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Gao, H.; Grüschow, S.; Barke, J.; Seipke, R.F.; Hill, L.M.; Orivel, J.; Yu, D.W.; Hutchings, M.; Goss, R.J.M. |
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Filipins: The first antifungal “weed killers” identified from bacteria isolated from the trap-ant |
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2014 |
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RSC Advances |
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RSC Adv. |
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4 |
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100 |
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57267-57270 |
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Anti-fungal |
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Allomerus ants ensure that they have sufficient nitrogen in their diet by trapping and consuming other insects. In order to construct their traps, like the more extensively studied leaf cutter ants, they employ fungal farming. Pest management within these fungal cultures has been speculated to be due to the ants' usage of actinomycetes capable of producing antifungal compounds, analogous to the leafcutter ant mutualism. Here we report the first identification of a series of antifungal compounds, the filipins, and their associated biosynthetic genes isolated from a bacterium associated with this system. |
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State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of ZoologyKunming, Yunnan, China |
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Royal Society of Chemistry |
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Export Date: 20 November 2014; Coden: Rscac; Correspondence Address: Goss, R.J.M.; School of Chemistry, University of St. AndrewsUnited Kingdom; Funding Details: 311848, EC, European Commission |
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EcoFoG @ webmaster @ |
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567 |
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Fanin, N.; Barantal, S.; Fromin, N.; Schimann, H.; Schevin, P.; Hattenschwiler, S. |
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Distinct Microbial Limitations in Litter and Underlying Soil Revealed by Carbon and Nutrient Fertilization in a Tropical Rainforest |
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2012 |
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PLoS ONE |
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7 |
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12 |
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e49990 |
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Human-caused alterations of the carbon and nutrient cycles are expected to impact tropical ecosystems in the near future. Here we evaluated how a combined change in carbon (C), nitrogen (N) and phosphorus (P) availability affects soil and litter microbial respiration and litter decomposition in an undisturbed Amazonian rainforest in French Guiana. In a fully factorial C (as cellulose), N (as urea), and P (as phosphate) fertilization experiment we analyzed a total of 540 litterbag-soil pairs after a 158-day exposure in the field. Rates of substrate-induced respiration (SIR) measured in litter and litter mass loss were similarly affected by fertilization showing the strongest stimulation when N and P were added simultaneously. The stimulating NP effect on litter SIR increased considerably with increasing initial dissolved organic carbon (DOC) concentrations in litter, suggesting that the combined availability of N, P, and a labile C source has a particularly strong effect on microbial activity. Cellulose fertilization, however, did not further stimulate the NP effect. In contrast to litter SIR and litter mass loss, soil SIR was reduced with N fertilization and showed only a positive effect in response to P fertilization that was further enhanced with additional C fertilization. Our data suggest that increased nutrient enrichment in the studied Amazonian rainforest can considerably change microbial activity and litter decomposition, and that these effects differ between the litter layer and the underlying soil. Any resulting change in relative C and nutrient fluxes between the litter layer and the soil can have important consequences for biogeochemical cycles in tropical forest ecosystems. © 2012 Fanin et al. |
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UMR Ecologie des Forêts de Guyane (EcoFoG), Campus Agronomique, Kourou, French Guiana |
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Export Date: 3 January 2013; Source: Scopus; Art. No.: e49990 |
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EcoFoG @ webmaster @ |
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454 |
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Grau, O.; Peñuelas, J.; Ferry, B.; Freycon, V.; Blanc, L.; Desprez, M.; Baraloto, C.; Chave, J.; Descroix, L.; Dourdain, A.; Guitet, S.; Janssens, I.A.; Sardans, J.; Herault, B. |
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Nutrient-cycling mechanisms other than the direct absorption from soil may control forest structure and dynamics in poor Amazonian soils |
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Journal Article |
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2017 |
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Scientific Reports |
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Sci. Rep. |
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7 |
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45017 |
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biomass; forest structure; French Guiana; mortality; nutrient availability; nutrient content; nutrient cycling; nutrient uptake; productivity; soil; storage; tropical rain forest |
