Records |
Author |
Flores, O.; Rossi, V.; Mortier, F. |
Title |
Autocorrelation offsets zero-inflation in models of tropical saplings density |
Type |
Journal Article |
Year |
2009 |
Publication |
Ecological Modelling |
Abbreviated Journal |
Ecol. Model. |
Volume |
220 |
Issue |
15 |
Pages |
1797-1809 |
Keywords |
Hierarchical Bayesian Modelling; Conditional Auto-Regressive model; Variable selection; Zero-Inflated Poisson; Posterior predictive; Paracou; French Guiana |
Abstract |
Modelling the local density of tropical saplings can provide insights into the ecological processes that drive species regeneration and thereby help predict population recovery after disturbance. Yet, few studies have addressed the challenging issues in autocorrelation and zero-inflation of local density. This paper presents Hierarchical Bayesian Modelling (HBM) of sapling density that includes these two features. Special attention is devoted to variable selection, model estimation and comparison. We developed a Zero-Inflated Poisson (ZIP) model with a latent correlated spatial structure and compared it with non-spatial ZIP and Poisson models that were either autocorrelated (Spatial Generalized Linear Mixed, SGLM) or not (generalized linear models, GLM). In our spatial models, local density autocorrelation was modeled by a Conditional Auto-Regressive (CAR) process. 13 explicative variables described ecological conditions with respect to topography, disturbance, stand structure and intraspecific processes. Models were applied to six tropical tree species with differing biological attributes: Oxandra asbeckii, Eperua falcata, Eperua grandiflora, Dicorynia guianensis, Qualea rosea, and Tachigali melinonii. We built species-specific models using a simple method of variable selection based on a latent binary indicator. Our spatial models showed a close correlation between observed and estimated densities with site spatial structure being correctly reproduced. By contrast, the non-spatial models showed poor fits. Variable selection highlighted species-specific requirements and susceptibility to local conditions. Model comparison overall showed that the SGLM was the most accurate explanatory and predictive model. Surprisingly, zero-inflated models performed less well. Although the SZIP model was relevant with respect to data distribution, and more flexible with respect to response curves, its model complexity caused marked variability in parameter estimates. In the SUM, the spatial process alone accounted for zero-inflation in the data. A refinement of the hypotheses employed at the process level could compensate for distribution flaws at the data level. This study emphasized the importance of the HBM framework in improving the modelling of density-environment relationships. (C) 2008 Elsevier B.V. All rights reserved. |
Address |
[Flores, O.] CNRS, Ctr Ecol Fonct & Evolut, UMR 5175, F-34293 Montpellier 5, France, Email: olivierflores@free.fr |
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Publisher |
ELSEVIER SCIENCE BV |
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Edition |
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ISSN |
0304-3800 |
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Notes |
ISI:000267585400007 |
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no |
Call Number |
EcoFoG @ eric.marcon @ |
Serial |
201 |
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Author |
Delabie, J.H.C.; Cereghino, R.; Groc, S.; Dejean, A.; Gibernau, M.; Corbara, B.; Dejean, A. |
Title |
Ants as biological indicators of Wayana Amerindian land use in French Guiana |
Type |
Journal Article |
Year |
2009 |
Publication |
Comptes Rendus Biologies |
Abbreviated Journal |
C. R. Biol. |
Volume |
332 |
Issue |
7 |
Pages |
673-684 |
Keywords |
Landscape ecology; Traditional land use; Formicidae; Rapid assessment; Pit-fall traps; Self-Organizing Maps |
Abstract |
We examined the ecological impact of traditional land use by Wayana Amerindians in French Guiana using ants as bio-indicators. Ants were sampled through a rapid assessment method and the core results analyzed using Kohonen's self-organizing maps (SOM). Our sample sites included: (1) a Wayana village; (2) a cassava plantation; (3) an abandoned cassava plantation; (4) a forest fragment near the village; (5) a riparian forest; and (6) a primary terra firma forest. The ant diversity decreases according to the decree to which the habitat is disturbed. The SOM allowed us to compare the ecological succession between the six habitats. The protocol used is robust since the same conclusions were drawn using partial data. To cite this article: J.H.C Delabie et al., C R. Biologies 332 (2009). (C) 2009 Academie des sciences. Published by Elsevier Masson SAS. All rights reserved. |
Address |
[Groc, Sarah; Dejean, Andrea; Dejean, Alain] CNRS, UMR 8172, F-97379 Kourou, France, Email: alain.dejean@wanadoo.fr |
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ELSEVIER FRANCE-EDITIONS SCIENTIFIQUES MEDICALES ELSEVIER |
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ISSN |
1631-0691 |
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Notes |
ISI:000267243700009 |
