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Le Guen, V.; Rodier-Goud, M.; Troispoux, V.; Xiong, T.C.; Brottier, P.; Billot, C.; Seguin, M. |
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Title |
Characterization of polymorphic microsatellite markers for Microcyclus ulei, causal, agent of South American leaf blight of rubber trees |
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Journal Article |
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Year |
2004 |
Publication |
Molecular Ecology Notes |
Abbreviated Journal |
Mol. Ecol. Notes |
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Volume |
4 |
Issue |
1 |
Pages |
122-124 |
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Hevea brasiliensis; Microcyclus ulei; microsatellite markers; phytopathogenic fungi; South American leaf blight |
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Abstract |
South American leaf blight caused by the ascomycete Microcyclus Wei is the most harmful disease of the rubber tree in Latin America and a potential threat to Asiatic and African natural rubber production. Until now, the variability of this fungus was assessed through observation of pathogenicity of isolates on a range of rubber tree clones with known resistance reactions. The present study describes the process used to design 11 microsatellite markers and evaluates their usefulness in detecting genetic polymorphism. Nine of these markers were polymorphic among six isolates from Brazil (with two to three alleles per locus) and five markers were polymorphic among four isolates from French Guiana (with two to four alleles per locus). |
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CIRAD, F-97387 Kourou, France, Email: vincent.le_guen@cirad.fr |
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BLACKWELL PUBLISHING LTD |
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1471-8278 |
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ISI:000189159500037 |
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EcoFoG @ eric.marcon @ |
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265 |
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Salhi, L.; Nait-Rabah, O.; Deyrat, C.; Roos, C. |
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Title |
Numerical Modeling of Single Helical Pile Behavior under Compressive Loading in Sand |
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Journal Article |
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Year |
2013 |
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Electronic Journal of Geotechnical Engineering |
Abbreviated Journal |
Electron. J. Geotech. Eng. |
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Volume |
18 |
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Bundle T |
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4119-4338 |
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Keywords |
helical pile; finite element method; failure mechanisms; sand |
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The present research deals with helical piles behavior in cohesionless soil through finite element modeling. An approach of modeling of the screw-pile geometry has been proposed through the Finite Element Analysis (FEA) computer program Plaxis. The numerical results are compared with measurements from large scale test and the bearing capacity has been estimated using both cylindrical and individual bearing model. Moreover, different failure criterions have been applied to estimate the ultimate capacity. The effect of spacing ratio (S/Dh) on the screw-pile behavior has been further studied. It has found that results from the model fit the field results. Through the study of the load transfer mechanism, the transition from cylindrical shear to individual plate behavior occurs at a value of spacing ratio (1.5 to 2). |
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Laboratoire des matériaux et molécules en milieu amazonien, EcoFoG-Université des Antilles-Guyane, 97351 Cayenne, French Guiana |
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EcoFoG @ webmaster @ |
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525 |
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Niamké, F.B.; Amusant, N.; Kadio, A.A.; Thevenon, M.-F.; Nourissier, S.; Adima, A.A.; Jay-Allemand, C.; Chaix, G. |
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Title |
Rapid prediction of phenolic compounds as chemical markers for the natural durability of teak (Tectona grandis Linn f.) heartwood by near infrared spectroscopy |
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Journal Article |
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Year |
2014 |
Publication |
Journal of Near Infrared Spectroscopy |
Abbreviated Journal |
J. Near Infrared Spectrosc. |
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Volume |
22 |
Issue |
1 |
Pages |
35-43 |
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Keywords |
Heartwood; Hplc; Natural durability; NIR spectroscopy; Phenolic; Prediction; Quinone; Tectona grandis |
