Marimon-Junior, B.H.; Huth, A.; Groeneveld, J.; Sabatier, D.; Coelho, L.S.; Filho, D.A.L.; Salomão, R.P.; Amaral, I.L.; Matos, F.D.A.; Castilho, C.V.; Phillips, O.L.; Guevara, J.E.; Carim, M.J.V.; Cárdenas López, D.; Magnusson, W.E.; Wittmann, F.; Irume, M.V.; Martins, M.P.; Guimarães, J.R.D.S.; Molino, J.-F.; Bánki, O.S.; Piedade, M.T.F.; Pitman, N.C.A.; Mendoza, A.M.; Ramos, J.F.; Luize, B.G.; Moraes de Leão Novo, E.M.; Núñez Vargas, P.; Silva, T.S.F.; Venticinque, E.M.; Manzatto, A.G.; Reis, N.F.C.; Terborgh, J.; Casula, K.R.; Honorio Coronado, E.N.; Montero, J.C.; Feldpausch, T.R.; Duque, A.; Costa, F.R.C.; Arboleda, N.C.; Schöngart, J.; Killeen, T.J.; Vasquez, R.; Mostacedo, B.; Demarchi, L.O.; Assis, R.L.; Baraloto, C.; Engel, J.; Petronelli, P.; Castellanos, H.; de Medeiros, M.B.; Quaresma, A.; Simon, M.F.; Andrade, A.; Camargo, J.L.; Laurance, S.G.W.; Laurance, W.F.; Rincón, L.M.; Schietti, J.; Sousa, T.R.; de Sousa Farias, E.; Lopes, M.A.; Magalhães, J.L.L.; Mendonça Nascimento, H.E.; Lima de Queiroz, H.; Aymard C, G.A.; Brienen, R.; Revilla, J.D.C.; Vieira, I.C.G.; Cintra, B.B.L.; Stevenson, P.R.; Feitosa, Y.O.; Duivenvoorden, J.F.; Mogollón, H.F.; Araujo-Murakami, A.; Ferreira, L.V.; Lozada, J.R.; Comiskey, J.A.; de Toledo, J.J.; Damasco, G.; Dávila, N.; Draper, F.; García-Villacorta, R.; Lopes, A.; Vicentini, A.; Alonso, A.; Dallmeier, F.; Gomes, V.H.F.; Lloyd, J.; Neill, D.; de Aguiar, D.P.P.; Arroyo, L.; Carvalho, F.A.; de Souza, F.C.; do Amaral, D.D.; Feeley, K.J.; Gribel, R.; Pansonato, M.P.; Barlow, J.; Berenguer, E.; Ferreira, J.; Fine, P.V.A.; Guedes, M.C.; Jimenez, E.M.; Licona, J.C.; Peñuela Mora, M.C.; Villa, B.; Cerón, C.; Maas, P.; Silveira, M.; Stropp, J.; Thomas, R.; Baker, T.R.; Daly, D.; Dexter, K.G.; Huamantupa-Chuquimaco, I.; Milliken, W.; Pennington, T.; Ríos Paredes, M.; Fuentes, A.; Klitgaard, B.; Pena, J.L.M.; Peres, C.A.; Silman, M.R.; Tello, J.S.; Chave, J.; Cornejo Valverde, F.; Di Fiore, A.; Hilário, R.R.; Phillips, J.F.; Rivas-Torres, G.; van Andel, T.R.; von Hildebrand, P.; Noronha, J.C.; Barbosa, E.M.; Barbosa, F.R.; de Matos Bonates, L.C.; Carpanedo, R.S.; Dávila Doza, H.P.; Fonty, É.; GómeZárate Z, R.; Gonzales, T.; Gallardo Gonzales, G.P.; Hoffman, B.; Junqueira, A.B.; Malhi, Y.; Miranda, I.P.A.; Pinto, L.F.M.; Prieto, A.; Rodrigues, D.J.; Rudas, A.; Ruschel, A.R.; Silva, N.; Vela, C.I.A.; Vos, V.A.; Zent, E.L.; Zent, S.; Weiss Albuquerque, B.; Cano, A.; Carrero Márquez, Y.A.; Correa, D.F.; Costa, J.B.P.; Flores, B.M.; Galbraith, D.; Holmgren, M.; Kalamandeen, M.; Nascimento, M.T.; Oliveira, A.A.; Ramirez-Angulo, H.; Rocha, M.; Scudeller, V.V.; Sierra, R.; Tirado, M.; Umaña Medina, M.N.; van der Heijden, G.; Vilanova Torre, E.; Vriesendorp, C.; Wang, O.; Young, K.R.; Ahuite Reategui, M.A.; Baider, C.; Balslev, H.; Cárdenas, S.; Casas, L.F.; Farfan-Rios, W.; Ferreira, C.; Linares-Palomino, R.; Mendoza, C.; Mesones, I.; Torres-Lezama, A.; Giraldo, L.E.U.; Villarroel, D.; Zagt, R.; Alexiades, M.N.; de Oliveira, E.A.; Garcia-Cabrera, K.; Hernandez, L.; Palacios Cuenca, W.; Pansini, S.; Pauletto, D.; Ramirez Arevalo, F.; Sampaio, A.F.; Sandoval, E.H.V.; Valenzuela Gamarra, L.; Levesley, A.; Pickavance, G.; Melgaço, K. |
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Title |
Rarity of monodominance in hyperdiverse Amazonian forests |
Type |
Journal Article |
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Year |
2019 |
Publication |
Scientific reports |
Abbreviated Journal |
Scientific reports |
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Volume |
9 |
Issue |
1 |
Pages |
13822 |
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Tropical forests are known for their high diversity. Yet, forest patches do occur in the tropics where a single tree species is dominant. Such “monodominant” forests are known from all of the main tropical regions. For Amazonia, we sampled the occurrence of monodominance in a massive, basin-wide database of forest-inventory plots from the Amazon Tree Diversity Network (ATDN). Utilizing a simple defining metric of at least half of the trees over 10cm diameter belonging to one species, we found only a few occurrences of monodominance in Amazonia, and the phenomenon was not significantly linked to previously hypothesized life history traits such wood density, seed mass, ectomycorrhizal associations, or Rhizobium nodulation. In our analysis, coppicing (the formation of sprouts at the base of the tree or on roots) was the only trait significantly linked to monodominance. While at specific locales coppicing or ectomycorrhizal associations may confer a considerable advantage to a tree species and lead to its monodominance, very few species have these traits. Mining of the ATDN dataset suggests that monodominance is quite rare in Amazonia, and may be linked primarily to edaphic factors. |