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no |
Call Number |
EcoFoG @ eric.marcon @ |
Serial |
109 |
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Author |
Herault, B.; Thoen, D. |
Title |
How habitat area, local and regional factors shape plant assemblages in isolated closed depressions |
Type |
Journal Article |
Year |
2009 |
Publication |
Acta Oecologica-International Journal of Ecology |
Abbreviated Journal |
Acta Oecol.-Int. J. Ecol. |
Volume |
35 |
Issue |
3 |
Pages |
385-392 |
Keywords |
Closed depressions; Colonization; Connectivity; Fragmented habitats; Emergent Groups; Open and forested landscape; Life-history traits |
Abstract |
Classifying species by shared life-history traits is important if common ecological response groups are to be identified among different species. We investigated how habitat area, local and regional factors shape plant communities in small isolated closed depressions, and how the species richness is related to the interplay between environmental factors and specific life-history trait combinations. In Central-Western Europe, 169 closed depressions were completely Surveyed for plant presence in two highly contrasted landscapes (forested and open landscapes). All species were clustered into 9 Emergent Groups based oil 10 life-history traits related to plant dispersal, establishment and persistence. Habitat areas were related to species presence using logistic regressions. Most Emergent Groups were more area-dependent in open than in forested landscapes, owing to heterogeneous light levels in forest weakening the species-area relationship. In open landscapes, Floating Hydrophytes were severely underrepresented in very small depressions, owing to the absence of waterfowl poulation. Local environmental and regional factors were related to species richness using Generalized Linear Models. In open landscapes, local environmental factors such as water conductivity or soil productivity are respectively the main predictors. In forested landscapes, the abundance of most Emergent Groups Was better predicted by regional factors, i.e., habitat connectivity and distance to the forest edge. Forested landscapes strongly impeded the closed depressions' colonization by the less mobile Emergent Groups Such as Large-seeded Perennials. (C) 2009 Elsevier Masson SAS. All rights reserved. |
Address |
[Herault, Bruno] Univ Antilles Guyane, UMR EcoFoG, F-97387 Kourou, France, Email: bruno.herault@ecofog.gf |
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GAUTHIER-VILLARS/EDITIONS ELSEVIER |
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Edition |
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ISSN |
1146-609X |
ISBN |
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Notes |
ISI:000266174400006 |
Approved |
no |
Call Number |
EcoFoG @ eric.marcon @ |
Serial |
112 |
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Author |
Gond, V.; Guitet, S. |
Title |
Remote Sensing in Post-Logging Diagnoses for Forest Management in French Guiana |
Type |
Journal Article |
Year |
2009 |
Publication |
Bois et Forets des Tropiques |
Abbreviated Journal |
Bois For. Trop. |
Volume |
63 |
Issue |
299 |
Pages |
5-13 |
Keywords |
selective logging; logging impact inspections; French Guiana; remote sensing; forest management |
Abstract |
This study is part of the activities carried out to monitor tow-impact logging operations in humid tropical forests. The sustainability of these activities is highly dependent on the scale of logging damage, and managers therefore need to carry out effective checks on the quality of forestry work. In this study, remote sensing was used to track the extension of logging operations and to assess damage, through images acquired during and after logging in each parcel. Analysis of the high-resolution images (10 m) clearly identifies logged-over clearings and some skidding tracks, allowing assessments of gaps opening up in the canopy. Several parcels were monitored in this French Guiana study. A simple diagnostic procedure was established for each parcel to assess logging intensity and identify new logging tracks and timber losses. The remote sensing toot thus helps to make more accurate assessments of logging quality and to draw relevant conclusions for the logging company. The study has demonstrated the usefulness of remote sensing to identify damage after logging. The quality of restitution of the damage was validated by means of a database on the logging terrain and through field missions. This post-logging inspection tool can now be automated for fully operational use by forest managers. |
Address |
[Gond, Valery] Univ Laval, Fac Foresterie, Umr Ecofog Guyane francaise, Cirad,UR 36, Quebec City, PQ G1V OA6, Canada |
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Thesis |
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Publisher |
CIRAD-CENTRE COOPERATION INT RECHERCHE AGRONOMIQUE POUR |
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Edition |
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ISSN |
0006-579X |
ISBN |
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Medium |
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Area |
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Expedition |
