| Records |
| Author |
Gargallo-Garriga, Albert ; Sardans, Jordi ; Alrefaei, Abdulwahed Fahad ; Klem, Karel ; Fuchslueger, Lucia ; Ramirez-Rojas, Irène ; Donald, Julian ; Leroy, Celine ; Van Langenhove, Leandro ; Verbruggen, Erik ; Janssens, Ivan A. ; Urban, Otmar ; Penuelas, Josep |
| Title |
Tree Species and Epiphyte Taxa Determine the “Metabolomic niche” of Canopy Suspended Soils in a Species-Rich Lowland Tropical Rainforest |
Type |
Journal Article |
| Year |
2021 |
Publication |
Metabolites |
Abbreviated Journal |
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| Volume |
11 |
Issue |
11 |
Pages  |
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| Keywords |
Bacteria, Canopy soils, Epiphyte, French Guiana, Metabolomics |
| Abstract |
Tropical forests are biodiversity hotspots, but it is not well understood how this diversity is structured and maintained. One hypothesis rests on the generation of a range of metabolic niches, with varied composition, supporting a high species diversity. Characterizing soil metabolomes can reveal fine-scale differences in composition and potentially help explain variation across these habitats. In particular, little is known about canopy soils, which are unique habitats that are likely to be sources of additional biodiversity and biogeochemical cycling in tropical forests. We studied the effects of diverse tree species and epiphytes on soil metabolomic profiles of forest floor and canopy suspended soils in a French Guianese rainforest. We found that the metabolomic profiles of canopy suspended soils were distinct from those of forest floor soils, differing between epiphyte-associated and non-epiphyte suspended soils, and the metabolomic profiles of suspended soils varied with host tree species, regardless of association with epiphyte. Thus, tree species is a key driver of rainforest suspended soil metabolomics. We found greater abundance of metabolites in suspended soils, particularly in groups associated with plants, such as phenolic compounds, and with metabolic pathways related to amino acids, nucleotides, and energy metabolism, due to the greater relative proportion of tree and epiphyte organic material derived from litter and root exudates, indicating a strong legacy of parent biological material. Our study provides evidence for the role of tree and epiphyte species in canopy soil metabolomic composition and in maintaining the high levels of soil metabolome diversity in this tropical rainforest. It is likely that a wide array of canopy microsite-level environmental conditions, which reflect interactions between trees and epiphytes, increase the microscale diversity in suspended soil metabolomes |
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MDPI |
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EcoFoG @ webmaster @ |
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1041 |
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Derroire, Géraldine ; Piponiot, Camille ; Descroix, Laurent ; Bedeau, Caroline ; Traissac, Stéphane ; Brunaux, Olivier ; Hérault, Bruno |
| Title |
Prospective carbon balance of the wood sector in a tropical forest territory using a temporally-explicit model |
Type |
Journal Article |
| Year |
2021 |
Publication |
Forest Ecology and Management |
Abbreviated Journal |
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| Volume |
497 |
Issue |
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Pages |
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| Keywords |
Exploitation forestière, Production du bois, Modélisation environnementale, planification de la gestion forestière, forêt tropicale, Aménagement forestier, Plantations, Évaluation de l'impac |
| Abstract |
Selective logging in tropical forests is often perceived as a source of forest degradation and carbon emissions. Improved practices, such as reduced-impact logging (RIL), and alternative timber production strategies (e.g. plantations) can drastically change the overall carbon impact of the wood production sector. Assessing the carbon balance of timber production is crucial but highly dependent on methodological approaches, especially regarding system boundaries and temporality. We developed a temporally-explicit and territory scale model of carbon balance calibrated with long-term local data using Bayesian inference. The model accounts for carbon fluxes from selective logging in natural forest, timber plantation, first transformation and avoided emissions through energy substitution. We used it to compare prospective scenarios of development for the wood sector in French Guiana. Results show that intensification of practices, through increased logging intensity conducted with RIL and establishment of timber plantations, are promising development strategies to reduce the carbon emissions of the French-Guianese wood sector, as well as the area needed for wood