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Department of Biology, University of Missouri, St. Louis, MO, 63121, USA |
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Export Date: 7 October 2019 |
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EcoFoG @ webmaster @ |
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887 |
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Aubry-Kientz, M.; Rossi, V.; Cornu, G.; Wagner, F.; Herault, B. |
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Temperature rising would slow down tropical forest dynamic in the Guiana Shield |
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Journal Article |
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Year |
2019 |
Publication |
Scientific Reports |
Abbreviated Journal |
Sci. Rep. |
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9 |
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10235 |
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article; biomass; climate change; controlled study; diagnostic test accuracy study; driver; human; joint; mortality rate; precipitation; prediction; sensitivity analysis; simulation; statistics; tree growth; tropical rain forest; water stress |
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Increasing evidence shows that the functioning of the tropical forest biome is intimately related to the climate variability with some variables such as annual precipitation, temperature or seasonal water stress identified as key drivers of ecosystem dynamics. How tropical tree communities will respond to the future climate change is hard to predict primarily because several demographic processes act together to shape the forest ecosystem general behavior. To overcome this limitation, we used a joint individual-based model to simulate, over the next century, a tropical forest community experiencing the climate change expected in the Guiana Shield. The model is climate dependent: temperature, precipitation and water stress are used as predictors of the joint growth and mortality rates. We ran simulations for the next century using predictions of the IPCC 5AR, building three different climate scenarios (optimistic RCP2.6, intermediate, pessimistic RCP8.5) and a control (current climate). The basal area, above-ground fresh biomass, quadratic diameter, tree growth and mortality rates were then computed as summary statistics to characterize the resulting forest ecosystem. Whatever the scenario, all ecosystem process and structure variables exhibited decreasing values as compared to the control. A sensitivity analysis identified the temperature as the strongest climate driver of this behavior, highlighting a possible temperature-driven drop of 40% in average forest growth. This conclusion is alarming, as temperature rises have been consensually predicted by all climate scenarios of the IPCC 5AR. Our study highlights the potential slow-down danger that tropical forests will face in the Guiana Shield during the next century. © 2019, The Author(s). |
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Institut National Polytechnique Félix Houphouët-Boigny (INP-HB), Yamoussoukro, Cote d'Ivoire |
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Nature Publishing Group |
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20452322 (Issn) |
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EcoFoG @ webmaster @ |
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878 |
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Vleminckx, J.; Schimann, H.; Decaëns, T.; Fichaux, M.; Vedel, V.; Jaouen, G.; Roy, M.; Lapied, E.; Engel, J.; Dourdain, A.; Petronelli, P.; Orivel, J.; Baraloto, C. |
