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Remy, C.C.; Fleury, M.; Beauchene, J.; Rivier, M.; Goli, T. |
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Analysis of PAH Residues and Amounts of Phenols in Fish Smoked with Woods Traditionally Used in French Guiana |
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2016 |
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Journal of Ethnobiology |
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Journal of Ethnobiology |
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36 |
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2 |
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312-325 |
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French Guiana; phenols; polycyclic aromatic hydrocarbons; smoked fish; traditional knowledge |
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Fish smoking with local wood species is a traditional practice in French Guiana. We evaluated the carcinogenic risk and the smoky taste in acoupa weakfish (Cynoscion acoupa) smoked by a small Guianese company specializing in fish smoking using local wood species. The goal of this study is to promote regional economic development by encouraging the establishment of small companies offering fish smoked with local wood species in agreement with the European health norms in terms of polycyclic aromatic hydrocarbon (PAH) content in smoked fish. The fish smoked with three species of wood traditionally used in French Guiana, Parinari campestris, Caesaria grandiflora, and Laetia procera, conformed to European standards for PAH content. Their phenol contents (correlated with the smoky taste) were close to smoked salmon, the reference in Europe. Given the low rate of extractable compounds in these woods, other flavors had little chance of predominating on the smoky taste. These three tropical wood species might be used for the production of cold smoked fish in compliance with European standards for PAH residues. The flavor and consumer's acceptance of the smoked fish should now be investigated to characterize the added typicity of local woods in comparison to the commonly used European woods. © 2016 Society of Ethnobiology. |
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4UMR Qualisud, CIRAD Persyst Bât, France |
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Export Date: 1 September 2016 |
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EcoFoG @ webmaster @ |
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692 |
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Guitet, S.; Sabatier, D.; Brunaux, O.; Couteron, P.; Denis, T.; Freycon, V.; Gonzalez, S.; Hérault, B.; Jaouen, G.; Molino, J.-F.; Pélissier, R.; Richard-Hansen, C.; Vincent, G. |
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Disturbance Regimes Drive the Diversity of Regional Floristic Pools Across Guianan Rainforest Landscapes |
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Journal Article |
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2018 |
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Scientific Reports |
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Sci. Rep. |
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8 |
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3872 |
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Disturbances control rainforest dynamics, and, according to the intermediate disturbance hypothesis (IDH), disturbance regime is a key driver of local diversity. Variations in disturbance regimes and their consequences on regional diversity at broad spatiotemporal scales are still poorly understood. Using multidisciplinary large-scale inventories and LiDAR acquisitions, we developed a robust indicator of disturbance regimes based on the frequency of a few early successional and widely distributed pioneer species. We demonstrate at the landscape scale that tree-species diversity and disturbance regimes vary with climate and relief. Significant relationships between the disturbance indicator, tree-species diversity and soil phosphorus content agree with the hypothesis that rainforest diversity is controlled both by disturbance regimes and long-term ecosystem stability. These effects explain the broad-scale patterns of floristic diversity observed between landscapes. In fact, species-rich forests in highlands, which have benefited from long-term stability combined with a moderate and regular regime of local disturbances, contrast with less diversified forests on recently shaped lowlands, which have undergone more recent changes and irregular dynamics. These results suggest that taking the current disturbance regime into account and including geomorphological stratifications in climate-vegetation models may be an effective way to improve the prediction of changes in species diversity under climate change. © 2018 The Author(s). |
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AgroParisTech, EcoFoG, Kourou, French Guiana |
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Export Date: 21 March 2018 |
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798 |
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Marcon, E.; Traissac, S.; Puech, F.; Lang, G. |
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Tools to characterize point patterns: dbmss for R |
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2015 |
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Journal of Statistical Software |
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Journal of Statistical Software |
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67 |
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Codesnippet3 |
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1-15 |
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Point patterns; R; Spatial structure |
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The dbmss package for R provides an easy-to-use toolbox to characterize the spatial structure of point patterns. Our contribution presents the state of the art of distance-based methods employed in economic geography and which are also used in ecology. Topographic functions such as Ripley’s K, absolute functions such as Duranton and Overman’s Kd and relative functions such as Marcon and Puech’s M are implemented. Their confidence envelopes (including global ones) and tests against counterfactuals are included in the package. © 2015, American Statistical Association. All rights reserved. |