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Notes |
ISI:000266156700001 |
Approved |
no |
Call Number |
EcoFoG @ webmaster @ |
Serial |
280 |
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Author |
Brechet, L.; Ponton, S.; Roy, J.; Freycon, V.; Couteaux, M.M.; Bonal, D.; Epron, D. |
Title |
Do tree species characteristics influence soil respiration in tropical forests? A test based on 16 tree species planted in monospecific plots |
Type |
Journal Article |
Year |
2009 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
Volume |
319 |
Issue |
1-2 |
Pages |
235-246 |
Keywords |
Fine root; Litter quality; Nutrient cycling; Plant soil interactions; Soil respiration; Tropical plantations |
Abstract |
The high spatial variability of soil respiration in tropical rainforests is well evaluated, but influences of biotic factors are not clearly understood. This study underlines the influence of tree species characteristics on soil respiration across a 16-monospecific plot design in a tropical plantation of French Guiana. A large variability of soil CO2 fluxes was observed among plots (i.e. 2.8 to 6.8 μmol m(-2) s(-1)) with the ranking being constant across seasons. There were no significant relationships between soil respiration and soil moisture or soil temperature, neither spatially, nor seasonally. The variability of soil respiration was mainly explained by quantitative factors such as leaf litterfall and basal area. Surprisingly, no significant relationship was observed between soil respiration and root biomass. However, the influence of substrate quality was revealed by a strong relationship between soil respiration and litterfall P (and litterfall N, to a lesser extent). |
Address |
[Ponton, Stephane] Natl Inst Agr Res INRA Ctr Rech Nancy, Forest Ecol & Ecophysiol Unit, UMR EEF, F-54280 Seichamps, France, Email: ponton@nancy.inra.fr |
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SPRINGER |
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Series Issue |
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Edition |
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ISSN |
0032-079X |
ISBN |
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Medium |
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Area |
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Conference |
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Notes |
ISI:000266143400020 |
Approved |
no |
Call Number |
EcoFoG @ eric.marcon @ |
Serial |
110 |
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Author |
Prevost-Boure, N.C.; Ngao, J.; Berveiller, D.; Bonal, D.; Damesin, C.; Dufrene, E.; Lata, J.C.; Le Dantec, V.; Longdoz, B.; Ponton, S.; Soudani, K.; Epron, D. |
Title |
Root exclusion through trenching does not affect the isotopic composition of soil CO2 efflux |
Type |
Journal Article |
Year |
2009 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
Volume |
319 |
Issue |
1-2 |
Pages |
1-13 |
Keywords |
Stable carbon isotopes; Natural abundance; Soil respiration; Trenched plot; Rainforest; Temperate forest |
Abstract |
Disentangling the autotrophic and heterotrophic components of soil CO2 efflux is critical to understanding the role of soil system in terrestrial carbon (C) cycling. In this study, we combined a stable C-isotope natural abundance approach with the trenched plot method to determine if root exclusion significantly affected the isotopic composition (delta C-13) of soil CO2 efflux (R-S). This study was performed in different forest ecosystems: a tropical rainforest and two temperate broadleaved forests, where trenched plots had previously been installed. At each site, R-S and its delta C-13 (delta C-13(Rs)) tended to be lower in trenched plots than in control plots. Contrary to R-S, delta C-13(Rs) differences were not significant. This observation is consistent with the small differences in delta C-13 measured on organic matter from root, litter and soil. The lack of an effect on delta C-13(Rs) by root exclusion could be from the small difference in delta C-13 between autotrophic and heterotrophic soil respirations, but further investigations are needed because of potential artefacts associated with the root exclusion technique. |
Address |
[Prevost-Boure, Nicolas Chemidlin; Berveiller, Daniel; Damesin, Claire; Dufrene, Eric; Lata, Jean-Christophe; Soudani, Kamel] Univ Paris Sud, Lab Ecol Systemat & Evolut, AgroParisTech, CNRS,UMR 8079, F-75231 Paris, France, Email: nicolas.chemidlin-prevost-boure@u-psud.fr |
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SPRINGER |
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ISSN |
0032-079X |
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Notes |
ISI:000266143400001 |
Approved |
no |
Call Number |
EcoFoG @ eric.marcon @ |
Serial |
203 |
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Author |
Strasburg, J.L.; Scotti-Saintagne, C.; Scotti, I.; Lai, Z.; Rieseberg, L.H. |
Title |
Genomic Patterns of Adaptive Divergence between Chromosomally Differentiated Sunflower Species |
Type |
Journal Article |
Year |
2009 |
Publication |
Molecular Biology and Evolution |
Abbreviated Journal |
Mol. Biol. Evol. |
Volume |
26 |
