| |
Records |
Links |
|
Author |
Gonzalez, M.A.; Baraloto, C.; Engel, J.; Mori, S.A.; Petronelli, P.; Riera, B.; Roger, A.; Thebaud, C.; Chave, J. |
|
| |
Title |
Identification of Amazonian Trees with DNA Barcodes |
Type |
Journal Article |
| |
Year |
2009 |
Publication |
PLoS One |
Abbreviated Journal |
PLoS One |
|
| |
Volume |
4 |
Issue |
10 |
Pages |
e7483 |
|
| |
Keywords |
|
|
| |
Abstract |
Background: Large-scale plant diversity inventories are critical to develop informed conservation strategies. However, the workload required for classic taxonomic surveys remains high and is particularly problematic for megadiverse tropical forests. Methodology/Principal Findings: Based on a comprehensive census of all trees in two hectares of a tropical forest in French Guiana, we examined whether plant DNA barcoding could contribute to increasing the quality and the pace of tropical plant biodiversity surveys. Of the eight plant DNA markers we tested (rbcLa, rpoC1, rpoB, matK, ycf5, trnL, psbA-trnH, ITS), matK and ITS had a low rate of sequencing success. More critically, none of the plastid markers achieved a rate of correct plant identification greater than 70%, either alone or combined. The performance of all barcoding markers was noticeably low in few species-rich clades, such as the Laureae, and the Sapotaceae. A field test of the approach enabled us to detect 130 molecular operational taxonomic units in a sample of 252 juvenile trees. Including molecular markers increased the identification rate of juveniles from 72% (morphology alone) to 96% (morphology and molecular) of the individuals assigned to a known tree taxon. Conclusion/Significance: We conclude that while DNA barcoding is an invaluable tool for detecting errors in identifications and for identifying plants at juvenile stages, its limited ability to identify collections will constrain the practical implementation of DNA-based tropical plant biodiversity programs. |
|
| |
Address |
|
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
PUBLIC LIBRARY SCIENCE |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN  |
1932-6203 |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
ISI:000270880700009 |
Approved |
no |
|
| |
Call Number |
EcoFoG @ eric.marcon @ |
Serial |
189 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Dejean, A.; Corbara, B.; Leroy, C.; Delabie, J.H.C.; Rossi, V.; Cereghino, R. |
|
| |
Title |
Inherited Biotic Protection in a Neotropical Pioneer Plant |
Type |
Journal Article |
| |
Year |
2011 |
Publication |
PLoS One |
Abbreviated Journal |
PLoS One |
|
| |
Volume |
6 |
Issue |
3 |
Pages |
e18071 |
|
| |
Keywords |
|
|
| |
Abstract |
Chelonanthus alatus is a bat-pollinated, pioneer Gentianaceae that clusters in patches where still-standing, dried-out stems are interspersed among live individuals. Flowers bear circum-floral nectaries (CFNs) that are attractive to ants, and seed dispersal is both barochorous and anemochorous. Although, in this study, live individuals never sheltered ant colonies, dried-out hollow stems – that can remain standing for 2 years – did. Workers from species nesting in dried-out stems as well as from ground-nesting species exploited the CFNs of live C. alatus individuals in the same patches during the daytime, but were absent at night (when bat pollination occurs) on 60.5% of the plants. By visiting the CFNs, the ants indirectly protect the flowers – but not the plant foliage – from herbivorous insects. We show that this protection is provided mostly by species nesting in dried-out stems, predominantly Pseudomyrmex gracilis. That dried-out stems remain standing for years and are regularly replaced results in an opportunistic, but stable association where colonies are sheltered by one generation of dead C. alatus while the live individuals nearby, belonging to the next generation, provide them with nectar; in turn, the ants protect their flowers from herbivores. We suggest that the investment in wood by C. alatus individuals permitting still-standing, dried-out stems to shelter ant colonies constitutes an extended phenotype because foraging workers protect the flowers of live individuals in the same patch. Also, through this process these dried-out stems indirectly favor the reproduction (and so the fitness) of the next generation including both their own offspring and that of their siblings, all adding up to a potential case of inclusive fitness in plants. |
