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Latouche-Hallé, C.; Ramboer, A.; Bandou, E.; Caron, H.; Kremer, A. |
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Nuclear and chloroplast genetic structure indicate fine-scale spatial dynamics in a neotropical tree population |
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Journal Article |
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2003 |
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Heredity |
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Heredity |
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91 |
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2 |
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181-190 |
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Dicorynia guianensis; Gene flow; Genetic differentiation; Microsatellites; Spatial analysis; Tropical tree; gene flow; genetic structure; population genetics; spatial analysis; tree; tropical forest; Cell Nucleus; Chloroplasts; Cohort Studies; DNA, Plant; French Guiana; Genetic Markers; Pollen; Population Dynamics; Seeds; Trees; Variation (Genetics); French Guiana; Dicorynia guianensis; Embryophyta |
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Dicorynia guianensis is a canopy tree, endemic to the tropical rain forest of French Guiana. We compared generational and spatial genetic structure for maternally and biparentally inherited markers in two cohorts (adult and seedling) in order to infer processes shaping the distribution of genetic diversity. The study was conducted on a 40 ha study plot located at Paracou near Kourou, where 172 adults trees and 375 saplings were sampled. Aggregation of trees was therefore suggested at different distances, ranging from 100 to 400 m. There was a strong link between demographic and genetic spatial structures at small distances (less than 100 m) that is likely to be the consequence of restricted seed dispersal. Genetic differentiation was more pronounced between spatial aggregates than between cohorts. Despite the spatial differentiation, the species was able to maintain high levels of diversity for maternal genomes, suggesting rapid turnover of aggregates. Spatial autocorrelation was larger for chloroplast than nuclear markers indicating a strong asymmetry between pollen and seed flow. Fixation indices indicated a lower heterozygote deficiency for the adults, maybe because of gradual elimination of selfed trees. Genetic relatedness at lower distances was higher in adult trees than in saplings, as a result of generation overlapping in the adult cohort. Overall, our results confirm earlier biological knowledge about the dispersion mechanisms of the species, and lead to an enhanced role of spatial processes in the dynamics of genetic diversity of D. guianensis. |
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INRA Lab. Genet. Arbres Forestiers, BP45, 33611 Gazinet Cedex, France |
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0018067x (Issn) |
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Cited By (since 1996): 34; Export Date: 22 October 2011; Source: Scopus; Coden: Hdtya; doi: 10.1038/sj.hdy.6800296; PubMed ID: 12886285; Language of Original Document: English; Correspondence Address: Caron, H.; INRA Lab. Genet. Arbres Forestiers, BP45, 33611 Gazinet Cedex, France; email: caron@pierroton.inra.fr; Chemicals/CAS: DNA, Plant; Genetic Markers |
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EcoFoG @ webmaster @ |
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358 |
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Ziegler, C.; Dusenge, M.E.; Nyirambangutse, B.; Zibera, E.; Wallin, G.; Uddling, J. |
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Title |
Contrasting Dependencies of Photosynthetic Capacity on Leaf Nitrogen in Early- and Late-Successional Tropical Montane Tree Species |
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Journal Article |
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2020 |
Publication |
Frontiers in Plant Science |
Abbreviated Journal |
Front. Plant Sci. |
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11 |
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500479 |
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allocation; early successional; late successional; nitrogen; photosynthesis; tropical montane forests |
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Differences in photosynthetic capacity among tree species and tree functional types are currently assumed to be largely driven by variation in leaf nutrient content, particularly nitrogen (N). However, recent studies indicate that leaf N content is often a poor predictor of variation in photosynthetic capacity in tropical trees. In this study, we explored the relative importance of area-based total leaf N content (Ntot) and within-leaf N allocation to photosynthetic capacity versus light-harvesting in controlling the variation in photosynthetic capacity (i.e. Vcmax, Jmax) among mature trees of 12 species belonging to either early (ES) or late successional (LS) groups growing in a tropical montane rainforest in Rwanda, Central Africa. Photosynthetic capacity at a common leaf temperature of 25˚C (i.e. maximum rates of Rubisco carboxylation, Vcmax25 and of electron transport, Jmax25) was higher in ES than in LS species (+ 58% and 68% for Vcmax25 and Jmax25, respectively). While Ntot did not significantly differ between successional groups, the photosynthetic dependency on Ntot was markedly different. In ES species, Vcmax25 was strongly and positively related to Ntot but this was not the case in LS species. However, there was no significant trade-off between relative leaf N investments in compounds maximizing photosynthetic capacity versus compounds maximizing light harvesting. Both leaf dark respiration at 25˚C (+ 33%) and, more surprisingly, apparent photosynthetic quantum yield (+ 35%) was higher in ES than in LS species. Moreover, Rd25 was positively related to Ntot for both ES and LS species. Our results imply that efforts to quantify carbon fluxes of tropical montane rainforests would be improved if they considered contrasting within-leaf N allocation and photosynthetic Ntot dependencies between species with different successional strategies. © Copyright © 2020 Ziegler, Dusenge, Nyirambangutse, Zibera, Wallin and Uddling. |