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Tropical forests store large amounts of biomass despite they generally grow in nutrient-poor soils, suggesting that the role of soil characteristics in the structure and dynamics of tropical forests is complex. We used data for >34 000 trees from several permanent plots in French Guiana to investigate if soil characteristics could predict the structure (tree diameter, density and aboveground biomass), and dynamics (growth, mortality, aboveground wood productivity) of nutrient-poor tropical forests. Most variables did not covary with site-level changes in soil nutrient content, indicating that nutrient-cycling mechanisms other than the direct absorption from soil (e.g. the nutrient uptake from litter, the resorption, or the storage of nutrients in the biomass), may strongly control forest structure and dynamics. Ecosystem-level adaptations to low soil nutrient availability and long-term low levels of disturbance may help to account for the lower productivity and higher accumulation of biomass in nutrient-poor forests compared to nutrient-richer forests. |
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Export Date: 8 April 2017 |
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EcoFoG @ webmaster @ |
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748 |
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Zalamea, P.-C.; Heuret, P.; Sarmiento, C.; Rodríguez, M.; Berthouly, A.; Guitet, S.; Nicolini, E.; Delnatte, C.; Barthélémy, D.; Stevenson, P.R. |
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The genus Cecropia: A biological clock to estimate the age of recently disturbed areas in the neotropics |
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Journal Article |
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2012 |
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PLoS ONE |
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PLoS ONE |
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7 |
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8 |
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e42643 |
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Forest successional processes following disturbance take decades to play out, even in tropical forests. Nonetheless, records of vegetation change in this ecosystem are scarce, increasing the importance of the chronosequence approach to study forest recovery. However, this approach requires accurate dating of secondary forests, which until now was a difficult and/or expensive task. Cecropia is a widespread and abundant pioneer tree genus of the Neotropics. Here we propose and validate a rapid and straightforward method to estimate the age of secondary forest patches based on morphological observations of Cecropia trees. We found that Cecropia-inferred ages were highly correlated with known ages of the forest. We also demonstrate that Cecropia can be used to accurately date disturbances and propose twenty-one species distributed all over the geographical range of the genus as potential secondary forest chronometer species. Our method is limited in applicability by the maximal longevity of Cecropia individuals. Although the oldest chronosequence used in this study was 20 years old, we argue that at least for the first four decades after disturbance, the method described in this study provides very accurate estimations of secondary forest ages. The age of pioneer trees provides not only information needed to calculate the recovery of carbon stocks that would help to improve forest management, but also provides information needed to characterize the initial floristic composition and the rates of species remigration into secondary forest. Our contribution shows how successional studies can be reliably and inexpensively extended without the need to obtain forest ages based on expensive or potentially inaccurate data across the Neotropics. © 2012 Zalamea et al. |
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Smithsonian Tropical Research Institute, Ancón, Panama |
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19326203 (Issn) |
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Export Date: 29 August 2012; Source: Scopus; Art. No.: e42643; doi: 10.1371/journal.pone.0042643; Language of Original Document: English; Correspondence Address: Zalamea, P.-C.; Smithsonian Tropical Research Institute, Ancón, Panama; email: camilozalamea@gmail.com |
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EcoFoG @ webmaster @ |
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424 |
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Thevenin, J.-M.; Rossi, V.; Ducamp, M.; Doare, F.; Condina, V.; Lachenaud, P. |
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Numerous clones resistant to Phytophthora palmivora in the “Guiana” genetic group of Theobroma cacao L |
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Journal Article |
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2012 |
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PLoS ONE |
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PLoS ONE |
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7 |
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7 |
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e40915 |