|
| |
Address |
[Dejean, Alain; Leroy, Celine] CNRS, Ecol Forets Guyane UMR CNRS 8172, Kourou, France, Email: alain.dejean@wanadoo.fr |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Public Library Science |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
1932-6203 |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
ISI:000289057200023 |
Approved |
no |
|
| |
Call Number |
EcoFoG @ webmaster @ |
Serial |
306 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Dejean, A. |
|
| |
Title |
Prey Capture Behavior in an Arboreal African Ponerine Ant |
Type |
Journal Article |
| |
Year |
2011 |
Publication |
PLoS One |
Abbreviated Journal |
PLoS One |
|
| |
Volume |
6 |
Issue |
5 |
Pages |
e19837 |
|
| |
Keywords |
|
|
| |
Abstract |
I studied the predatory behavior of Platythyrea conradti, an arboreal ponerine ant, whereas most species in this subfamily are ground-dwelling. The workers, which hunt solitarily only around dusk, are able to capture a wide range of prey, including termites and agile, nocturnal insects as well as diurnal insects that are inactive at that moment of the Nyctemeron, resting on tree branches or under leaves. Prey are captured very rapidly, and the antennal palpation used by ground-dwelling ponerine species is reduced to a simple contact; stinging occurs immediately thereafter. The venom has an instant, violent effect as even large prey (up to 30 times the weight of a worker) never struggled after being stung. Only small prey are not stung. Workers retrieve their prey, even large items, singly. To capture termite workers and soldiers defending their nest entrances, ant workers crouch and fold their antennae backward. In their role as guards, the termites face the crouching ants and end up by rolling onto their backs, their legs batting the air. This is likely due to volatile secretions produced by the ants' mandibular gland. The same behavior is used against competing ants, including territorially-dominant arboreal species that retreat further and further away, so that the P. conradti finally drive them from large, sugary food sources. |
|
| |
Address |
[Dejean, Alain] CNRS, Ecol Forets Guyane UMR 8172, Kourou, France, Email: alain.dejean@wanadoo.fr |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Public Library Science |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
1932-6203 |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
ISI:000290483600033 |
Approved |
no |
|
| |
Call Number |
EcoFoG @ webmaster @ |
Serial |
316 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Brouard, O.; Le Jeune, A.H.; Leroy, C.; Cereghino, R.; Roux, O.; Pelozuelo, L.; Dejean, A.; Corbara, B.; Carrias, J.F. |
|
| |
Title |
Are Algae Relevant to the Detritus-Based Food Web in Tank-Bromeliads? |
Type |
Journal Article |
| |
Year |
2011 |
Publication |
PLoS One |
Abbreviated Journal |
PLoS One |
|
| |
Volume |
6 |
Issue |
5 |
Pages |
e20129 |
|
| |
Keywords |
|
|
| |
Abstract |
We assessed the occurrence of algae in five species of tank-bromeliads found in contrasting environmental sites in a Neotropical, primary rainforest around the Nouragues Research Station, French Guiana. The distributions of both algal abundance and biomass were examined based on physical parameters, the morphological characteristics of bromeliad species and with regard to the structure of other aquatic microbial communities held in the tanks. Algae were retrieved in all of the bromeliad species with mean densities ranging from similar to 10(2) to 10(4) cells/mL. Their biomass was positively correlated to light exposure and bacterial biomass. Algae represented a tiny component of the detrital food web in shaded bromeliads but accounted for up to 30 percent of the living microbial carbon in the tanks of Catopsis berteroniana, located in a highly exposed area. Thus, while nutrient supplies are believed to originate from wind-borne particles and trapped insects (i.e., allochtonous organic matter), our results indicate that primary producers (i.e., autochtonous