Issue |
6 |
Pages |
1341-1355 |
Keywords |
species boundaries; chromosomal rearrangements; positive selection; hybridization; sunflowers; Helianthus |
Abstract |
Understanding the genetic mechanisms of speciation and basis of species differences is among the most important challenges in evolutionary biology. Two questions of particular interest are what roles divergent selection and chromosomal differentiation play in these processes. A number of recently proposed theories argue that chromosomal rearrangements can facilitate the development and maintenance of reproductive isolation and species differences by suppressing recombination within rearranged regions. Reduced recombination permits the accumulation of alleles contributing to isolation and adaptive differentiation and protects existing differences from the homogenizing effects of introgression between incipient species. Here, we examine patterns of genetic diversity and divergence in rearranged versus collinear regions in two widespread, extensively hybridizing sunflower species, Helianthus annuus and Helianthus petiolaris, using sequence data from 77 loci distributed throughout the genomes of the two species. We find weak evidence for increased genetic divergence near chromosomal break points but not within rearranged regions overall. We find no evidence for increased rates of adaptive divergence on rearranged chromosomes; in fact, collinear chromosomes show a far greater excess of fixed amino acid differences between the two species. A comparison with a third sunflower species indicates that much of the nonsynonymous divergence between H. annuus and H. petiolaris probably occurred during or soon after their formation. Our results suggest a limited role for chromosomal rearrangements in genetic divergence, but they do document substantial adaptive divergence and provide further evidence of how species integrity and genetic identity can be maintained at many loci in the face of extensive hybridization and gene flow. |
Address |
[Strasburg, Jared L.; Scotti-Saintagne, Caroline; Rieseberg, Loren H.] Indiana Univ, Dept Biol, Bloomington, IN 47405 USA, Email: jstrasbu@indiana.edu |
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Publisher |
OXFORD UNIV PRESS |
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Edition |
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ISSN |
0737-4038 |
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Notes |
ISI:000266116500012 |
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no |
Call Number |
EcoFoG @ eric.marcon @ |
Serial |
111 |
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Author |
Corbara, B.; Carpenter, J.M.; Cereghino, R.; Leponce, M.; Gibernau, M.; Dejean, A. |
Title |
Diversity and nest site selection of social wasps along Guianese forest edges: assessing the influence of arboreal ants |
Type |
Journal Article |
Year |
2009 |
Publication |
Comptes Rendus Biologies |
Abbreviated Journal |
C. R. Biol. |
Volume |
332 |
Issue |
5 |
Pages |
470-479 |
Keywords |
Polistinae; Diversity; Nest site selection; Ant-wasp-plant interactions; French Guiana |
Abstract |
monitored), and estimate that we recorded up to 73% of the local social wasp fauna. This baseline study was complemented by a long-term survey of the same area and the examination of isolated trees (permitting us to record two additional species, resulting in a total of 63 wasp species). Our results form a continuum from species avoiding nesting on any plant (6.5% of the wasp species) to species nesting on plants but avoiding those sheltering ant nests (82%), to, finally, wasps nesting in association with arboreal ants known to divert army ant raids (11.5%). Consequently, this study documents that most wasp species select plants possibly repulsive to arboreal ants, while associations with arboreal ants, although confirmed here, have been overrepresented in the literature. To cite this article: B. Corbara et al., C. R. Biologies 332 (2009). (C) 2009 Academie des sciences. Published by Elsevier Masson SAS. All rights reserved. |
Address |
[Dejean, Alain] CNRS Guyane, UPS 2561, F-97300 Cayenne, France, Email: bruno.corbara@univ-bpclermont.fr |
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ELSEVIER FRANCE-EDITIONS SCIENTIFIQUES MEDICALES ELSEVIER |
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1631-0691 |
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ISI:000266021400007 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
113 |
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Author |
Patino, S.; Lloyd, J.; Paiva, R.; Baker, T.R.; Quesada, C.A.; Mercado, L.M.; Schmerler, J.; Schwarz, M.; Santos, A.J.B.; Aguilar, A.; Czimczik, C.I.; Gallo, J.; Horna, V.; Hoyos, E.J.; Jimenez, E.M.; Palomino, W.; Peacock, J.; Pena-Cruz, A.; Sarmiento, C.; Sota, A.; Turriago, J.D.; Villanueva, B.; Vitzthum, P.; Alvarez, E.; Arroyo, L.; Baraloto, C.; Bonal, D.; Chave, J.; Costa, A.C.L.; Herrera, R.; Higuchi, N.; Killeen, T.; Leal, E.; Luizao, F.; Meir, P.; Monteagudo, A.; Neil, D.; Nunez-Vargas, P.; Penuela, M.C.; Pitman, N.; Priante, N.; Prieto, A.; Panfil, S.N.; Rudas, A.; Salomao, R.; Silva, N.; Silveira, M.; deAlmeida, S.S.; Torres-Lezama, A.; Vasquez-Martinez, R.; Vieira, I.; Malhi, Y.; Phillips, O.L. |
