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Jona Lasinio, G.; Pollice, A.; Marcon, E.; Fano, E.A. |
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Assessing the role of the spatial scale in the analysis of lagoon biodiversity. A case-study on the macrobenthic fauna of the Po River Delta |
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2017 |
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Ecological Indicators |
Abbreviated Journal |
Ecological Indicators |
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80 |
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303-315 |
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Biodiversity partitioning; Lagoon biodiversity; Macrobenthic fauna; Mixed effects models; Tsallis entropy |
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The analysis of benthic assemblages is a valuable tool to describe the ecological status of transitional water ecosystems, but species are extremely sensitive and respond to both microhabitat and seasonal differences. The identification of changes in the composition of the macrobenthic community in specific microhabitats can then be used as an “early warning” for environmental changes which may affect the economic and ecological importance of lagoons, through their provision of Ecosystem Services. From a conservational point of view, the appropriate definition of the spatial aggregation level of microhabitats or local communities is of crucial importance. The main objective of this work is to assess the role of the spatial scale in the analysis of lagoon biodiversity. First, we analyze the variation in the sample coverage for alternative aggregations of the monitoring stations in three lagoons of the Po River Delta. Then, we analyze the variation of a class of entropy indices by mixed effects models, properly accounting for the fixed effects of biotic and abiotic factors and random effects ruled by nested sources of variability corresponding to alternative definitions of local communities. Finally, we address biodiversity partitioning by a generalized diversity measure, namely the Tsallis entropy, and for alternative definitions of the local communities. The main results obtained by the proposed statistical protocol are presented, discussed and framed in the ecological context. © 2017 Elsevier Ltd |
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Dipartimento di Scienze della Vita e Biotecnologie, Università degli Studi di Ferrara, Ferrara, Italy |
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Export Date: 12 June 2017 |
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EcoFoG @ webmaster @ |
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755 |
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Groc, S.; Delabie, J.H.C.; Fernandez, F.; Petitclerc, F.; Corbara, B.; Leponce, M.; Céréghino, R.; Dejean, A. |
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Litter-dwelling ants as bioindicators to gauge the sustainability of small arboreal monocultures embedded in the Amazonian rainforest |
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2017 |
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Ecological Indicators |
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82 |
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43-49 |
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Ant diversity; Community alteration; Forest species; Functional traits; Human disturbance; Tree monocultures |
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One of the greatest threats to biodiversity and the sustainable functioning of ecosystems is the clearing of forests for agriculture. Because litter-dwelling ants are very good bioindicators of man-made disturbance, we used them to compare monospecific plantations of acacia trees, cocoa trees, rubber trees and pine trees with the surrounding Neotropical rainforest (in contrast to previous studies on forest fragments embedded in industrial monocultures). Although the global level of species turnover was weak, species richness decreased along a gradient from the forest (including a treefall gap) to the tree plantations among which the highest number of species was noted for the cocoa trees, which are known to be a good compromise between agriculture and conservation. Species composition was significantly different between natural habitats and the plantations that, in turn, were different from each other. Compared to the forest, alterations in the ant communities were (1) highest for the acacia and rubber trees, (2) intermediate for the cocoa trees, and, (3) surprisingly, far lower for the pine trees, likely due to very abundant litter. Functional traits only separated the rubber tree plantation from the other habitats due to the higher presence of exotic and leaf-cutting ants. This study shows that small monospecific stands are likely sustainable when embedded in the rainforest and that environmentally-friendly strategies can be planned accordingly. © 2017 Elsevier Ltd |
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Ecolab, Université de Toulouse, CNRS, INPT, UPS, Toulouse, France |
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758 |
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Torroba-Balmori, P.; Budde, K.B.; Heer, K.; González-Martínez, S.C.; Olsson, S.; Scotti-Saintagne, C.; Casalis, M.; Sonké, B.; Dick, C.W.; Heuertz, M. |
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Altitudinal gradients, biogeographic history and microhabitat adaptation affect fine-scale spatial genetic structure in African and Neotropical populations of an ancient tropical tree species |