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Coordinated community structure among trees, fungi and invertebrate groups in Amazonian rainforests |
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Journal Article |
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2019 |
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Scientific Reports |
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Sci. Rep. |
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9 |
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11337 |
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Little is known regarding how trophic interactions shape community assembly in tropical forests. Here we assess multi-taxonomic community assembly rules using a rare standardized coordinated inventory comprising exhaustive surveys of five highly-diverse taxonomic groups exerting key ecological functions: trees, fungi, earthworms, ants and spiders. We sampled 36 1.9-ha plots from four remote locations in French Guiana including precise soil measurements, and we tested whether species turnover was coordinated among groups across geographic and edaphic gradients. All species group pairs exhibited significant compositional associations that were independent from soil conditions. For some of the pairs, associations were also partly explained by soil properties, especially soil phosphorus availability. Our study provides evidence for coordinated turnover among taxonomic groups beyond simple relationships with environmental factors, thereby refining our understanding regarding the nature of interactions occurring among these ecologically important groups. © 2019, The Author(s). |
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CIRAD, UMR Ecologie des Forêts de Guyane, Campus agronomique, BP 316, Kourou Cedex, 97379, France |
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Nature Publishing Group |
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20452322 (Issn) |
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EcoFoG @ webmaster @ |
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879 |
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Soong, J.L.; Janssens, I.A.; Grau, O.; Margalef, O.; Stahl, C.; Van Langenhove, L.; Urbina, I.; Chave, J.; Dourdain, A.; Ferry, B.; Freycon, V.; Herault, B.; Sardans, J.; Peñuelas, J.; Verbruggen, E. |
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Soil properties explain tree growth and mortality, but not biomass, across phosphorus-depleted tropical forests |
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Journal Article |
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2020 |
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Scientific reports |
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Sci Rep |
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10 |
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2302 |
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We observed strong positive relationships between soil properties and forest dynamics of growth and mortality across twelve primary lowland tropical forests in a phosphorus-poor region of the Guiana Shield. Average tree growth (diameter at breast height) increased from 0.81 to 2.1 mm yr-1 along a soil texture gradient from 0 to 67% clay, and increasing metal-oxide content. Soil organic carbon stocks in the top 30 cm ranged from 30 to 118 tons C ha-1, phosphorus content ranged from 7 to 600 mg kg-1 soil, and the relative abundance of arbuscular mycorrhizal fungi ranged from 0 to 50%, all positively correlating with soil clay, and iron and aluminum oxide and hydroxide content. In contrast, already low extractable phosphorus (Bray P) content decreased from 4.4 to <0.02 mg kg-1 in soil with increasing clay content. A greater prevalence of arbuscular mycorrhizal fungi in more clayey forests that had higher tree growth and mortality, but not biomass, indicates that despite the greater investment in nutrient uptake required, soils with higher clay content may actually serve to sustain high tree growth in tropical forests by avoiding phosphorus losses from the ecosystem. Our study demonstrates how variation in soil properties that retain carbon and nutrients can help to explain variation in tropical forest growth and mortality, but not biomass, by requiring niche specialization and contributing to biogeochemical diversification across this region. |