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Near infrared (NIR) spectroscopy provides rapid and non-destructive analysis of wood properties and composition. In this study, we aimed to use NIR measurement for the prediction of teak phenolic compounds, which are chemical markers for natural durability of wood. Twenty-seven teak trees from two geographical zones (Malaysia and Ivory Coast) were used. On ground heartwood samples, the content of total phenolics and individual quinones (tectoquinone, 2-(hydroxymethyl)anthraquinone, 2-anthraquinone carboxylic acid, 1,4-naphthoquinoneand 4c,5c-dihydroxy-epiisocatalponol) were determined using high performance liquid chromatography (HPLC). Partial least squares (PLS) regression with NIR spectra on the same samples and phenolic data was used to build NIR models for phenolic contents. The PLS models for the total predicted phenolics and three quinone contents (tectoquinone, 2-(hydroxymethyl) anthraquinone, and 4¢,5¢-dihydroxy-epiisocatalponol) showed a good ratio of performance to deviation (RPD ≥ 2.5), strong coefficients of determination (r2 ≥ 0.8) and the prediction errors were consistent with the reference method. These results demonstrate that NIR spectroscopy can be reliable for the evaluation of total phenolics and individual quinones in teak heartwood wood meal. NIR spectroscopy is a promising technique for rapidly providing information on the quinone contents in teak wood and indirectly for knowing its natural durability. This finding leads to a precise, non-destructive tool for teak wood quality evaluation. © IM Publications LLP 2014. |
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CIRAD-UMR AGAP, Department of Forest Science, ESALQ / University of São Paulo, Avenue Pàdua Dias 11, CEP 13418-900, Piracicaba-SP, Brazil |
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N I R Publications |
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17516552 (Issn) |
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Export Date: 20 May 2014; Source: Scopus; Language of Original Document: English; Correspondence Address: Niamké, F.B.; LAPISEN, Groupe de Recherche en Chimie des Eaux et des Substances Naturelles, Institut National Polytechnique Houphouët Boigny, BP 1313, Yamoussoukro, Cote d'Ivoire |
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EcoFoG @ webmaster @ |
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542 |
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Gibernau, M.; Orivel, J.; Delabie, J.H.C.; Barabe, D.; Dejean, A. |
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An asymmetrical relationship between an arboreal ponerine ant and a trash-basket epiphyte (Araceae) RID D-4390-2009 RID C-4034-2011 |
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Journal Article |
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2007 |
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Biological Journal of the Linnean Society |
Abbreviated Journal |
Biol. J. Linnean Soc. |
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91 |
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3 |
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341-346 |
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Keywords |
hanging soil; mutualism; nest site selection; plant protection |
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The relationship between ants and Philodendron insigne, a trash-basket epiphyte abundant along streams, was studied in French Guiana. Only a few (3%) of the young plants sheltered ants, whereas 90% of the mature individuals did. The most frequent associate was Odontomachus hastatus (Fabricius), an arboreal ponerine ant, and its nests were almost entirely (94.4%) located in P. insigne root clusters. Experimental choice tests conducted on O. hastatus workers confirmed their preference for P. insigne. We propose that the interactions between P. insigne and ants may be intermediate between non-obligatory, reward-based interactions and obligatory, specific ant-myrmecophyte interactions because (1) almost all mature P. insigne individuals are associated with ants; (2) O. hastatus is the most frequent when diverse ants nest in its root clusters; (3) ants colonize mature P. insigne, but rarely young individuals; (4) ants, particularly O. hastatus, protect the foliage of their host; and (5) at least one ant species, O. hastatus, prefers P. insigne over other host plants. The latter relationship is asymmetrical because P. insigne is inhabited by diverse ants whereas O. hastatus nests almost exclusively in P. insigne. (c) 2007 The Linnean Society of London, Biological Journal of the Linnean Society, 2007, 91, 341-346. |
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Univ Toulouse 3, Lab Evolut & Divers Biol, UMR 5174, CNRS,UPS, F-31062 Toulouse 9, France, Email: dejean@cict.fr |
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Blackwell Publishing |
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English |
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0024-4066 |
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WOS:000247817100001 |
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no |
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EcoFoG @ webmaster @ |
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356 |
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Meyer-Sand, B.R.V.; Blanc-Jolivet, C.; Mader, M.; Paredes-Villanueva, K.; Tysklind, N.; Sebbenn, A.M.; Guichoux, E.; Degen, B. |
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Title |
Development of a set of SNP markers for population genetics studies of Ipe (Handroanthus sp.), a valuable tree genus from Latin America |
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Journal Article |
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Year |
2018 |
Publication |
Conservation Genetics Resources |