production and hence the pressure on natural forests. By reducing logging damage by nearly 50%, RIL allows increasing logging intensity in natural forest from 20 m3 ha−1 to 30 m3 ha−1 without affecting the carbon balance. The use of logging byproducts as fuelwood also improved the carbon balance of selective logging, when substituted to fossil fuel. Allocating less than 30 000 ha to plantation would allow producing 200 000 m3 of timber annually, while the same production in natural forest would imply logging more than 400 000 ha over 60 years. Timber plantation should be preferentially established on non-forested lands, as converting natural forests to plantation leads to high carbon emission peak over the first three decades. We recommend a mixed-strategy combining selective logging in natural forests and plantations as a way to improve long-term carbon balance while reducing short-term emissions. This strategy can reduce the pressure on natural forests while mitigating the risks of changing practices and allowing a diversified source of timber for a diversity of uses. It requires adaptation of the wood sector and development of technical guidelines. Research and monitoring efforts are also needed to assess the impacts of changing practices on other ecosystem services, especially biodiversity conservation. |
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Elsevier |
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EcoFoG @ webmaster @ |
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1019 |
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Blundo, Cecilia ; Carilla, Julieta ; Grau, Ricardo ; Malizia, Malizia ; Malizia, Lucio ; Osinaga-Acosta, Oriana ; Bird, Michael ;Bradford, Matt ; Catchpole, Damien ; Ford, Ford ;Graham, Andrew ; Hilbert, David ; Kemp, Jeanette ; Laurance, Susan ; Laurance, William ; Yoko Ishida, Françoise ; Marshall, Andrew ; Waite, Catherine ; ForestPlots.net nx, Cecilia Blundo a, Julieta Carilla a, Ricardo Grau a, Agustina Malizia a, Lucio Malizia b, Oriana Osinaga-Acosta a, Michael Bird c, Matt Bradford d, Damien Catchpole e, Andrew Ford d, Andrew Graham f, David Hilbert g, Jeanette Kemp h, Susan Laurance i, William Laurance i, Francoise Yoko Ishida j, Andrew Marshall k,l,m, Catherine Waite k, Hannsjoerg Woell n, Jean-Francois Bastin o, Marijn Bauters p, Hans Beeckman q, Pfascal Boeckx r, Jan Bogaert s, Charles De Canniere t, Thales de Haulleville u, Jean-Louis Doucet v, Olivier Hardy w, Wannes Hubau x, Elizabeth Kearsley y, Hans Verbeeck z, Jason Vleminckx aa, Steven W. Brewer ab, Alfredo Alarc´on ac, Alejandro Araujo-Murakami ad, Eric Arets ae, Luzmila Arroyo ad, Ezequiel Chavez af, Todd Fredericksen ac, Ren´e Guill´en Villaroel ag, Gloria Gutierrez Sibauty ah, Timothy Killeen ai, Juan Carlos Licona ac, John Lleigue ae, Casimiro Mendoza aj, Samaria Murakami ae, Alexander Parada Gutierrez ad, Guido Pardo ak, Marielos Pe˜na-Claros ae, Lourens Poorter ae, Marisol Toledo al, Jeanneth Villalobos Cayo am, Laura Jessica Viscarra ai, Vincent Vos an, Jorge Ahumada ao, Everton Almeida ap, Jarcilene Almeida aq, Edmar Almeida de Oliveira ar, Wesley Alves da Cruz as, Atila Alves de Oliveira at, Fabrício Alvim Carvalho au, Fl´avio Amorim Obermuller av, Ana Andrade aw, Fernanda Antunes Carvalho ax, Simone Aparecida Vieira ay, Ana Carla Aquino az, Luiz Arag˜ao ba, Ana Claudia Araújo bb, Marco Antonio Assis bc, Jose Ataliba Mantelli Aboin Gomes bd, Fabrício Baccaro be, Plínio Barbosa de Camargo bf, Paulo Barni bg, Jorcely Barroso bh, Luis Carlos Bernacci bi, Kauane Bordin bj, Marcelo Brilhante de Medeiros bk, Igor Broggio bl, Jos´e Luís Camargo av, Domingos Cardoso bm, Maria Antonia Carniello as, Andre Luis Casarin Rochelle bn, Carolina Castilho bo, Antonio Alberto Jorge Farias Castro bp, Wendeson Castro bq, Sabina Cerruto Ribeiro bh, Fl´avia Costa br, Rodrigo Costa de Oliveira bs, Italo Coutinho bt, John Cunha bu, Lola da Costa bv, Lucia da Costa Ferreira bw, Richarlly da Costa Silva bx, Marta da Graça Zacarias Simbine ay, Vitor de Andrade Kamimura bc, Haroldo Cavalcante de Lima by, Lia de Oliveira Melo bz, Luciano de Queiroz ca, Jos´e Romualdo de Sousa Lima cb, M´ario do Espírito Santo cc, Tomas Domingues cd, Nayane Cristina dos Santos Prestes ce, Steffan Eduardo Silva Carneiro cf, Fernando Elias cg, Gabriel Eliseu cf, Thaise Emilio ch, Camila Laís Farrapo ci, Letícia Fernandes bh, Gustavo Ferreira cf, Joice Ferreira bk, Leandro Ferreira cj, Socorro Ferreira ck, Marcelo Fragomeni Simon bk, Maria Aparecida Freitas cl, Queila S. García cm, Angelo Gilberto Manzatto cn, Paulo Graça co, Frederico Guilherme cf, Eduardo Hase cl, Niro Higuchi cp, Mariana Iguatemy cq, Reinaldo Imbrozio Barbosa cr, Margarita Jaramillo cs, Woell n, Jean-Francois Bastin o, Marijn Bauters p, Hans Beeckman q, Pfascal Boeckx r, Jan Bogaert s, Charles De Canniere t, Thales de Haulleville u, Jean-Louis Doucet v, Olivier