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Institut National Polytechnique Félix Houphouët-Boigny, Ivory CoastYamoussoukro, Cote d'Ivoire |
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NLM (Medline) |
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20452322 (Issn) |
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EcoFoG @ webmaster @ |
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916 |
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Ramalho, M.O.; Duplais, C.; Orivel, J.; Dejean, A.; Gibson, J.C.; Suarez, A.V.; Moreau, C.S. |
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Development but not diet alters microbial communities in the Neotropical arboreal trap jaw ant Daceton armigerum: an exploratory study |
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2020 |
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Scientific Reports |
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10 |
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1 |
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7350 |
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To better understand the evolutionary significance of symbiotic interactions in nature, microbiome studies can help to identify the ecological factors that may shape host-associated microbial communities. In this study we explored both 16S and 18S rRNA microbial communities of D. armigerum from both wild caught individuals collected in the Amazon and individuals kept in the laboratory and fed on controlled diets. We also investigated the role of colony, sample type, development and caste on structuring microbial communities. Our bacterial results (16S rRNA) reveal that (1) there are colony level differences between bacterial communities; (2) castes do not structure communities; (3) immature stages (brood) have different bacterial communities than adults; and 4) individuals kept in the laboratory with a restricted diet showed no differences in their bacterial communities from their wild caught nest mates, which could indicate the presence of a stable and persistent resident bacterial community in this host species. The same categories were also tested for microbial eukaryote communities (18S rRNA), and (5) developmental stage has an influence on the diversity recovered; (6) the diversity of taxa recovered has shown this can be an important tool to understand additional aspects of host biology and species interactions. |
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EcoFoG @ webmaster @ Ramalho2020 |
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929 |
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Gargallo-Garriga, A.; Sardans, J.; Granda, V.; Llusià, J.; Peguero, G.; Asensio, D.; Ogaya, R.; Urbina, I.; Van Langenhove, L.; Verryckt, L.T.; Chave, J.; Courtois, E.A.; Stahl, C.; Grau, O.; Klem, K.; Urban, O.; Janssens, I.A.; Peñuelas, J. |
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Different “metabolomic niches” of the highly diverse tree species of the French Guiana rainforests |
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Journal Article |
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2020 |
Publication |
Scientific Reports |
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Sci. Rep. |
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10 |
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6937 |
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article; ecological niche; French Guiana; metabolome; plant leaf; rainy season; reproduction; stress; tropical rain forest |