Abbreviated Journal |
Conserv. Gen. Res. |
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10 |
Issue |
4 |
Pages |
779-781 |
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Keywords |
Handroanthus sp; MassARRAY; Single nucleotide polymorphism |
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A combination of restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing was used for the development of single nucleotide polymorphisms (SNP) and INDEL (insertion/deletions) genetic markers for Ipe (Handroanthus sp.). Of the 402 putative loci identified, 389 SNPs and INDELs (315 nuclear SPNs, six chloroplast INDELs, 15 chloroplast SNPs, 12 mitochondrial INDELs and 41 mitochondrial SNPs) were successfully genotyped at 93 individuals from Brazil, Bolivia and French Guiana using a MassARRAY® iPLEX™ platform. This set of markers will be invaluable for population genetics, phylogeography and DNA fingerprinting studies. © 2017, Springer Science+Business Media B.V., part of Springer Nature. |
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Plateforme Génome Transcriptome de Bordeaux, INRA Pierroton, Bâtiment Artiga, 69 route d’Arcachon, Cestas, 33610, France |
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Springer Netherlands |
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18777252 (Issn) |
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Export Date: 12 November 2018; Correspondence Address: Blanc-Jolivet, C.; Thünen Institute of Forest Genetics, Sieker Landstrasse 2, Germany; email: celine.blanc-jolivet@thuenen.de; References: Blanc-Jolivet, C., Kersten, B., Bourland, N., Guichoux, E., Delcamp, A., Doucet, J.-L., Degen, B., Development of nuclear SNP markers for the timber tracking of the African tree species Sapelli, Entandrophragma cylindricum (2017) Conserv Genet Resour; Blanc-Jolivet, C., Kersten, B., Daïnou, K., Hardy, O., Guichoux, E., Delcamp, A., Degen, B., Development of nuclear SNP markers for genetic tracking of Iroko, Milicia excelsa and Milicia regia (2017) Conserv Genet Resour; Braga, A.C., Reis, A.M.M., Leoi, L.T., Pereira, R.W., Collevatti, R.G., Development and characterization of microsatellite markers for the tropical tree species Tabebuia aurea (Bignoniaceae) (2007) Mol Ecol Notes, 7, pp. 53-56. , COI: 1:CAS:528:DC%2BD2sXis1Sjuro%3D; Dumolin, S., Demesure, B., Pettit, R., Inheritance of chloroplast and mitochondrial genomes in pedunculate oak investigated with an efficient PCR method (1995) Theor Appl Genet, 91, pp. 1253-1256. , COI: 1:CAS:528:DyaK28XhsFKmsLo%3D; Goudet, J., Fstat (Version 2.9.3.2.): a computer program to calculate F-statistics (2002) J Heredity, 86, pp. 485-486; Grose, S.O., Olmstead, R.G., Evolution of a charismatic neotropical clade: molecular phylogeny of Tabebuia s. L crescentieae, and allied genera (Bignoniaceae) (2007) Syst Bot, 32, pp. 650-659; Jardine, D.I., Blanc-Jolivet, C., Dixon, R.R.M., Dormontt, E.E., Dunker, B., Gerlach, J., Development of SNP markers for Ayous (Triplochiton scleroxylon K. Schum) an economically important tree species from tropical West and Central Africa (2016) Conserv Genet Resour, 8 (2), pp. 129-139; Miller, M.R., Dunham, J.P., Amores, A., Cresko, W.A., Johnson, E.A., Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers (2007) Genome Res, 17, pp. 240-248. , COI: 1:CAS:528:DC%2BD2sXhsFKis7w%3D; Pakull, B., Mader, M., Kersten, B., Ekue, M.R.M., Dipelet, U.G.B., Paulini, M., Development of nuclear, chloroplast and mitochondrial SNP markers for Khaya sp (2016) Conserv Genet Resour, 8 (3), pp. 283-297; Schulze, M., Grogan, J., Uhl, C., Lentini, M., Vidal, E., Evaluating Ipê (Tabebuia, Bignoniaceae) logging in amazonia: Sustainable management or catalyst for forest degradation? (2008) Biol Conserv, 141, pp. 2071-2085; Straub, S.C., Parks, M., Weitemier, K., fishbein, M., Cronn, R.C., Liston, A., Navigating the tip of the genomic iceberg: next-generation sequencing for plant systematics (2012) Am J Bot, 99, pp. 349-364. , COI: 1:CAS:528:DC%2BC38XksValtbo%3D |
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no |
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EcoFoG @ webmaster @ |
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832 |
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Author |
Clair, B.; Ruelle, J.; Thibaut, B. |
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Title |
Relationship between growth stress, mechanical-physical properties and proportion of fibre with gelatinous layer in chestnut (Castanea sativa Mill.) |
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Journal Article |
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Year |
2003 |
Publication |
Holzforschung |
Abbreviated Journal |
Holzforschung |
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Volume |
57 |
Issue |
2 |
Pages |
189-195 |
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Keywords |
growth stress; longitudinal Young's modulus; shrinkage; normal wood; tension wood; gelatinous layer; Castanea Sativa |
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Abstract |
A range of mechanical and physical properties were determined for 96 specimens of chestnut wood and for wood types ranging from compression to tension wood; tests included (1) growth stress, (2) longitudinal Young's modulus in green and air-dried states (3) shrinkage in longitudinal and tangential directions. Anatomical observations permitted determination of the proportion of fibres with a gelatinous layer. The influence of these atypical fibres on macroscopic wood properties is examined and discussed. A basic model is proposed to determine their properties in theoretically isolated conditions. |