Hardy w, Wannes Hubau x, Elizabeth Kearsley y, Hans Verbeeck z, Jason Vleminckx aa, Steven W. Brewer ab, Alfredo Alarc´on ac, Alejandro Araujo-Murakami ad, Eric Arets ae, Luzmila Arroyo ad, Ezequiel Chavez af, Todd Fredericksen ac, Ren´e Guill´en Villaroel ag, Gloria Gutierrez Sibauty ah, Timothy Killeen ai, Juan Carlos Licona ac, John Lleigue ae, Casimiro Mendoza aj, Samaria Murakami ae, Alexander Parada Gutierrez ad, Guido Pardo ak, Marielos Pe˜na-Claros ae, Lourens Poorter ae, Marisol Toledo al, Jeanneth Villalobos Cayo am, Laura Jessica Viscarra ai, Vincent Vos an, Jorge Ahumada ao, Everton Almeida ap, Jarcilene Almeida aq, Edmar Almeida de Oliveira ar, Wesley Alves da Cruz as, Atila Alves de Oliveira at, Fabrício Alvim Carvalho au, Fl´avio Amorim Obermuller av, Ana Andrade aw, Fernanda Antunes Carvalho ax, Simone Aparecida Vieira ay, Ana Carla Aquino az, Luiz Arag˜ao ba, Ana Claudia Araújo bb, Marco Antonio Assis bc, Jose Ataliba Mantelli Aboin Gomes bd, Fabrício Baccaro be, Plínio Barbosa de Camargo bf, Paulo Barni bg, Jorcely Barroso bh, Luis Carlos Bernacci bi, Kauane Bordin bj, Marcelo Brilhante de Medeiros bk, Igor Broggio bl, Jos´e Luís Camargo av, Domingos Cardoso bm, Maria Antonia Carniello as, Andre Luis Casarin Rochelle bn, Carolina Castilho bo, Antonio Alberto Jorge Farias Castro bp, Wendeson Castro bq, Sabina Cerruto Ribeiro bh, Fl´avia Costa br, Rodrigo Costa de Oliveira bs, Italo Coutinho bt, John Cunha bu, Lola da Costa bv, Lucia da Costa Ferreira bw, Richarlly da Costa Silva bx, Marta da Graça Zacarias Simbine ay, Vitor de Andrade Kamimura bc, Haroldo Cavalcante de Lima by, Lia de Oliveira Melo bz, Luciano de Queiroz ca, Jos´e Romualdo de Sousa Lima cb, M´ario do Espírito Santo cc, Tomas Domingues cd, Nayane Cristina dos Santos Prestes ce, Steffan Eduardo Silva Carneiro cf, Fernando Elias cg, Gabriel Eliseu cf, Thaise Emilio ch, Camila Laís Farrapo ci, Letícia Fernandes bh, Gustavo Ferreira cf, Joice Ferreira bk, Leandro Ferreira cj, Socorro Ferreira ck, Marcelo Fragomeni Simon bk, Maria Aparecida Freitas cl, Queila S. García cm, Angelo Gilberto Manzatto cn, Paulo Graça co, Frederico Guilherme cf, Eduardo Hase cl, Niro Higuchi cp, Mariana Iguatemy cq, Reinaldo Imbrozio Barbosa cr, Margarita Jaramillo cs, |
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EcoFoG @ webmaster @ |
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1020 |
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Li, Lingjuan ; Preece, Catherine ; Lin, Qiang ; Bréchet, Laëtitia M. ; Stahl, Clément ; Courtois, Elodie A. ; Verbruggen, Erik |
| Title |
Resistance and resilience of soil prokaryotic communities in response to prolonged drought in a tropical forest |
Type |
Journal Article |
| Year |
2021 |
Publication |
FEMS Microbiology Ecology |
Abbreviated Journal |
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| Volume |
97 |
Issue |
9 |
Pages |
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| Keywords |
drought, microbial communities, microbial network, tropical forest, resistance, resilience |
| Abstract |
Global climate changes such as prolonged duration and intensity of drought can lead to adverse ecological consequences in forests. Currently little is known about soil microbial community responses to such drought regimes in tropical forests. In this study, we examined the resistance and resilience of topsoil prokaryotic communities to a prolongation of the dry season in terms of diversity, community structure and co-occurrence patterns in a French Guianan tropical forest. Through excluding rainfall during and after the dry season, a simulated prolongation of the dry season by five months was compared to controls. Our results show that prokaryotic communities increasingly diverged from controls with the progression of rain exclusion. Furthermore, prolonged drought significantly affected microbial co-occurrence networks. However, both the composition and co-occurrence networks of soil prokaryotic communities immediately ceased to differ from controls when precipitation throughfall returned. This study thus suggests modest resistance but high resilience of microbial communities to a prolonged drought in tropical rainforest soils. |
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Oxford Academy |
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EcoFoG @ webmaster @ |
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1032 |
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Amani, Bienvenu H.K. ; N'Guessan, Anny E. ; Derroire, Géraldine ; N'dja, Justin K. ; Elogne, Aka G. M. ; Traoré, Karidia ; Zo-Bi, Irie C. ; Hérault, Bruno |
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The potential of secondary forests to restore biodiversity of the lost forests in semi-deciduous West Africa |
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Journal Article |
| Year |
2021 |
Publication |