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Tropical rainforests harbor a particularly high plant diversity. We hypothesize that potential causes underlying this high diversity should be linked to distinct overall functionality (defense and growth allocation, anti-stress mechanisms, reproduction) among the different sympatric taxa. In this study we tested the hypothesis of the existence of a metabolomic niche related to a species-specific differential use and allocation of metabolites. We tested this hypothesis by comparing leaf metabolomic profiles of 54 species in two rainforests of French Guiana. Species identity explained most of the variation in the metabolome, with a species-specific metabolomic profile across dry and wet seasons. In addition to this “homeostatic” species-specific metabolomic profile significantly linked to phylogenetic distances, also part of the variance (flexibility) of the metabolomic profile was explained by season within a single species. Our results support the hypothesis of the high diversity in tropical forest being related to a species-specific metabolomic niche and highlight ecometabolomics as a tool to identify this species functional diversity related and consistent with the ecological niche theory. © 2020, The Author(s). |
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INRA, UMR EcoFoG, CNRS, Cirad, AgroParisTech, Université des Antilles, Université de Guyane, Kourou, 97310, France |
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Nature Research |
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EcoFoG @ webmaster @ |
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ter Steege, H.; Prado, P.I.; Lima, R.A.F.; Pos, E.; de Souza Coelho, L.; de Andrade Lima Filho, D.; Salomão, R.P.; Amaral, I.L.; de Almeida Matos, F.D.; Castilho, C.V.; Phillips, O.L.; Guevara, J.E.; de Jesus Veiga Carim, M.; Cárdenas López, D.; Magnusson, W.E.; Wittmann, F.; Martins, M.P.; Sabatier, D.; Irume, M.V.; da Silva Guimarães, J.R.; Molino, J.-F.; Bánki, O.S.; Piedade, M.T.F.; Pitman, N.C.A.; Ramos, J.F.; Monteagudo Mendoza, A.; Venticinque, E.M.; Luize, B.G.; Núñez Vargas, P.; Silva, T.S.F.; de Leão Novo, E.M.M.; Reis, N.F.C.; Terborgh, J.; Manzatto, A.G.; Casula, K.R.; Honorio Coronado, E.N.; Montero, J.C.; Duque, A.; Costa, F.R.C.; Castaño Arboleda, N.; Schöngart, J.; Zartman, C.E.; Killeen, T.J.; Marimon, B.S.; Marimon-Junior, B.H.; Vasquez, R.; Mostacedo, B.; Demarchi, L.O.; Feldpausch, T.R.; Engel, J.; Petronelli, P.; Baraloto, C.; Assis, R.L.; Castellanos, H.; Simon, M.F.; de Medeiros, M.B.; Quaresma, A.; Laurance, S.G.W.; Rincón, L.M.; Andrade, A.; Sousa, T.R.; Camargo, J.L.; Schietti, J.; Laurance, W.F.; de Queiroz, H.L.; Nascimento, H.E.M.; Lopes, M.A.; de Sousa Farias, E.; Magalhães, J.L.L.; Brienen, R.; Aymard C, G.A.; Revilla, J.D.C.; Vieira, I.C.G.; Cintra, B.B.L.; Stevenson, P.R.; Feitosa, Y.O.; Duivenvoorden, J.F.; Mogollón, H.F.; Araujo-Murakami, A.; Ferreira, L.V.; Lozada, J.R.; Comiskey, J.A.; de Toledo, J.J.; Damasco, G.; Dávila, N.; Lopes, A.; García-Villacorta, R.; Draper, F.; Vicentini, A.; Cornejo Valverde, F.; Lloyd, J.; Gomes, V.H.F.; Neill, D.; Alonso, A.; Dallmeier, F.; de Souza, F.C.; Gribel, R.; Arroyo, L.; Carvalho, F.A.; de Aguiar, D.P.P.; do Amaral, D.D.; Pansonato, M.P.; Feeley, K.J.; Berenguer, E.; Fine, P.V.A.; Guedes, M.C.; Barlow, J.; Ferreira, J.; Villa, B.; Peñuela Mora, M.C.; Jimenez, E.M.; Licona, J.C.; Cerón, C.; Thomas, R.; Maas, P.; Silveira, M.; Henkel, T.W.; Stropp, J.; Paredes, M.R.; Dexter, K.G.; Daly, D.; Baker, T.R.; Huamantupa-Chuquimaco, I.; Milliken, W.; Pennington, T.; Tello, J.S.; Pena, J.L.M.; Peres, C.A.; Klitgaard, B.; Fuentes, A.; Silman, M.R.; Di Fiore, A.; von Hildebrand, P.; Chave, J.; van Andel, T.R.; Hilário, R.R.; Phillips, J.F.; Rivas-Torres, G.; Noronha, J.C.; Prieto, A.; Gonzales, T.; de Sá Carpanedo, R.; Gonzales, G.P.G.; Gómez, R.Z.; de Jesus Rodrigues, D.; Zent, E.L.; Ruschel, A.R.; Vos, V.A.; Fonty, É.; Junqueira, A.B.; Doza, H.P.D.; Hoffman, B.; Zent, S.; Barbosa, E.M.; Malhi, Y.; de Matos Bonates, L.C.; de Andrade Miranda, I.P.; Silva, N.; Barbosa, F.R.; Vela, C.I.A.; Pinto, L.F.M.; Rudas, A.; Albuquerque, B.W.; Umaña, M.N.; Carrero Márquez, Y.A.; van der Heijden, G.; Young, K.R.; Tirado, M.; Correa, D.F.; Sierra, R.; Costa, J.B.P.; Rocha, M.; Vilanova Torre, E.; Wang, O.; Oliveira, A.A.; Kalamandeen, M.; Vriesendorp, C.; Ramirez-Angulo, H.; Holmgren, M.; Nascimento, M.T.; Galbraith, D.; Flores, B.M.; Scudeller, V.V.; Cano, A.; Ahuite Reategui, M.A.; Mesones, I.; Baider, C.; Mendoza, C.; Zagt, R.; Urrego Giraldo, L.E.; Ferreira, C.; Villarroel, D.; Linares-Palomino, R.; Farfan-Rios, W.; Farfan-Rios, W.; Casas, L.F.; Cárdenas, S.; Balslev, H.; Torres-Lezama, A.; Alexiades, M.N.; Garcia-Cabrera, K.; Valenzuela Gamarra, L.; Valderrama Sandoval, E.H.; Ramirez Arevalo, F.; Hernandez, L.; Sampaio, A.F.; Pansini, S.; Palacios Cuenca, W.; de Oliveira, E.A.; Pauletto, D.; Levesley, A.; Melgaço, K.; Pickavance, G. |