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Univ Montpellier 2, Lab Mecan & Genie Civil, F-34095 Montpellier 5, France, Email: clair@lmgc.univ-montp2.fr |
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WALTER DE GRUYTER & CO |
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0018-3830 |
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ISI:000181797800011 |
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no |
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EcoFoG @ eric.marcon @ |
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274 |
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Chang, S.S.; Clair, B.; Ruelle, J.; Beauchene, J.; Di Renzo, F.; Quignard, F.; Zhao, G.J.; Yamamoto, H.; Gril, J. |
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Title |
Mesoporosity as a new parameter for understanding tension stress generation in trees |
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Journal Article |
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Year |
2009 |
Publication |
Journal of Experimental Botany |
Abbreviated Journal |
J. Exp. Bot. |
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60 |
Issue |
11 |
Pages |
3023-3030 |
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Keywords |
Growth stress; hydrogel; mesoporosity; tension wood |
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The mechanism for tree orientation in angiosperms is based on the production of high tensile stress on the upper side of the inclined axis. In many species, the stress level is strongly related to the presence of a peculiar layer, called the G-layer, in the fibre cell wall. The structure of the G-layer has recently been described as a hydrogel thanks to N-2 adsorption-desorption isotherms of supercritically dried samples showing a high mesoporosity (pores size from 2-50 nm). This led us to revisit the concept of the G-layer that had been, until now, only described from anatomical observation. Adsorption isotherms of both normal wood and tension wood have been measured on six tropical species. Measurements show that mesoporosity is high in tension wood with a typical thick G-layer while it is much less with a thinner G-layer, sometimes no more than normal wood. The mesoporosity of tension wood species without a G-layer is as low as in normal wood. Not depending on the amount of pores, the pore size distribution is always centred around 6-12 nm. These results suggest that, among species producing fibres with a G-layer, large structural differences of the G-layer exist between species. |
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[Chang, Shan-Shan; Clair, Bruno; Gril, Joseph] Univ Montpellier 2, LMGC, CNRS, F-34095 Montpellier 5, France, Email: clair@lmgc.univ-montp2.fr |
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OXFORD UNIV PRESS |
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0022-0957 |
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ISI:000268588300008 |
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EcoFoG @ eric.marcon @ |
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107 |
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Bardet, S.; Beauchene, J.; Thibaut, B. |
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Title |
Influence of basic density and temperature on mechanical properties perpendicular to grain of ten wood tropical species |
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Journal Article |
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Year |
2003 |
Publication |
Annals of Forest Science |
Abbreviated Journal |
Ann. For. Sci. |
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60 |
Issue |
1 |
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49-59 |
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Keywords |
green wood; tropical wood; transverse mechanical properties; basic density; softening temperature |
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Abstract |
The influence of temperature on transverse mechanical properties of 10 tropical species in green condition was studied in radial compression (0 to 99 degreesC), transverse shear with longitudinal-radial shearing plane and rupture of the longitudinal-tangential plane (20 to 80 degreesC). Basic density ranged from 0.21 to 0.91 g cm(-3). Load-displacement curves were characterised by initial rigidity, yield stress, yield strain and strain energy at 20% strain level. The relation between each criterion and basic density was expressed by a power law. The dependency on temperature evidenced a sharp glassy transition, except for the fracture energy only slightly influenced by temperature. An empirical model allowed evaluating a transition temperature between 51 and 69 degreesC, depending on the species and the criterion, which was attributed to lignin. Detailed analysis of the apparent modulus in radial compression suggested that complex relaxation phenomena occur around 10 degreesC and that the rubbery state is not fully reached at 80 degreesC. |
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Univ Montpellier 2, Lab Mecan & Genie Civil, Equipe Bois, F-34095 Montpellier 5, France |
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E D P SCIENCES |
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1286-4560 |