organic matter) are present in this insectivorous bromeliad. Using a 24-h incubation of size-fractionated and manipulated samples from this plant, we evaluated the impact of mosquito foraging on algae, other microorganisms and rotifers. The prey assemblages were greatly altered by the predation of mosquito larvae. Grazing losses indicated that the dominant algal taxon, Bumilleriopsis sp., like protozoa and rotifers, is a significant part of the diet of mosquito larvae. We conclude that algae are a relevant functional community of the aquatic food web in C. berteroniana and might form the basis of a complementary non-detrital food web. |
|
| |
Address |
[Brouard, Olivier; Le Jeune, Anne-Helene; Corbara, Bruno; Carrias, Jean-Francois] Univ Clermont Ferrand, CNRS, Lab Microorganismes Genome & Environm, LMGE,UMR 6023, Aubiere, France, Email: j-francois.carrias@univ-bpclermont.fr |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Public Library Science |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
1932-6203 |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
ISI:000290720200066 |
Approved |
no |
|
| |
Call Number |
EcoFoG @ webmaster @ |
Serial |
319 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Roux, O.; Cereghino, R.; Solano, P.J.; Dejean, A. |
|
| |
Title |
Caterpillars and Fungal Pathogens: Two Co-Occurring Parasites of an Ant-Plant Mutualism |
Type |
Journal Article |
| |
Year |
2011 |
Publication |
PLoS One |
Abbreviated Journal |
PLoS One |
|
| |
Volume |
6 |
Issue |
5 |
Pages |
e20538 |
|
| |
Keywords |
|
|
| |
Abstract |
In mutualisms, each interacting species obtains resources from its partner that it would obtain less efficiently if alone, and so derives a net fitness benefit. In exchange for shelter (domatia) and food, mutualistic plant-ants protect their host myrmecophytes from herbivores, encroaching vines and fungal pathogens. Although selective filters enable myrmecophytes to host those ant species most favorable to their fitness, some insects can by-pass these filters, exploiting the rewards supplied whilst providing nothing in return. This is the case in French Guiana for Cecropia obtusa (Cecropiaceae) as Pseudocabima guianalis caterpillars (Lepidoptera, Pyralidae) can colonize saplings before the installation of their mutualistic Azteca ants. The caterpillars shelter in the domatia and feed on food bodies (FBs) whose production increases as a result. They delay colonization by ants by weaving a silk shield above the youngest trichilium, where the FBs are produced, blocking access to them. This probable temporal priority effect also allows female moths to lay new eggs on trees that already shelter caterpillars, and so to occupy the niche longer and exploit Cecropia resources before colonization by ants. However, once incipient ant colonies are able to develop, they prevent further colonization by the caterpillars. Although no higher herbivory rates were noted, these caterpillars are ineffective in protecting their host trees from a pathogenic fungus, Fusarium moniliforme (Deuteromycetes), that develops on the trichilium in the absence of mutualistic ants. Therefore, the Cecropia treelets can be parasitized by two often overlooked species: the caterpillars that shelter in the domatia and feed on FBs, delaying colonization by mutualistic ants, and the fungal pathogen that develops on old trichilia. The cost of greater FB production plus the presence of the pathogenic fungus likely affect tree growth. |
|
| |
Address |
[Roux, Olivier; Dejean, Alain] CNRS, Ecol Forets Guyane UMR 8172, Kourou, France, Email: olivier.roux@ird.fr |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Public Library Science |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
1932-6203 |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
ISI:000291097600091 |
Approved |
no |
|
| |
Call Number |
EcoFoG @ webmaster @ |
Serial |
322 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Ruelle, J.; Yamamoto, H.; Thibaut, B. |
|
| |
Title |
Growth Stresses and Cellulose Structural Parameters in Tension and Normal Wood from Three Tropical Rainforest Angiosperm Species |
Type |
Journal Article |
| |
Year |
2007 |
Publication |
BioResources |
Abbreviated Journal |