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Cocoa black pod rot, a disease caused by Stramenopiles of the genus Phytophthora, and particularly by the pan-tropical species P. palmivora, causes serious production losses worldwide. In order to reduce the impact of these pests and diseases, preference is given to genetic control using resistant varieties and, to that end, breeders seek sources of resistance in wild cocoa trees. For instance, surveys of spontaneous cocoa trees in French Guiana between 1985 and 1995 led to the collection of abundant plant material forming a particular genetic group (the “Guiana” group). Following numerous one-off studies demonstrating the merits of this group as a source of resistance to Phytophthora, this article presents the results of a comprehensive study assessing the resistance of 186 “Guiana” clones in relation to the Guianan strain (GY 27) of P. palmivora. This study, undertaken in French Guiana, using an efficient methodology (ten series of tests and a statistical test adapted to the ordinal nature of the data) confirmed that the “Guiana” genetic group does indeed constitute an important source of resistance to P. palmivora, though with some variations depending on the demes of origin. Numerous clones (59) proved to be as resistant as the SCAVINA 6 resistance control, whilst nine were statistically more resistant. The “Resistant” and “Moderately Resistant” Guianan clones totalled 108 (58% of the total tested). Some of the clones more resistant than SCAVINA 6 could be incorporated into numerous cocoa breeding programmes, particularly those that also display other notable qualities. The same applies for numerous other clones equivalent to SCAVINA 6, especially the “elite”' clones GU 134-B, GU 139-A and GU 285-A. © 2012 Thevenin et al. |
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CIRAD, UMR BGPI, Montpellier, France |
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19326203 (Issn) |
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Export Date: 16 August 2012; Source: Scopus; Art. No.: e40915; doi: 10.1371/journal.pone.0040915; Language of Original Document: English; Correspondence Address: Thevenin, J.-M.; CIRAD, UPR Bioagresseurs: Analyse et Maîtrise du Risque, Kourou, Guyane, France; email: jean-marc.thevenin@cirad.fr |
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EcoFoG @ webmaster @ |
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423 |
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Barthe, S.; Gugerli, F.; Barkley, N.A.; Maggia, L.; Cardi, C.; Scotti, I. |
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Always look on both sides: Phylogenetic information conveyed by simple sequence repeat allele sequences |
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Journal Article |
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2012 |
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PLoS ONE |
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PLoS ONE |
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7 |
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7 |
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e40699 |
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Simple sequence repeat (SSR) markers are widely used tools for inferences about genetic diversity, phylogeography and spatial genetic structure. Their applications assume that variation among alleles is essentially caused by an expansion or contraction of the number of repeats and that, accessorily, mutations in the target sequences follow the stepwise mutation model (SMM). Generally speaking, PCR amplicon sizes are used as direct indicators of the number of SSR repeats composing an allele with the data analysis either ignoring the extent of allele size differences or assuming that there is a direct correlation between differences in amplicon size and evolutionary distance. However, without precisely knowing the kind and distribution of polymorphism within an allele (SSR and the associated flanking region (FR) sequences), it is hard to say what kind of evolutionary message is conveyed by such a synthetic descriptor of polymorphism as DNA amplicon size. In this study, we sequenced several SSR alleles in multiple populations of three divergent tree genera and disentangled the types of polymorphisms contained in each portion of the DNA amplicon containing an SSR. The patterns of diversity provided by amplicon size variation, SSR variation itself, insertions/deletions (indels), and single nucleotide polymorphisms (SNPs) observed in the FRs were compared. Amplicon size variation largely reflected SSR repeat number. The amount of variation was as large in FRs as in the SSR itself. The former contributed significantly to the phylogenetic information and sometimes was the main source of differentiation among individuals and populations contained by FR and SSR regions of SSR markers. The presence of mutations occurring at different rates within a marker's sequence offers the opportunity to analyse evolutionary events occurring on various timescales, but at the same time calls for caution in the interpretation of SSR marker data when the distribution of within-locus polymorphism is not known. |
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Unité Mixte de Recherche Ecologie des forêts de Guyane, Institut National de la Recherche Agronomique, Kourou, French Guiana |
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19326203 (Issn) |
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Export Date: 30 July 2012; Source: Scopus; Art. No.: e40699; doi: 10.1371/journal.pone.0040699; Language of Original Document: English; Correspondence Address: Scotti, I.; Unité Mixte de Recherche Ecologie des forêts de Guyane, Institut National de la Recherche Agronomique, Kourou, French Guiana; email: ivan.scotti@ecofog.gf |
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EcoFoG @ webmaster @ |
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416 |