Biological Conservation |
Abbreviated Journal |
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259 |
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In West Africa, more than 80% of the original forest cover has disappeared due to the exponential growth of human populations in a recurrent search for new agricultural land. Once the fertility of the land is exhausted, these areas are abandoned and left to be reforested through natural succession. Despite the widespread presence of secondary forests of various ages in West African landscapes, little is known about the trajectories of recovery and the environmental factors that influence recovery rates. We set up 96 0.2 ha forest plots, along a chronosequence of 1 to 40 years and including 7 controls, on which all trees larger than 2.5 cm in diameter at breast height were inventoried. We modelled the recovery trajectories of four complementary dimensions of biodiversity (richness, diversity, composition, indicators of old-growth forest) in a Bayesian framework. Our results show that the four dimensions of biodiversity recover at different rates, with composition recovering much faster than floristic diversity. Among the local, landscape, and historical factors studied, the number of remnants and proximity to old-growth forests have a positive impact on recovery rates, with, under good environmental conditions, the composition, richness, and diversity being almost completely recovered in less than 25 years. Our results demonstrate the very high resilience of the composition of the semi-deciduous forests of West Africa, but also suggest that the management of these post-forest areas must be differentiated according to the landscape context and the presence of isolated trees, which are the last vestiges of the former forest. In unfavourable conditions, natural dynamics should be assisted by agroforestry practices and local tree planting to allow for a rapid restoration of forest goods and services to local populations. |
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Elsevier B.V. |
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EcoFoG @ webmaster @ |
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1010 |
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Prevost-Boure, N.C.; Ngao, J.; Berveiller, D.; Bonal, D.; Damesin, C.; Dufrene, E.; Lata, J.C.; Le Dantec, V.; Longdoz, B.; Ponton, S.; Soudani, K.; Epron, D. |
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Root exclusion through trenching does not affect the isotopic composition of soil CO2 efflux |
Type |
Journal Article |
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2009 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
| Volume |
319 |
Issue |
1-2 |
Pages |
1-13 |
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Stable carbon isotopes; Natural abundance; Soil respiration; Trenched plot; Rainforest; Temperate forest |
| Abstract |
Disentangling the autotrophic and heterotrophic components of soil CO2 efflux is critical to understanding the role of soil system in terrestrial carbon (C) cycling. In this study, we combined a stable C-isotope natural abundance approach with the trenched plot method to determine if root exclusion significantly affected the isotopic composition (delta C-13) of soil CO2 efflux (R-S). This study was performed in different forest ecosystems: a tropical rainforest and two temperate broadleaved forests, where trenched plots had previously been installed. At each site, R-S and its delta C-13 (delta C-13(Rs)) tended to be lower in trenched plots than in control plots. Contrary to R-S, delta C-13(Rs) differences were not significant. This observation is consistent with the small differences in delta C-13 measured on organic matter from root, litter and soil. The lack of an effect on delta C-13(Rs) by root exclusion could be from the small difference in delta C-13 between autotrophic and heterotrophic soil respirations, but further investigations are needed because of potential artefacts associated with the root exclusion technique. |
| Address |
[Prevost-Boure, Nicolas Chemidlin; Berveiller, Daniel; Damesin, Claire; Dufrene, Eric; Lata, Jean-Christophe; Soudani, Kamel] Univ Paris Sud, Lab Ecol Systemat & Evolut, AgroParisTech, CNRS,UMR 8079, F-75231 Paris, France, Email: nicolas.chemidlin-prevost-boure@u-psud.fr |
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SPRINGER |
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0032-079X |
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ISI:000266143400001 |
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no |
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EcoFoG @ eric.marcon @ |
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203 |
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Vantaux, A.; Roux, O.; Magro, A.; Orivel, J. |