BioResources |
|
| |
Volume |
2 |
Issue |
2 |
Pages |
235-251 |
|
| |
Keywords |
Cellulose; Microfibril angle; Crystallite size; Tension wood; Tropical rainforest; Growth stresses |
|
| |
Abstract |
Few studies have been conducted about relation between cellulose parameters and biomechanical properties of wood in tropical angiosperms species. For this purpose, on 13 trees from 3 species of French Guyana tropical rainforest in a clear active process of restoring verticality, i) growth strains were measured in situ in order to determine the occurrence of tension wood within samples and ii) cellulose structural parameters were estimated on all the samples using X-ray diffraction method. Crystallite size was estimated from the full-width at half-maximum of the Miller index (002) arc diffraction and angle T was measured following Cave's method. Relationships between these parameters and growth stresses were good and the variations between normal and tension wood were significant, i. e. a lower angle T and a larger crystallite size in tension wood. In order to have a good estimation of the microfibril angle in the main layer of the secondary wall for each species, an experimental calibration was done between angle T and microfibril angle observed with scanning electron microscopy. |
|
| |
Address |
[Ruelle, Julien; Thibaut, Bernard] UMR EcoFoG, Kourou 97387, Guyana, Email: ruelle_j@kourou.cirad.fr |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
NORTH CAROLINA STATE UNIV DEPT WOOD & PAPER SCI |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
1930-2126 |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
ISI:000263689300009 |
Approved |
no |
|
| |
Call Number |
EcoFoG @ eric.marcon @ |
Serial |
122 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Lehnebach, R.; Doumerc, L.; Clair, B.; Alméras, T. |
|
| |
Title |
Mechanical stress in the inner bark of 15 tropical tree species and the relationship with anatomical structure |
Type |
Journal Article |
| |
Year |
2020 |
Publication |
Botany |
Abbreviated Journal |
Bot. |
|
| |
Volume |
98 |
Issue |
1 |
Pages |
1-8 |
|
| |
Keywords |
Bark anatomical structure; Mechanical stress; Sclereids; Secondary phloem; Tree biomechanics; Tropical species |
|
| |
Abstract |
Recent studies have shown that the inner bark is implicated in the postural control of inclined tree stems through the interaction between wood radial growth and tangential expansion of a trellis fiber network in bark. Assessing the taxonomic extent of this mechanism requires a screening of the diversity in bark anatomy and mechanical stress. The mechanical state of bark was measured in 15 tropical tree species from various botanical families on vertical mature trees, and related to the anatomical structure of the bark. Significant tensile or compressive longitudinal stresses were observed in the stems of most species. Tensile longitudinal stress was observed in various botanical families and was always associated with fibers arranged in a trellis-like structure and strong dilatation of rays. The highest tensile stress was recorded in species with gelatinous fibers forming a treillis. Compressive stress was typically associated with a large amount of sclereids in the bark, supporting the differentiation of sclereids as a potential origin of the generation of longitudinal compressive stresses in bark. In species exhibiting both a fibrous trellis structure and a significant amount of sclereids, the sign of longitudinal stress may depend on the balance between these two mechanisms. |
|
| |
Address |
Faculty of Bioscience Engineering, Laboratory of Wood Technology, Woodlab, Coupure Links 653, Gent, B-9000, Belgium |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Canadian Science Publishing |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
19162804 (Issn) |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
Cited By :1; Export Date: 20 January 2020; Correspondence Address: Lehnebach, R.; Laboratoire de Mécanique et Génie Civil (LMGC), Université de Montpellier, CNRS, 860 rue de St. Priest, France; email: lehnebach.romain@hotmail.fr |
Approved |
no |
|
| |
Call Number |
EcoFoG @ webmaster @ |
Serial |