Title |
Branch xylem density variations across the Amazon Basin |
Type |
Journal Article |
Year |
2009 |
Publication |
Biogeosciences |
Abbreviated Journal |
Biogeosciences |
Volume |
6 |
Issue |
4 |
Pages |
545-568 |
Keywords |
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Abstract |
Xylem density is a physical property of wood that varies between individuals, species and environments. It reflects the physiological strategies of trees that lead to growth, survival and reproduction. Measurements of branch xylem density, rho(x), were made for 1653 trees representing 598 species, sampled from 87 sites across the Amazon basin. Measured values ranged from 218 kg m(-3) for a Cordia sagotii (Boraginaceae) from Mountagne de Tortue, French Guiana to 1130 kg m(-3) for an Aiouea sp. (Lauraceae) from Caxiuana, Central Para, Brazil. Analysis of variance showed significant differences in average rho(x) across regions and sampled plots as well as significant differences between families, genera and species. A partitioning of the total variance in the dataset showed that species identity (family, genera and species) accounted for 33% with environment (geographic location and plot) accounting for an additional 26%; the remaining “residual” variance accounted for 41% of the total variance. Variations in plot means, were, however, not only accountable by differences in species composition because xylem density of the most widely distributed species in our dataset varied systematically from plot to plot. Thus, as well as having a genetic component, branch xylem density is a plastic trait that, for any given species, varies according to where the tree is growing in a predictable manner. Within the analysed taxa, exceptions to this general rule seem to be pioneer species belonging for example to the Urticaceae whose branch xylem density is more constrained than most species sampled in this study. These patterns of variation of branch xylem density across Amazonia suggest a large functional diversity amongst Amazonian trees which is not well understood. |
Address |
[Patino, S.; Aguilar, A.; Jimenez, E. M.; Vitzthum, P.; Penuela, M. C.] Univ Nacl Colombia, Inst Amazonico Invest Imani, Grp Ecol Ecosistemas Terrestres Trop, Leticia, Amazonas, Colombia, Email: sanpatiga@gmail.com |
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COPERNICUS PUBLICATIONS |
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ISSN |
1726-4170 |
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Notes |
ISI:000265743200004 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
115 |
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Author |
Grangier, J.; Dejean, A.; Male, P.J.G.; Solano, P.J.; Orivel, J. |
Title |
Mechanisms driving the specificity of a myrmecophyte-ant association |
Type |
Journal Article |
Year |
2009 |
Publication |
Biological Journal of the Linnean Society |
Abbreviated Journal |
Biol. J. Linnean Soc. |
Volume |
97 |
Issue |
1 |
Pages |
90-97 |
Keywords |
Allomerus decemarticulatus; exclusion filters; Hirtella physophora; horizontal transmission; host recognition; mutualism |
Abstract |
In the understory of pristine Guianese forests, the myrmecophyte Hirtella physophora almost exclusively shelters colonies of the plant-ant Allomerus decemarticulatus in its leaf pouches. We experimentally tested three non-mutually exclusive hypotheses concerning phenomena that can determine the species specificity of this association throughout the foundation stage of the colonies: (1) interspecific competition results in the overwhelming presence of A. decemarticulatus queens or incipient colonies; (2) exclusion filters prevent other ant species from entering the leaf pouches; and (3) host-recognition influences the choice of founding queens, especially A. decemarticulatus. Neither interspecific competition, nor the purported exclusion filters that we examined play a major role in maintaining the specificity of this association. Unexpectedly, the plant trichomes lining the domatia appear to serve as construction material during claustral foundation rather than as a filter. Finally, A. decemarticulatus queens are able to identify their host plant from a distance through chemical and/or visual cues, which is rarely demonstrated in studies on obligatory ant-plant associations. We discuss the possibility that this specific host-recognition ability could participate in shaping a compartmentalized plant-ant community where direct competition between ant symbionts is limited. (C) 2009 The Linnean Society of London, Biological Journal of the Linnean Society, 2009, 97, 90-97. |
Address |
[Grangier, Julien; Male, Pierre-Jean G.; Orivel, Jerome] Univ Toulouse 3, Lab Evolut & Divers Biol, CNRS, UMR 5174, F-31062 Toulouse 9, France, Email: grangier@cict.fr |
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WILEY-BLACKWELL PUBLISHING, INC |
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ISSN |
0024-4066 |
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Notes |
ISI:000265406800008 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
114 |
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