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Evolutionary perspectives on myrmecophily in ladybirds |
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Journal Article |
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2012 |
Publication |
Psyche |
Abbreviated Journal |
Psyche |
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591570 |
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1-7 |
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| Abstract |
Myrmecophiles are species that usually have developed specialized traits to cope with the aggressiveness of ants enabling them to live in their vicinity. Many coccinellid species are predators of Hemiptera; the latter is also often protected by ants. Therefore these ladybirds frequently interact with ants, and some species have become myrmecophilous. In this paper, we aim to provide an overview of the evolution of myrmecophilous traits in ladybirds. We then discuss the costs and benefits of myrmecophily and the dietary shift to myrmecophagy observed in a few species. Copyright © 2012 Amélie Vantaux et al. |
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CNRS, UMR EcoFoG-Ecologie des Forêts de Guyane, Campus Agronomique, BP 316, 97379 Kourou Cedex, France |
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00332615 (Issn) |
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Export Date: 28 March 2012; Source: Scopus; Art. No.: 591570; doi: 10.1155/2012/591570; Language of Original Document: English; Correspondence Address: Vantaux, A.; Entomology Laboratory, Zoological Institute, Catholic University of Leuven, Naamsestraat 59, 3000 Leuven, Belgium; email: amelie.vantaux@gmail.com |
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EcoFoG @ webmaster @ |
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388 |
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Lacau, S.; Groc, S.; Dejean, A.; Oliveira, M.L.D.; Delabie, J.H.C. |
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Tatuidris kapasi sp. nov.: A new armadillo ant from French Guiana (Formicidae: Agroecomyrmecinae) |
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Journal Article |
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2012 |
Publication |
Psyche |
Abbreviated Journal |
Psyche |
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926089 |
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1-6 |
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Tatuidris kapasi sp. nov. (Formicidae: Agroecomyrmecinae), the second known species of “armadillo ant”, is described after a remarkable specimen collected in French Guiana. This species can be easily distinguished from Tatuidris tatusia by characters related to the shape of the mesosoma and petiole as well as to the pilosity, the sculpture, and the color. Copyright © 2012 Sébastien Lacau et al. |
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Laboratório de Mirmecologia, CEPLAC/CEPEC/SECEN, CP 07, km 22, Rodovia, Ilhéus-Itabuna, 45600-970 Itabuna, BA, Brazil |
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00332615 (Issn) |
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Export Date: 28 March 2012; Source: Scopus; Art. No.: 926089; doi: 10.1155/2012/926089; Language of Original Document: English; Correspondence Address: Lacau, S.; Laboratório de Biossistemática Animal, Universidade Estadual Do Sudoeste da Bahia, UESB/DEBI, 45700-000 Itapetinga, BA, Brazil; email: slacau@cepec.gov.br |
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EcoFoG @ webmaster @ |
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389 |
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Vedel, V.; Rheims, C.; Murienne, J.; Brescovit, A.D. |
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Biodiversity baseline of the French Guiana spider fauna |
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Journal Article |
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2013 |
Publication |
SpringerPlus |
Abbreviated Journal |
SpringerPlus |
| Volume |
2 |
Issue |
1 |
Pages |
1-19 |
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Arachnids; Araneae; Bio monitoring; French Guiana; Neotropics; Species richness |
| Abstract |
The need for an updated list of spiders found in French Guiana rose recently due to many upcoming studies planned. In this paper, we list spiders from French Guiana from existing literature (with corrected nomenclature when necessary) and from 2142 spiders sampled in 12 sites for this baseline study. Three hundred and sixty four validated species names of spider were found in the literature and previous authors' works. Additional sampling, conducted for this study added another 89 identified species and 62 other species with only a genus name for now. The total species of spiders sampled in French Guiana is currently 515. Many other Morphospecies were found but not described as species yet. An accumulation curve was drawn with seven of the sampling sites and shows no plateau yet. Therefore, the number of species inhabiting French Guiana cannot yet be determined. As the very large number of singletons found in the collected materials suggests, the accumulation curve indicates nevertheless that more sampling is necessary to discover the many unknown spider species living in French Guiana, with a focus on specific periods (dry season and wet season) and on specific and poorly studied habitats such as canopy, inselberg and cambrouze (local bamboo monospecific forest). © 2013 Vedel et al. |