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AgroParisTech, INRA, UMR 518 Math. Info. Appli., 16 rue Claude Bernard, Paris, France |
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Export Date: 22 October 2015 |
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EcoFoG @ webmaster @ |
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635 |
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Christensen-Dalsgaard, K.K.; Ennos, A.R.; Fournier, M. |
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Changes in hydraulic conductivity, mechanical properties, and density reflecting the fall in strain along the lateral roots of two species of tropical trees |
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Journal Article |
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2007 |
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Journal of Experimental Botany |
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J. Exp. Bot. |
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58 |
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15-16 |
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4095-4105 |
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Buttress roots; Density; Hydraulic conductivity; Hydraulic-mechanical trade-offs; Modulus of elasticity; Tropical trees; Wood; Elastic moduli; Hydraulic conductivity; Wood; Buttress roots; Hydraulic-mechanical trade-offs; Tropical trees; Forestry; water; article; biomechanics; histology; legume; physiology; plant root; plant stem; tree; wood; Xylopia; Biomechanics; Fabaceae; Plant Roots; Plant Stems; Trees; Water; Wood; Xylopia; Conductivity; Elastic Strength; Forestry; Wood |
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Roots have been described as having larger vessels and so greater hydraulic efficiency than the stem. Differences in the strength and stiffness of the tissue within the root system itself are thought to be an adaptation to the loading conditions experienced by the roots and to be related to differences in density. It is not known how potential mechanical adaptations may affect the hydraulic properties of the roots. The change in strength, stiffness, conductivity, density, sapwood area, and second moment of area distally along the lateral roots of two tropical tree species in which the strain is known to decrease rapidly was studied and the values were compared with those of the trunk. It was found that as the strain fell distally along the roots, so did the strength and stiffness of the tissue, whereas the conductivity increased exponentially. These changes appeared to be related to differences in density. In contrast to the distal-most roots, the tissue of the proximal roots had a lower conductivity and higher strength than that of the trunk. This suggests that mechanical requirements on the structure rather than the water potential gradient from roots to branches are responsible for the general pattern that roots have larger vessels than the stem. In spite of their increased transectional area, the buttressed proximal roots were subjected to higher levels of stress and had a lower total conductivity than the rest of the root system. © 2007 The Author(s). |
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AgroParisTech, LERFOB, Ecole Nationale du Genie Rural, des Eaux et Forêts, 14 Avenue Girardet-CS 4216, 54000 Nancy Cedex, France |
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00220957 (Issn) |
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Cited By (since 1996): 6; Export Date: 22 October 2011; Source: Scopus; Coden: Jeboa; doi: 10.1093/jxb/erm268; PubMed ID: 18039738; Language of Original Document: English; Correspondence Address: Christensen-Dalsgaard, K.K.; University of Manchester, Faculty of Life Sciences, Jackson's Mill, Manchester M60 1QD, United Kingdom; email: karen@cd-mail.dk; Chemicals/CAS: water, 7732-18-5; Water, 7732-18-5 |
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EcoFoG @ webmaster @ |
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353 |
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Marcon, E.; Herault, B.; Baraloto, C.; Lang, G. |
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The decomposition of Shannon's entropy and a confidence interval for beta diversity |
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Journal Article |
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2012 |
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Oikos |
Abbreviated Journal |
Oikos |
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121 |
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4 |
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516-522 |
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Beta diversity is among the most employed theoretical concepts in ecology and biodiversity conservation. Up to date, a self-contained definition of it, with no reference to alpha and gamma diversity, has never been proposed. Using Kullback-Leibler divergence, we present the explicit formula of Shannon's β entropy, a bias correction for its estimator and a confidence interval. We also provide the mathematical framework to decompose Shannon diversity into several hierarchical nested levels. From botanical inventories of tropical forest plots in French Guiana, we estimate Shannon diversity at the plot, forest and regional level. We believe this is a complete and usefulness toolbox for ecologists interested in partitioning biodiversity. © 2011 The Authors. Oikos © 2012 Nordic Society Oikos. |
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AgroParisTech, UMR 518 Math. Info. Appli., 16 rue Claude Bernard, FR-75005 Paris, France |
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00301299 (Issn) |
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Export Date: 28 March 2012; Source: Scopus; Coden: Oiksa; doi: 10.1111/j.1600-0706.2011.19267.x; Language of Original Document: English; Correspondence Address: Marcon, E.; AgroParisTech, UMR EcoFoG, BP 709, FR-97310 Kourou, France; email: eric.marcon@ecofog.gf |
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EcoFoG @ webmaster @ |
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386 |
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Marcon, E. |