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Title |
Biased-corrected richness estimates for the Amazonian tree flora |
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Journal Article |
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Year |
2020 |
Publication |
Scientific Reports |
Abbreviated Journal |
Sci. Rep. |
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Volume |
10 |
Issue |
10130 |
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Keywords |
adult; article; averaging; flora; forest; population abundance |
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Abstract |
Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia is best approximated by a logseries with aggregated individuals, where aggregation increases with rarity. By averaging several methods to estimate total richness, we confirm that over 15,000 tree species are expected to occur in Amazonia. We also show that using ten times the number of plots would result in an increase to just ~50% of those 15,000 estimated species. To get a more complete sample of all tree species, rigorous field campaigns may be needed but the number of trees in Amazonia will remain an estimate for years to come. © 2020, The Author(s). |
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Instituto de Biodiversidade e Floresta, Universidade Federal do Oeste do Pará, Rua Vera Paz, Campus Tapajós, Santarém, PA 68015-110, Brazil |
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Nature Research |
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20452322 (Issn) |
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EcoFoG @ webmaster @ |
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946 |
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Author |
Jaouen, G.; Sagne, A.; Buyck, B.; Decock, C.; Louisanna, E.; Manzi, S.; Baraloto, C.; Roy, M.; Schimann, H. |
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Title |
Fungi of French Guiana gathered in a taxonomic, environmental and molecular dataset |
Type |
Journal Article |
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Year |
2019 |
Publication |
Scientific data |
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6 |
Issue |
206 |
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Abstract |
In Amazonia, the knowledge about Fungi remains patchy and biased towards accessible sites. This is particularly the case in French Guiana where the existing collections have been confined to few coastal localities. Here, we aimed at filling the gaps of knowledge in undersampled areas of this region, particularly focusing on the Basidiomycota. From 2011, we comprehensively collected fruiting-bodies with a stratified and reproducible sampling scheme in 126 plots. Sites of sampling reflected the main forest habitats of French Guiana in terms of soil fertility and topography. The dataset of 5219 specimens gathers 245 genera belonging to 75 families, 642 specimens are barcoded. The dataset is not a checklist as only 27% of the specimens are identified at the species level but 96% are identified at the genus level. We found an extraordinary diversity distributed across forest habitats. The dataset is an unprecedented and original collection of Basidiomycota for the region, making specimens available for taxonomists and ecologists. The database is publicly available in the GBIF repository ( https://doi.org/10.15468/ymvlrp ). |
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Department of Biological Science, Florida International University, FL, Miami, 33199, United States |
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Export Date: 28 October 2019 |
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891 |
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