913 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Touchard, A.; Labrière, N.; Roux, O.; Petitclerc, F.; Orivel, J.; Escoubas, P.; Koh, J.M.S.; Nicholson, G.M.; Dejean, A. |
|
| |
Title |
Venom toxicity and composition in three Pseudomyrmex ant species having different nesting modes |
Type |
Journal Article |
| |
Year |
2014 |
Publication |
Toxicon |
Abbreviated Journal |
Toxicon |
|
| |
Volume |
88 |
Issue |
|
Pages |
67-76 |
|
| |
Keywords |
Ant venoms; Ants; Arboreal and ground-nesting ants; Evolution; Peptides; Pseudomyrmex; ant venom; acute toxicity; animal experiment; ant; article; biochemical composition; controlled study; disulfide bond; high performance liquid chromatography; lethality; matrix assisted laser desorption ionization time of flight mass spectrometry; molecular weight; myrmecophyte; nesting; nonhuman; predator prey interaction; priority journal; Pseudomyrmex gracilis; Pseudomyrmex penetrator; Pseudomyrmex termitarius; species diversity; toxin analysis |
|
| |
Abstract |
We aimed to determine whether the nesting habits of ants have influenced their venom toxicity and composition. We focused on the genus Pseudomyrmex (Pseudomyrmecinae) comprising terrestrial and arboreal species, and, among the latter, plant-ants that are obligate inhabitants of myrmecophytes (i.e., plants sheltering ants in hollow structures). Contrary to our hypothesis, the venom of the ground-dwelling species, Pseudomyrmex termitarius, was as efficacious in paralyzing prey as the venoms of the arboreal and the plant-ant species, Pseudomyrmexpenetrator and Pseudomyrmexgracilis. The lethal potency of P. termitarius venom was equipotent with that of P. gracilis whereas the venom of P. penetrator was less potent. The MALDI-TOF MS analysis of each HPLC fraction of the venoms showed that P. termitarius venom is composed of 87 linear peptides, while both P. gracilis and P. penetrator venoms (23 and 26 peptides, respectively) possess peptides with disulfide bonds. Furthermore, P. penetrator venom contains three hetero- and homodimeric peptides consisting of two short peptidic chains linked together by two interchain disulfide bonds. The large number of peptides in P. termitarius venom is likely related to the large diversity of potential prey plus the antibacterial peptides required for nesting in the ground. Whereas predation involves only the prey and predator, P. penetrator venom has evolved in an environment where trees, defoliating insects, browsing mammals and ants live in equilibrium, likely explaining the diversity of the peptide structures. © 2014 Elsevier Ltd. All rights reserved. |
|
| |
Address |
Laboratoire Écologie Fonctionnelle et Environnement, 118 Route de Narbonne, 31062 Toulouse, France |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Elsevier Ltd |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
18793150 (Issn) |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
Export Date: 30 July 2014; Coden: Toxia; Correspondence Address: Labrière, N.; CNRS, UMR Ecologie des Forêts de Guyane (EcoFoG), Campus Agronomique, BP 316, 97379 Kourou cedex, France |
Approved |
no |
|
| |
Call Number |
EcoFoG @ webmaster @ |
Serial |
553 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Nixon, S.; Agwa, A.; Robinson, S.; Walker, A.; Touchard, A.; Schroeder, C.; Vetter, I.; Kotze, A.C.; Herzig, V.; King, G.F. |
|
| |
Title |
Discovery and characterisation of novel peptides from Amazonian stinging ant venoms with antiparasitic activity |
Type |
Journal Article |
| |
Year |
2020 |
Publication |
Toxicon |
Abbreviated Journal |
Toxicon |
|
| |
Volume |
177 |
Issue |
1 |
Pages |
S60 |
|
| |
Keywords |
|
|
| |
Abstract |
|
|
| |
Address |
The Institute for Molecular Bioscience, The University of Queensland, Australia; CSIRO Agriculture and Food, Australia; CNRS, UMR Ecologie des forêts de Guyane, France |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
NLM (Medline) |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
18793150 (Issn) |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
|
Approved |
no |
|
| |
Call Number |
EcoFoG @ webmaster @ |
Serial |
973 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Meyer-Sand, B.R.V.; Blanc-Jolivet, C.; Mader, M.; Paredes-Villanueva, K.; Tysklind, N.; Sebbenn, A.M.; Guichoux, E.; Degen, B. |