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2017 |
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PLoS ONE |
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PLoS ONE |
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12 |
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8 |
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e0182515 |
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The analysis of fine-scale spatial genetic structure (FSGS) within populations can provide insights into eco-evolutionary processes. Restricted dispersal and locally occurring genetic drift are the primary causes for FSGS at equilibrium, as described in the isolation by distance (IBD) model. Beyond IBD expectations, spatial, environmental or historical factors can affect FSGS. We examined FSGS in seven African and Neotropical populations of the late-successional rain forest tree Symphonia globulifera L. f. (Clusiaceae) to discriminate the influence of drift-dispersal vs. landscape/ecological features and historical processes on FSGS. We used spatial principal component analysis and Bayesian clustering to assess spatial genetic heterogeneity at SSRs and examined its association with plastid DNA and habitat features. African populations (from Cameroon and São Tomé) displayed a stronger FSGS than Neotropical populations at both marker types (mean Sp = 0.025 vs. Sp = 0.008 at SSRs) and had a stronger spatial genetic heterogeneity. All three African populations occurred in pronounced altitudinal gradients, possibly restricting animal-mediated seed dispersal. Cyto-nuclear disequilibria in Cameroonian populations also suggested a legacy of biogeographic history to explain these genetic patterns. Conversely, Neotropical populations exhibited a weaker FSGS, which may reflect more efficient wide-ranging seed dispersal by Neotropical bats and other dispersers. The population from French Guiana displayed an association of plastid haplotypes with two morphotypes characterized by differential habitat preferences. Our results highlight the importance of the microenvironment for eco-evolutionary processes within persistent tropical tree populations. © 2017 Torroba-Balmori et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
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Smithsonian Tropical Research Institute, Panama |
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Export Date: 2 September 2017 |
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EcoFoG @ webmaster @ |
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762 |
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Talaga, S.; Leroy, C.; Guidez, A.; Dusfour, I.; Girod, R.; Dejean, A.; Murienne, J. |
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DNA reference libraries of French Guianese mosquitoes for barcoding and metabarcoding |
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2017 |
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PLoS ONE |
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PLoS ONE |
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12 |
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6 |
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e0176993 |
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The mosquito family (Diptera: Culicidae) constitutes the most medically important group of arthropods because certain species are vectors of human pathogens. In some parts of the world, the diversity is so high that the accurate delimitation and/or identification of species is challenging. A DNA-based identification system for all animals has been proposed, the socalled DNA barcoding approach. In this study, our objectives were (i) to establish DNA barcode libraries for the mosquitoes of French Guiana based on the COI and the 16S markers, (ii) to compare distance-based and tree-based methods of species delimitation to traditional taxonomy, and (iii) to evaluate the accuracy of each marker in identifying specimens. A total of 266 specimens belonging to 75 morphologically identified species or morphospecies were analyzed allowing us to delimit 86 DNA clusters with only 21 of them already present in the BOLD database. We thus provide a substantial contribution to the global mosquito barcoding initiative. Our results confirm that DNA barcodes can be successfully used to delimit and identify mosquito species with only a few cases where the marker could not distinguish closely related species. Our results also validate the presence of new species identified based on morphology, plus potential cases of cryptic species. We found that both COI and 16S markers performed very well, with successful identifications at the species level of up to 98% for COI and 97% for 16S when compared to traditional taxonomy. This shows great potential for the use of metabarcoding for vector monitoring and eco-epidemiological studies. © 2017 Talaga et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
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UMR EDB, CNRS, ENFA, Université de Toulouse Paul Sabatier, Toulouse, France |
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Export Date: 22 June 2017 |
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757 |
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Ghislain, B.; Clair, B. |
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Diversity in the organisation and lignification of tension wood fibre walls – A review |
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2017 |
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IAWA Journal |