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Entropy as a common measure of biodiversity and the spatial structure of economic activity |
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2019 |
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Revue Economique |
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Rev. Econ. |
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70 |
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3 |
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305-326 |
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Diversity; Economic geography; Spatial concentration; Specialization |
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Measures of spatial concentration and specialization in economics are similar to those of biodiversity and ubiquity of species in ecology. Entropy is the fundamental tool that originated in statistical physics and information theory. The definition of number equivalents or effective numbers, that is the number of types in an ideal, simplified distribution, is introduced along with the partitioning of the joint diversity of a bi-dimensional distribution into absolute and relative concentration or specialization and replication. The whole framework is theoretically robust and allows measuring the spatial structure of a discrete space. |
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AgroParisTech, UMR Écologie des forêts de Guyane, CNRS, Cirad, INRA, Université des Antilles, Université de Guyane, Campus Agronomique, BP 701, Kourou, 97310, French Guiana |
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Presses de Sciences Po |
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00352764 (Issn) |
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EcoFoG @ webmaster @ |
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912 |
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Audigeos, D.; Brousseau, L.; Traissac, S.; Scotti-Saintagne, C.; Scotti, I. |
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Molecular divergence in tropical tree populations occupying environmental mosaics |
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Journal Article |
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2013 |
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Journal of Evolutionary Biology |
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26 |
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3 |
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529-544 |
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Candidate genes; Drought; Eperua falcata; Flooding; Neotropics; Outlier loci; Tree genetics |
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Unveiling the genetic basis of local adaptation to environmental variation is a major goal in molecular ecology. In rugged landscapes characterized by environmental mosaics, living populations and communities can experience steep ecological gradients over very short geographical distances. In lowland tropical forests, interspecific divergence in edaphic specialization (for seasonally flooded bottomlands and seasonally dry terra firme soils) has been proven by ecological studies on adaptive traits. Some species are nevertheless capable of covering the entire span of the gradient; intraspecific variation for adaptation to contrasting conditions may explain the distribution of such ecological generalists. We investigated whether local divergence happens at small spatial scales in two stands of Eperua falcata (Fabaceae), a widespread tree species of the Guiana Shield. We investigated Single Nucleotide Polymorphisms (SNP) and sequence divergence as well as spatial genetic structure (SGS) at four genes putatively involved in stress response and three genes with unknown function. Significant genetic differentiation was observed among sub-populations within stands, and eight SNP loci showed patterns compatible with disruptive selection. SGS analysis showed genetic turnover along the gradients at three loci, and at least one haplotype was found to be in repulsion with one habitat. Taken together, these results suggest genetic differentiation at small spatial scale in spite of gene flow. We hypothesize that heterogeneous environments may cause molecular divergence, possibly associated to local adaptation in E. falcata. © 2012 European Society For Evolutionary Biology. |
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AgroParisTech-ENGREF, UMR 0745, EcoFoG ('Ecologie des forêts de Guyane'), Campus Agronomique, Kourou, French Guiana, France |
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Export Date: 28 February 2013; Source: Scopus |
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472 |
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Anouhe, J.-B.S.; Niamké, F.B.; Faustin, M.; Virieux, D.; Pirat, J.-L.; Adima, A.A.; Kati-Coulibaly, S.; Amusant, N. |
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The role of extractives in the natural durability of the heartwood of Dicorynia guianensis Amsh: new insights in antioxydant and antifungal properties |
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Journal Article |
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2018 |
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Annals of Forest Science |
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Annals of Forest Science |
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75 |
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1 |
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Alkaloid; Antifungal; Antioxidant; Dicorynia guianensis; Heartwood; Natural durability; Phenols |
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Key message: The natural durability of Dicorynia guianensis Amsh’s Heartwood is conferred by the high content of antioxidant phenolic compounds, especially tannins and flavonoids combined with the presence of fungistatic alkaloids. The content of phenolic compounds increases according to the natural durability classes, from durable wood (class 2) to moderately durable wood (class 3) and correlated to the antioxidant capacity.
Context: The heartwood of Dicorynia guianensis Amsh is resistant to white rot fungi decay, but the mechanism of this natural durability is not fully elucidated.
Aims: Biochemical studies were carried out in order to better understand the role of extractives in natural durability of D. guianensis.