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ISI:000181322100006 |
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EcoFoG @ eric.marcon @ |
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275 |
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Touchard, A.; Aili, S.R.; Téné, N.; Barassé, V.; Klopp, C.; Dejean, A.; Kini, R.M.; Mrinalini; Coquet, L.; Jouenne, T.; Lefranc, B.; Leprince, J.; Escoubas, P.; Nicholson, G.M.; Treilhou, M.; Bonnafé, E. |
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Title |
Venom Peptide Repertoire of the European Myrmicine Ant Manica rubida: Identification of Insecticidal Toxins |
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Journal Article |
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Year |
2020 |
Publication |
Journal of proteome research |
Abbreviated Journal |
J. Proteome Res. |
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Volume |
19 |
Issue |
4 |
Pages |
1800-1811 |
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Keywords |
glycosylated toxin; peptidome; polycationic α-helix; predation; pyroglutamate; reversible neurotoxicity |
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Abstract |
Using an integrated transcriptomic and proteomic approach, we characterized the venom peptidome of the European red ant, Manica rubida. We identified 13 “myrmicitoxins” that share sequence similarities with previously identified ant venom peptides, one of them being identified as an EGF-like toxin likely resulting from a threonine residue modified by O-fucosylation. Furthermore, we conducted insecticidal assays of reversed-phase HPLC venom fractions on the blowfly Lucilia caesar, permitting us to identify six myrmicitoxins (i.e., U3-, U10-, U13-, U20-MYRTX-Mri1a, U10-MYRTX-Mri1b, and U10-MYRTX-Mri1c) with an insecticidal activity. Chemically synthesized U10-MYRTX-Mri1a, -Mri1b, -Mri1c, and U20-MYRTX-Mri1a irreversibly paralyzed blowflies at the highest doses tested (30-125 nmol·g-1). U13-MYRTX-Mri1a, the most potent neurotoxic peptide at 1 h, had reversible effects after 24 h (150 nmol·g-1). Finally, U3-MYRTX-Mri1a has no insecticidal activity, even at up to 55 nmol·g-1. Thus, M. rubida employs a paralytic venom rich in linear insecticidal peptides, which likely act by disrupting cell membranes. |
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Address |
VenomeTech, 473 Route des Dolines – Villa 3, Valbonne, 06560, France |
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NLM (Medline) |
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15353907 (Issn) |
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Export Date: 20 April 2020 |
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EcoFoG @ webmaster @ |
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927 |
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Author |
Perrot, T.; Guillaume, S.; Nadine, A.; Jacques, B.; Philippe, G.; Stéphane, D.; Rodnay, S.; Mélanie, M.-R.; Eric, G. |
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Title |
A reverse chemical ecology approach to explore wood natural durability |
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2020 |
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Microbial Biotechnology |
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Microb. Biotechnol. |
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13 |
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5 |
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1673-1677 |
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glutathione transferase; Article; biodegradation; data base; detoxification; ecology; enzyme activity; enzyme metabolism; forest; molecular dynamics; physical parameters; species identification; thermal analysis; Trametes versicolor; wood; wood durability |
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Abstract |
The natural durability of wood species, defined as their inherent resistance to wood-destroying agents, is a complex phenomenon depending on many biotic and abiotic factors. Besides the presence of recalcitrant polymers, the presence of compounds with antimicrobial properties is known to be important to explain wood durability. Based on the advancement in our understanding of fungal detoxification systems, a reverse chemical ecology approach was proposed to explore wood natural durability using fungal glutathione transferases. A set of six glutathione transferases from the white-rot Trametes versicolor were used as targets to test wood extracts from seventeen French Guiana neotropical species. Fluorescent thermal shift assays quantified interactions between fungal glutathione transferases and these extracts. From these data, a model combining this approach and wood density significantly predicts the wood natural durability of the species tested previously using long-term soil bed tests. Overall, our findings confirm that detoxification systems could be used to explore the chemical environment encountered by wood-decaying fungi and also wood natural durability. © 2020 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology. |
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Université de Lorraine, INRAE, LERMAB, Nancy, France |
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John Wiley and Sons Ltd |
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17517907 (Issn) |
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955 |
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