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38 |
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2 |
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245-265 |
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diversity; fibres; G-layer; lignification; multilayered tension wood fibre walls; S1 + S2 + S3 + G; Tension wood |
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Tension wood, a tissue developed by angiosperm trees to actively recover their verticality, has long been defined by the presence of an unlignified cellulosic inner layer in the cell wall of fibres, called the G-layer. Although it was known that some species have no G-layer, the definition was appropriate since it enabled easy detection of tension wood zones using various staining techniques for either cellulose or lignin. For several years now, irrespective of its anatomical structure, tension wood has been defined by its high mechanical internal tensile stress. This definition enables screening of the diversity of cell walls in tension wood fibres. Recent results obtained in tropical species with tension wood with a delay in the lignification of the G-layer opened our eyes to the effective presence of large amounts of lignin in the G-layer of some species. This led us to review older literature mentioning the presence of lignin deposits in the G-layer and give them credit. Advances in the knowledge of tension wood fibres allow us to reconsider some previous classifications of the diversity in the organisation of the fibre walls of the tension wood. © 2017 International Association of Wood Anatomists. |
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CNRS, UMR EcoFoG, AgroParisTech, Cirad, INRA, Université des Antilles, Université de Guyane, Kourou, France |
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Export Date: 2 September 2017 |
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763 |
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Leba, L.-J.; Popovici, J.; Estevez, Y.; Pelleau, S.; Legrand, E.; Musset, L.; Duplais, C. |
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Antiplasmodial activities of dyes against Plasmodium falciparum asexual and sexual stages: Contrasted uptakes of triarylmethanes Brilliant green, Green S (E142), and Patent Blue V (E131) by erythrocytes |
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2017 |
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International Journal for Parasitology: Drugs and Drug Resistance |
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International Journal for Parasitology: Drugs and Drug Resistance |
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7 |
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3 |
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314-320 |
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Antimalarial dyes; Brilliant green; Drug uptake; Food dyes; Transmission blocking; Triarylmethanes |
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The search for safe antimalarial compounds acting against asexual symptom-responsible stages and sexual transmission-responsible forms of Plasmodium species is one of the major challenges in malaria elimination programs. So far, among current drugs approved for human use, only primaquine has transmission-blocking activity. The discovery of small molecules targeting different Plasmodium falciparum life stages remains a priority in antimalarial drug research. In this context, several independent studies have recently reported antiplasmodial and transmission-blocking activities of commonly used stains, dyes and fluorescent probes against P. falciparum including chloroquine-resistant isolates. Herein we have studied the antimalarial activities of dyes with different scaffold and we report that the triarylmethane dye (TRAM) Brilliant green inhibits the growth of asexual stages (IC50 ≤ 2 μM) and has exflagellation-blocking activity (IC50 ≤ 800 nM) against P. falciparum reference strains (3D7, 7G8) and chloroquine-resistant clinical isolate (Q206). In a second step we have investigated the antiplasmodial activities of two polysulfonated triarylmethane food dyes. Green S (E142) is weakly active against P. falciparum asexual stage (IC50 ≃ 17 μM) whereas Patent Blue V (E131) is inactive in both antimalarial assays. By applying liquid chromatography techniques for the culture supernatant analysis after cell washings and lysis, we report the detection of Brilliant green in erythrocytes, the selective uptake of Green S (E142) by infected erythrocytes, whereas Patent Blue V (E131) could not be detected within non-infected and 3D7-infected erythrocytes. Overall, our results suggest that two polysulfonated food dyes might display different affinity with transporters or channels on infected RBC membrane. © 2017 The Authors |
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Research Unit of Genetics and Genomics of Insect Vectors Institut Pasteur, Paris, France |
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Export Date: 18 September 2017 |
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765 |
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Ploton, P.; Barbier, N.; Couteron, P.; Antin, C.M.; Ayyappan, N.; Balachandran, N.; Barathan, N.; Bastin, J.-F.; Chuyong, G.; Dauby, G.; Droissart, V.; Gastellu-Etchegorry, J.-P.; Kamdem, N.G.; Kenfack, D.; Libalah, M.; Mofack, G., II; Momo, S.T.; Pargal, S.; Petronelli, P.; Proisy, C.; Réjou-Méchain, M.; Sonké, B.; Texier, N.; Thomas, D.; Verley, P.; Zebaze Dongmo, D.; Berger, U.; Pélissier, R. |