|
| |
Title |
Development of a set of SNP markers for population genetics studies of Ipe (Handroanthus sp.), a valuable tree genus from Latin America |
Type |
Journal Article |
| |
Year |
2018 |
Publication |
Conservation Genetics Resources |
Abbreviated Journal |
Conserv. Gen. Res. |
|
| |
Volume |
10 |
Issue |
4 |
Pages |
779-781 |
|
| |
Keywords |
Handroanthus sp; MassARRAY; Single nucleotide polymorphism |
|
| |
Abstract |
A combination of restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing was used for the development of single nucleotide polymorphisms (SNP) and INDEL (insertion/deletions) genetic markers for Ipe (Handroanthus sp.). Of the 402 putative loci identified, 389 SNPs and INDELs (315 nuclear SPNs, six chloroplast INDELs, 15 chloroplast SNPs, 12 mitochondrial INDELs and 41 mitochondrial SNPs) were successfully genotyped at 93 individuals from Brazil, Bolivia and French Guiana using a MassARRAY® iPLEX™ platform. This set of markers will be invaluable for population genetics, phylogeography and DNA fingerprinting studies. © 2017, Springer Science+Business Media B.V., part of Springer Nature. |
|
| |
Address |
Plateforme Génome Transcriptome de Bordeaux, INRA Pierroton, Bâtiment Artiga, 69 route d’Arcachon, Cestas, 33610, France |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Netherlands |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
18777252 (Issn) |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
Export Date: 12 November 2018; Correspondence Address: Blanc-Jolivet, C.; Thünen Institute of Forest Genetics, Sieker Landstrasse 2, Germany; email: celine.blanc-jolivet@thuenen.de; References: Blanc-Jolivet, C., Kersten, B., Bourland, N., Guichoux, E., Delcamp, A., Doucet, J.-L., Degen, B., Development of nuclear SNP markers for the timber tracking of the African tree species Sapelli, Entandrophragma cylindricum (2017) Conserv Genet Resour; Blanc-Jolivet, C., Kersten, B., Daïnou, K., Hardy, O., Guichoux, E., Delcamp, A., Degen, B., Development of nuclear SNP markers for genetic tracking of Iroko, Milicia excelsa and Milicia regia (2017) Conserv Genet Resour; Braga, A.C., Reis, A.M.M., Leoi, L.T., Pereira, R.W., Collevatti, R.G., Development and characterization of microsatellite markers for the tropical tree species Tabebuia aurea (Bignoniaceae) (2007) Mol Ecol Notes, 7, pp. 53-56. , COI: 1:CAS:528:DC%2BD2sXis1Sjuro%3D; Dumolin, S., Demesure, B., Pettit, R., Inheritance of chloroplast and mitochondrial genomes in pedunculate oak investigated with an efficient PCR method (1995) Theor Appl Genet, 91, pp. 1253-1256. , COI: 1:CAS:528:DyaK28XhsFKmsLo%3D; Goudet, J., Fstat (Version 2.9.3.2.): a computer program to calculate F-statistics (2002) J Heredity, 86, pp. 485-486; Grose, S.O., Olmstead, R.G., Evolution of a charismatic neotropical clade: molecular phylogeny of Tabebuia s. L crescentieae, and allied genera (Bignoniaceae) (2007) Syst Bot, 32, pp. 650-659; Jardine, D.I., Blanc-Jolivet, C., Dixon, R.R.M., Dormontt, E.E., Dunker, B., Gerlach, J., Development of SNP markers for Ayous (Triplochiton scleroxylon K. Schum) an economically important tree species from tropical West and Central Africa (2016) Conserv Genet Resour, 8 (2), pp. 129-139; Miller, M.R., Dunham, J.P., Amores, A., Cresko, W.A., Johnson, E.A., Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers (2007) Genome Res, 17, pp. 240-248. , COI: 1:CAS:528:DC%2BD2sXhsFKis7w%3D; Pakull, B., Mader, M., Kersten, B., Ekue, M.R.M., Dipelet, U.G.B., Paulini, M., Development of nuclear, chloroplast and mitochondrial SNP markers for Khaya sp (2016) Conserv Genet Resour, 8 (3), pp. 283-297; Schulze, M., Grogan, J., Uhl, C., Lentini, M., Vidal, E., Evaluating Ipê (Tabebuia, Bignoniaceae) logging in amazonia: Sustainable management or catalyst for forest degradation? (2008) Biol Conserv, 141, pp. 2071-2085; Straub, S.C., Parks, M., Weitemier, K., fishbein, M., Cronn, R.C., Liston, A., Navigating the tip of the genomic iceberg: next-generation sequencing for plant systematics (2012) Am J Bot, 99, pp. 349-364. , COI: 1:CAS:528:DC%2BC38XksValtbo%3D |
Approved |
no |
|
| |
Call Number |
EcoFoG @ webmaster @ |
Serial |
832 |
|
| Permanent link to this record |