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Sullivan, M.J.P.; Talbot, J.; Lewis, S.L.; Phillips, O.L.; Qie, L.; Begne, S.K.; Chave, J.; Cuni-Sanchez, A.; Hubau, W.; Lopez-Gonzalez, G.; Miles, L.; Monteagudo-Mendoza, A.; Sonké, B.; Sunderland, T.; Ter Steege, H.; White, L.J.T.; Affum-Baffoe, K.; Aiba, S.-I.; De Almeida, E.C.; De Oliveira, E.A.; Alvarez-Loayza, P.; Dávila, E.Á.; Andrade, A.; Aragão, L.E.O.C.; Ashton, P.; Aymard, G.A.; Baker, T.R.; Balinga, M.; Banin, L.F.; Baraloto, C.; Bastin, J.-F.; Berry, N.; Bogaert, J.; Bonal, D.; Bongers, F.; Brienen, R.; Camargo, J.L.C.; Cerón, C.; Moscoso, V.C.; Chezeaux, E.; Clark, C.J.; Pacheco, Á.C.; Comiskey, J.A.; Valverde, F.C.; Coronado, E.N.H.; Dargie, G.; Davies, S.J.; De Canniere, C.; Djuikouo, M.N.; Doucet, J.-L.; Erwin, T.L.; Espejo, J.S.; Ewango, C.E.N.; Fauset, S.; Feldpausch, T.R.; Herrera, R.; Gilpin, M.; Gloor, E.; Hall, J.S.; Harris, D.J.; Hart, T.B.; Kartawinata, K.; Kho, L.K.; Kitayama, K.; Laurance, S.G.W.; Laurance, W.F.; Leal, M.E.; Lovejoy, T.; Lovett, J.C.; Lukasu, F.M.; Makana, J.-R.; Malhi, Y.; Maracahipes, L.; Marimon, B.S.; Junior, B.H.M.; Marshall, A.R.; Morandi, P.S.; Mukendi, J.T.; Mukinzi, J.; Nilus, R.; Vargas, P.N.; Camacho, N.C.P.; Pardo, G.; Peña-Claros, M.; Petronelli, P.; Pickavance, G.C.; Poulsen, A.D.; Poulsen, J.R.; Primack, R.B.; Priyadi, H.; Quesada, C.A.; Reitsma, J.; Réjou-Méchain, M.; Restrepo, Z.; Rutishauser, E.; Salim, K.A.; Salomão, R.P.; Samsoedin, I.; Sheil, D.; Sierra, R.; Silveira, M.; Slik, J.W.F.; Steel, L.; Taedoumg, H.; Tan, S.; Terborgh, J.W.; Thomas, S.C.; Toledo, M.; Umunay, P.M.; Gamarra, L.V.; Vieira, I.C.G.; Vos, V.A.; Wang, O.; Willcock, S.; Zemagho, L. |
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Title |
Diversity and carbon storage across the tropical forest biome |
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Journal Article |
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2017 |
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Scientific Reports |
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Sci. Rep. |
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7 |
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39102 |
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Tropical forests are global centres of biodiversity and carbon storage. Many tropical countries aspire to protect forest to fulfil biodiversity and climate mitigation policy targets, but the conservation strategies needed to achieve these two functions depend critically on the tropical forest tree diversity-carbon storage relationship. Assessing this relationship is challenging due to the scarcity of inventories where carbon stocks in aboveground biomass and species identifications have been simultaneously and robustly quantified. Here, we compile a unique pan-Tropical dataset of 360 plots located in structurally intact old-growth closed-canopy forest, surveyed using standardised methods, allowing a multi-scale evaluation of diversity-carbon relationships in tropical forests. Diversity-carbon relationships among all plots at 1 ha scale across the tropics are absent, and within continents are either weak (Asia) or absent (Amazonia, Africa). A weak positive relationship is detectable within 1 ha plots, indicating that diversity effects in tropical forests may be scale dependent. The absence of clear diversity-carbon relationships at scales relevant to conservation planning means that carbon-centred conservation strategies will inevitably miss many high diversity ecosystems. As tropical forests can have any combination of tree diversity and carbon stocks both require explicit consideration when optimising policies to manage tropical carbon and biodiversity. © The Author(s) 2017. |
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School of Environment, Natural Resources and Geography, Bangor University, Bangor, United Kingdom |
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Export Date: 3 February 2017 |
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EcoFoG @ webmaster @ |
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725 |
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Dejean, A.; Delabie, J.H.; Corbara, B.; Azémar, F.; Groc, S.; Orivel, J.; Leponce, M. |
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The ecology and feeding habits of the arboreal trap-jawed ant Daceton armigerum |
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2012 |
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PloS one |
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PLoS ONE |
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7 |
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5 |
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e37683 |
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animal; ant; article; ecology; feeding behavior; Hemiptera; physiology; predation; Animals; Ants; Ecology; Feeding Behavior; Hemiptera; Predatory Behavior |
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Here we show that Daceton armigerum, an arboreal myrmicine ant whose workers are equipped with hypertrophied trap-jaw mandibles, is characterized by a set of unexpected biological traits including colony size, aggressiveness, trophobiosis and hunting behavior. The size of one colony has been evaluated at ca. 952,000 individuals. Intra- and interspecific aggressiveness were tested and an equiprobable null model used to show how D. armigerum colonies react vis-à-vis other arboreal ant species with large colonies; it happens that D. armigerum can share trees with certain of these species. As they hunt by sight, workers occupy their hunting areas only during the daytime, but stay on chemical trails between nests at night so that the center of their home range is occupied 24 hours a day. Workers tend different Hemiptera taxa (i.e., Coccidae, Pseudococcidae, Membracidae and Aethalionidae). Through group-hunting, short-range recruitment and spread-eagling prey, workers can capture a wide range of prey (up to 94.12 times the mean weight of foraging workers). |
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Écologie des Forêts de Guyane, Campus Agronomique, Kourou, France. |
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19326203 (Issn) |