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Toward a general tropical forest biomass prediction model from very high resolution optical satellite images |
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2017 |
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Remote Sensing of Environment |
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200 |
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140-153 |
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Canopy structure; Forest carbon; Fourier transform; Lacunarity; Passive optical imagery; Redd; Texture; Tropical forests |
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Very high spatial resolution (VHSR) optical satellite imagery has shown good potential to provide non-saturating proxies of tropical forest aboveground biomass (AGB) from the analysis of canopy texture, for instance through the Fourier Transform Textural Ordination method. Empirical case studies however showed that the relationship between Fourier texture features and forest AGB varies across forest types and regions of the world, limiting model transferability. A better understanding of the biophysical mechanisms on which canopy texture – forest AGB relation relies is a prerequisite to move toward broad scale applications. Here we simulated VHSR optical canopy scenes in identical sun-sensor geometry for 279 1-ha tropical forest inventory plots distributed across the tropics. Our aim was to assess the respective merits and complementarity of two types of texture analysis techniques (i.e. Fourier and lacunarity) on a set of forests with contrasted structure and geographical origin, and develop a general texture-based approach for tropical forest AGB mapping. Across forests, Fourier texture captured a gradient of stands mean crown size reflecting well the progressive changes in stand structure throughout forest aggradation phase (e.g. Pearson's r = − 0.42 with basal area) while lacunarity texture captured a gradient of canopy openness (, i.e. Pearson's r = − 0.57 with stand gap fraction). Both types of texture indices were highly complementary for predicting forest AGB at the global level (so-called FL-model). The residual error of the FL-model was structured across sites and could be partially captured with a bioclimatic proxy, further improving the performance of the global model (so-called FLE-model) and reducing site-level biases. The FLE model was tested on a set of real Pleiades images covering a mosaic of high-biomass forests in the Congo basin (mean AGB over 49 field plots: 359 ± 98 Mg ha− 1), leading to a significant relationship (R2 = 0.47 on validation data) with reasonable error levels (< 25% rRMSE). The increasing availability of VHSR optical sensors (such as from constellations of small satellite platforms) raises the possibility of routine repeated imaging of the world's tropical forests and suggests that texture-based analyses could become an essential tool in international efforts to monitor carbon emissions from deforestation and forest degradations (REDD +). © 2017 Elsevier Inc. |
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Technische Universität Dresden, Faculty of Environmental Sciences, Institute of Forest Growth and Forest Computer Sciences, Tharandt, Germany |
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Export Date: 25 September 2017 |
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766 |
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Leroy, C.; Jauneau, A.; Martinez, Y.; Cabin-Flaman, A.; Gibouin, D.; Orivel, J.; Séjalon-Delmas, N. |
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Exploring fungus-plant N transfer in a tripartite ant-plant-fungus mutualism |
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2017 |
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Annals of Botany |
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Annals of Botany |
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120 |
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3 |
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417-426 |
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Ascomycetes; endophytic fungi; Hirtella physophora; microscopy; mutualism; myrmecophyte; NanoSIMS; stable isotope |
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Background and Aims The plant Hirtella physophora, the ant Allomerus decemarticulatus and a fungus, Trimmatostroma sp., form a tripartite association. The ants manipulate both the plant trichomes and the fungus to build galleries under the stems of their host plant used to capture prey. In addition to its structural role, the fungus also improves nutrient uptake by the host plant. But it still remains unclear whether the fungus plays an indirect or a direct role in transferring nutrients to the plant. This study aimed to trace the transfer of N from the fungus to the plant's stem tissue. • Methods Optical microscopy and transmission electron microscopy (TEM) were used to investigate the presence of fungal hyphae in the stem tissues. Then, a 15N-labelling experiment was combined with a nanoscale secondary-ion mass spectrometry (NanoSIMS 50) isotopic imaging approach to trace the movement of added 15N from the fungus to plant tissues. • Key Results The TEM images clearly showed hyphae inside the stem tissue in the cellular compartment. Also, fungal hyphae were seen perforating the wall of the parenchyma cell. The 15N provisioning of the fungus in the galleries resulted in significant enrichment of the 15N signature of the plant's leaves 1 d after the 15N-labelling solution was deposited on the fungus-bearing trap. Finally, NanoSIMS imaging proved that nitrogen was transferred biotrophically from the fungus to the stem tissue. • Conclusions This study provides evidence that the fungi are connected endophytically to an ant-plant system and actively transfer nitrogen from 15N-labelling solution to the plant's stem tissues. Overall, this study underlines how complex the trophic structure of ant-plant interactions is due to the presence of the fungus and provides insight into the possibly important nutritional aspects and tradeoffs involved in myrmecophyte-ant mutualisms. © The Author 2017. |