Methods: The powders from durable and moderately durable heartwood were extracted with methanol, ethanol, and hot water. The quantity of total phenols, tannins, and flavonoids as well as antioxidant activity, evaluated by 2,2′-azino-bis-(3-ethylbenzothiazoline-6-sulfonic acid) were determined using colorimetric methods. Antifungal activity was assessed by using two white rot fungi. The bioactive fractions and compounds were obtained using bio-guided fractionation, HPLC isolation, MS and RMN spectroscopic analyses.
Results: Durable woods contain higher amounts of heartwood extract and antioxidant activity. Antioxidant activity was highly correlated with the content of phenolics. The purification of the most antioxidant fraction FII affords the characterization of (+)-catechin (−)-epicatechin, neoastilbin, astilbin, and isoastilbin. Alkaloid fraction FIII exhibits dose-dependent fungistatic activity against Pycnoporus sanguineus Linnaeus and Trametes versicolor Quelet.
Conclusion: Phenolic antioxidants and fungistatic alkaloids positively impact the natural durability of D. guianensis. |
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AM2N, Institut Charles Gerhardt, UMR 5253, ENSCM 8 rue de l’Ecole Normale, Montpellier, France |
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Export Date: 19 February 2018 |
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791 |
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Dejean, A.; Azémar, F.; Petitclerc, F.; Delabie, J.H.C.; Corbara, B.; Leroy, C.; Céréghino, R.; Compin, A. |
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Highly modular pattern in ant-plant interactions involving specialized and non-specialized myrmecophytes |
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2018 |
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Science of Nature |
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105 |
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43 |
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Ant-plant mutualism; Ecological network; Modularity; Myrmecophytes; Nestedness; Sympatric species |
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Because Tachia guianensis (Gentianaceae) is a “non-specialized myrmecophyte” associated with 37 ant species, we aimed to determine if its presence alters the ant guild associated with sympatric “specialized myrmecophytes” (i.e., plants sheltering a few ant species in hollow structures). The study was conducted in a hilly zone of a neotropical rainforest where two specialized myrmecophytes grow at the bottom of the slopes, another at mid-slope, and a fourth on the hilltops. Tachia guianensis, which occurred everywhere, had its own guild of associated ant species. A network analysis showed that its connections with the four other myrmecophytes were rare and weak, the whole resulting in a highly modular pattern of interactions with one module (i.e., subnetwork) per myrmecophyte. Three ant species parasitized three out of the four specialized myrmecophytes (low nestedness noted), but were not or barely associated with T. guianensis that therefore did not influence the parasitism of specialized myrmecophytes. © 2018, Springer-Verlag GmbH Germany, part of Springer Nature. |
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AMAP, IRD, CIRAD, CNRS, INRA, Université de Montpellier, Montpellier, France |
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Export Date: 1 September 2018 |
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815 |
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Carrias, J.-F.; Gerphagnon, M.; Rodríguez-Pérez, H.; Borrel, G.; Loiseau, C.; Corbara, B.; Céréghino, R.; Mary, I.; Leroy, C. |
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Resource availability drives bacterial succession during leaf-litter decomposition in a bromeliad ecosystem |
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2020 |
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FEMS microbiology ecology |
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FEMS Microbiol. Ecol. |
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96 |
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4 |
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fiaa045 |
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16S rRNA gene; amplicon sequencing; bacterial diversity; community ecology; decomposition; ecological succession |
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Despite the growing number of investigations on microbial succession during the last decade, most of our knowledge on primary succession of bacteria in natural environments comes from conceptual models and/or studies of chronosequences. Successional patterns of litter-degrading bacteria remain poorly documented, especially in undisturbed environments. Here we conducted an experiment with tank bromeliads as natural freshwater microcosms to assess major trends in bacterial succession on two leaf-litter species incubated with or without animal exclusion. We used amplicon sequencing and a co-occurrence network to assess changes in bacterial community structure according to treatments. Alpha-diversity and community complexity displayed the same trends regardless of the treatments, highlighting that primary succession of detrital-bacteria is subject to resource limitation and biological interactions, much like macro-organisms. Shifts in bacterial assemblages along the succession were characterized by an increase in uncharacterized taxa and potential N-fixing bacteria, the latter being involved in positive co-occurrence between taxa. These findings support the hypothesis of interdependence between taxa as a significant niche-based process shaping bacterial communities during the advanced stage of succession. © FEMS 2020. |
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AMAP, IRD, CIRAD, CNRS, INRA, Université Montpellier, Montpellier, France |
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NLM (Medline) |
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Export Date: 14 April 2020 |
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EcoFoG @ webmaster @ |
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