| Address |
CNRS, EFA, UMR 5174 EDB (Laboratoire Evolution et Diversité Biologique), Université Paul Sabatier, 118 route de Narbonne, F-31062 Toulouse, France |
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21931801 (Issn) |
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Export Date: 25 November 2013; Source: Scopus; doi: 10.1186/2193-1801-2-361; Language of Original Document: English; Correspondence Address: Vedel, V.; Laboratoire d'entomologie Entobios, 5 Bis rue François Thomas, 97310 Kourou, Guyane Française, France; email: vincent.vedel@ecofog.gf |
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EcoFoG @ webmaster @ |
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510 |
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| Author |
Brousseau, L.; Tinaut, A.; Duret, C.; Lang, T.; Garnier-Gere, P.; Scotti, I. |
| Title |
High-throughput transcriptome sequencing and preliminary functional analysis in four Neotropical tree species |
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Journal Article |
| Year |
2014 |
Publication |
BMC Genomics |
Abbreviated Journal |
BMC Genomics |
| Volume |
15 |
Issue |
238 |
Pages |
1-13 |
| Keywords |
454-Pyrosequencing; Polymorphism discovery; Tropical rainforest tree species |
| Abstract |
Background: The Amazonian rainforest is predicted to suffer from ongoing environmental changes. Despite the need to evaluate the impact of such changes on tree genetic diversity, we almost entirely lack genomic resources. Results: In this study, we analysed the transcriptome of four tropical tree species (Carapa guianensis, Eperua falcata, Symphonia globulifera and Virola michelii) with contrasting ecological features, belonging to four widespread botanical families (respectively Meliaceae, Fabaceae, Clusiaceae and Myristicaceae). We sequenced cDNA libraries from three organs (leaves, stems, and roots) using 454 pyrosequencing. We have developed an R and bioperl-based bioinformatic procedure for de novo assembly, gene functional annotation and marker discovery. Mismatch identification takes into account single-base quality values as well as the likelihood of false variants as a function of contig depth and number of sequenced chromosomes. Between 17103 (for Symphonia globulifera) and 23390 (for Eperua falcata) contigs were assembled. Organs varied in the numbers of unigenes they apparently express, with higher number in roots. Patterns of gene expression were similar across species, with metabolism of aromatic compounds standing out as an overrepresented gene function. Transcripts corresponding to several gene functions were found to be over- or underrepresented in each organ. We identified between 4434 (for Symphonia globulifera) and 9076 (for Virola surinamensis) well-supported mismatches. The resulting overall mismatch density was comprised between 0.89 (S. globulifera) and 1.05 (V. surinamensis) mismatches/100 bp in variation-containing contigs.Conclusion: The relative representation of gene functions in the four transcriptomes suggests that secondary metabolism may be particularly important in tropical trees. The differential representation of transcripts among tissues suggests differential gene expression, which opens the way to functional studies in these non-model, ecologically important species. We found substantial amounts of mismatches in the four species. These newly identified putative variants are a first step towards acquiring much needed genomic resources for tropical tree species. © 2014 Brousseau et al.; licensee BioMed Central Ltd. |
| Address |
BIOGECO, UMR 1202, University of Bordeaux, F-33400 Talence, France |
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| Publisher |
BioMed Central Ltd. |
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14712164 (Issn) |
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| Notes |
Export Date: 18 April 2014; Source: Scopus; Art. No.: 238; Coden: Bgmee; Language of Original Document: English; Correspondence Address: Scotti, I.; INRA, UMR 0745 EcoFoG, Campus agronomique BP 709, F-97387 Cedex, France; email: ivan.scotti@ecofog.gf |
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EcoFoG @ webmaster @ |
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537 |
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