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Laboratoire de Recherches en Sciences Végétales, Université de Toulouse, CNRS, UPS, France |
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Export Date: 2 October 2017 |
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767 |
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Dejean, A.; Petitclerc, F.; Compin, A.; Azémar, F.; Corbara, B.; Delabie, J.H.C.; Leroy, C. |
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Hollow internodes permit a neotropical understory plant to shelter multiple mutualistic ant species, obtaining protection and nutrient provisioning (myrmecotrophy) |
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2017 |
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American Naturalist |
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American Naturalist |
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190 |
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5 |
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E124-E131 |
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Ant-plant relationships; Biotic protection; Mutualism; Myrmecotrophy; Stable isotopes; Tachia guianensis |
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The Neotropical understory plant Tachia guianensis (Gentianaceae)- known to shelter the colonies of several ant species in its hollow trunks and branches-does not provide them with food rewards (e.g., extrafloral nectar). We tested whether these ants are opportunistic nesters or whether mutualistic relationships exist as for myrmecophytes or plants sheltering ant colonies in specialized hollow structures in exchange for protection from enemies and/or nutrient provisioning (myrmecotrophy). We noted 37 ant species sheltering inside T. guianensis internodes, three of them accounting for 43.5% of the cases. They protect their host plants from leaf-cutting ant defoliation and termite damage because individuals devoid of associated ants suffered significantly more attacks. Using the stable isotope 15N, we experimentally showed that the tested ant species furnish their host plants with nutrients. Therefore, a mutualism exists. However, because it is associated with numerous ant species, T. guianensis can be considered a nonspecialized myrmecophyte. © 2017 by The University of Chicago. |
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Institut de Recherche pour le Développement, UMR botAnique et Modélisation de l’Archtecture des Plantes et des Végétations, Cirad, CNRS, INRA, Université de Montpellier, Boulevard de la Lironde, TA A-51/PS2, Montpellier cedex 5, Brazil |
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Export Date: 2 November 2017 |
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EcoFoG @ webmaster @ |
Serial |
768 |
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Author |
Buckland, S.T.; Yuan, Y.; Marcon, E. |
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Title |
Measuring temporal trends in biodiversity |
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Journal Article |
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2017 |
Publication |
AStA Advances in Statistical Analysis |
Abbreviated Journal |
AStA Advances in Statistical Analysis |
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101 |
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4 |
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461-474 |
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Biodiversity measures; Diversity profiles; Geometric mean; Species similarity; Turnover measures |
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Abstract |
In 2002, nearly 200 nations signed up to the 2010 target of the Convention for Biological Diversity, ‘to significantly reduce the rate of biodiversity loss by 2010’. To assess whether the target was met, it became necessary to quantify temporal trends in measures of diversity. This resulted in a marked shift in focus for biodiversity measurement. We explore the developments in measuring biodiversity that was prompted by the 2010 target. We consider measures based on species proportions, and also explain why a geometric mean of relative abundance estimates was preferred to such measures for assessing progress towards the target. We look at the use of diversity profiles, and consider how species similarity can be incorporated into diversity measures. We also discuss measures of turnover that can be used to quantify shifts in community composition arising, for example, from climate change. © 2017, The Author(s). |
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UMR EcoFoG, AgroParisTech, Campus Agronomique, BP 316, Kourou, French Guiana, France |
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Cited By :1; Export Date: 2 November 2017 |
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no |
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Call Number |
EcoFoG @ webmaster @ |
Serial |
769 |
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