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Export Date: 2 November 2012; Source: Scopus; doi: 10.1371/journal.pone.0037683; PubMed ID: 22737205; Language of Original Document: English; Correspondence Address: Dejean, A.email: alain.dejean@wanadoo.fr |
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EcoFoG @ webmaster @ |
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443 |
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Wagner, F.; Rossi, V.; Stahl, C.; Bonal, D.; Herault, B. |
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Water availability is the main climate driver of neotropical tree growth |
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2012 |
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PLoS ONE |
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PLoS ONE |
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7 |
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4 |
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e34074 |
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Climate models for the coming century predict rainfall reduction in the Amazonian region, including change in water availability for tropical rainforests. Here, we test the extent to which climate variables related to water regime, temperature and irradiance shape the growth trajectories of neotropical trees. We developed a diameter growth model explicitly designed to work with asynchronous climate and growth data. Growth trajectories of 205 individual trees from 54 neotropical species censused every 2 months over a 4-year period were used to rank 9 climate variables and find the best predictive model. About 9% of the individual variation in tree growth was imputable to the seasonal variation of climate. Relative extractable water was the main predictor and alone explained more than 60% of the climate effect on tree growth, i.e. 5.4% of the individual variation in tree growth. Furthermore, the global annual tree growth was more dependent on the diameter increment at the onset of the rain season than on the duration of dry season. The best predictive model included 3 climate variables: relative extractable water, minimum temperature and irradiance. The root mean squared error of prediction (0.035 mm.d -1) was slightly above the mean value of the growth (0.026 mm.d -1). Amongst climate variables, we highlight the predominant role of water availability in determining seasonal variation in tree growth of neotropical forest trees and the need to include these relationships in forest simulators to test, in silico, the impact of different climate scenarios on the future dynamics of the rainforest. © 2012 Wagner et al. |
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INRA, UMR 'Ecologie et Ecophysiologie Forestière', Champenoux, France |
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Export Date: 24 April 2012; Source: Scopus; Art. No.: e34074; doi: 10.1371/journal.pone.0034074; Language of Original Document: English; Correspondence Address: Wagner, F.; Université des Antilles et de la Guyane, UMR 'Ecologie des Forêts de Guyane', BP 709, Kourou, France; email: fabien.wagner@ecofog.gf |
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EcoFoG @ webmaster @ |
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394 |
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Dezecache, Camille; Faure, Emmanuel; Gond, Valéry; Salles, Jean-Michel; Vieilledent, Ghislain; Herault, Bruno |
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Gold-rush in a forested El Dorado: deforestation leakages and the need for regional cooperation |
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2017 |
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Environmental Research Letters |
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12 |
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3 |
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034013 |
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Tropical forests of the Guiana Shield are the most affected by gold-mining in South America, experiencing an exponential increase in deforestation since the early 2000’s. Using yearly deforestation data encompassing Guyana, Suriname, French Guiana and the Brazilian State of Amapá, we demonstrated a strong relationship between deforestation due to gold-mining and gold-prices at the regional scale. In order to assess additional drivers of deforestation due to gold-mining, we focused on the national scale and highlighted the heterogeneity of the response to gold-prices under different political contexts. Deforestation due to gold-mining over the Guiana Shield occurs mainly in Guyana and Suriname. On the contrary, past and current repressive policies in Amapá and French Guiana likely contribute to the decorrelation of deforestation and gold prices. In this work, we finally present a case study focusing on French Guiana and Suriname, two neighbouring countries with very different levels of law enforcement against illegal gold-mining. We developed a modelling framework to estimate potential deforestation leakages from French Guiana to Suriname in the border areas. Based on our assumptions, we estimated a decrease in deforestation due to gold-mining of approx. 4300 hectares in French Guiana and an increase of approx. 12 100 hectares in Suriname in response to the active military repression of illegal gold-mining launched in French Guiana. Gold-mining in the Guiana Shield provides challenging questions regarding REDD+ implementation. These questions are discussed at the end of this study and are important to policy makers who need to provide sustainable alternative employment to local populations in order to ensure the effectiveness of environmental policies. |
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