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Department of Biology, The University of Western Ontario, London, ON, Canada |
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Frontiers Media S.A. |
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1664462x (Issn) |
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EcoFoG @ webmaster @ |
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953 |
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Laurans, M.; Herault, B.; Vieilledent, G.; Vincent, G. |
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Title |
Vertical stratification reduces competition for light in dense tropical forests |
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Journal Article |
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2014 |
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Forest Ecology and Management |
Abbreviated Journal |
For. Ecol. Manage. |
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329 |
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79-88 |
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Adult stature; French Guiana; Hierarchical bayesian model; Local crowding; Niche partitioning; Bayesian networks; Growth rate; Adult stature; French Guiana; Hierarchical Bayesian modeling; Local crowding; Niche partitioning; Reforestation |
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Differential growth response to light level is widely accepted as a potential mechanism for maintaining tree species richness in tropical forests. The position of tree species in the hierarchy of the canopy is considered an important indicator of species light capture and growth strategy. Paradoxically, the relative importance of species identity and competition for light in determining individual tree growth is poorly documented at the adult stage. In this study, we used a hierarchical Bayesian model to quantify the overall importance of species identity, light and belowground competition as determinants of tree growth in French Guiana tropical forest. Light competitive status is assessed by a crown exposure score and below ground competition is estimated from local crowding. We examined species sensitivity to both types of competition in relation to adult stature. Our results are based on annual diameter increments of more than 13,510 stems from 282 species monitored over 10years. Mean annual growth rate was 0.11cmy-1 with species identity explaining 35% of the individual variation in growth rate. Crown exposure and local crowding explained 3.5% and 2.4% of the variation in growth rate, respectively. Predicted changes in growth rate as crown exposure (resp. local crowding) index changed from lower to upper interquartile level was 0.03cmy-1 (resp. 0.02cmy-1). Species sensitivity to crown exposure and to local crowding were positively correlated (i) with predicted growth rate at high-light standardized conditions and (ii) with adult stature.This vertical niche partitioning is invoked to explain the limited contribution made by level of light competition for predicting individual tropical tree growth as the community-level response is dominated by the abundance of small-statured species with low sensitivity to light level.Light appears to drive the stem growth rate of tropical trees through species differentiation more than through individual tree growth limitation. This vertical stratification complements the previously reported regeneration niche and together these provide evidence for light niche partitioning in the three-dimensional space of tropical forests. © 2014 Elsevier B.V. |
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IRD, UMR AMAP, TA A-51/PS1, Bd de la Lironde, 34398 Montpellier Cedex 5, France |
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Elsevier |
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03781127 (Issn) |
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Export Date: 30 July 2014; Coden: Fecmd; Correspondence Address: Laurans, M.; CIRAD, UMR AMAP, TA A-51/PS1, Bd de la Lironde, 34398 Montpellier Cedex 5, France; email: laurans@cirad.fr |
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EcoFoG @ webmaster @ |
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551 |
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Honorio Coronado, E.N.; Blanc-Jolivet, C.; Mader, M.; García-Dávila, C.R.; Gomero, D.A.; del Castillo Torres, D.; Llampazo, G.F.; Pizango, G.H.; Sebbenn, A.M.; Meyer-Sand, B.R.V.; Paredes-Villanueva, K.; Tysklind, N.; Troispoux, V.; Massot, M.; Carvalho, C.; de Lima, H.C.; Cardoso, D.; Degen, B. |
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Title |
SNP markers as a successful molecular tool for assessing species identity and geographic origin of trees in the economically important South American legume genus Dipteryx |
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Journal Article |
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2020 |
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Journal of Heredity |
Abbreviated Journal |
J. Hered. |
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111 |
Issue |
4 |
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346-356 |
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Cumaru; Genetic assignment; Leguminosae; Timber verification; article; chloroplast; genetic association; genetic marker; geographic origin; indel mutation; nonhuman; single nucleotide polymorphism; species identification; structure analysis; tonka bean; Dipteryx; Fabaceae |
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Dipteryx timber has been heavily exploited in South America since 2000s due to the increasing international demand for hardwood. Developing tools for the genetic identification of Dipteryx species and their geographical origin can help to promote legal trading of timber. A collection of 800 individual trees, belonging to 6 different Dipteryx species, was genotyped based on 171 molecular markers. After the exclusion of markers out of Hardy-Weinberg equilibrium or with no polymorphism or low amplification, 83 nuclear, 29 chloroplast, 13 mitochondrial single nucleotide polymorphisms (SNPs), and 2 chloroplast and 5 mitochondrial INDELS remained. Six genetic groups were identified using Bayesian Structure analyses of the nuclear SNPs, which corresponded to the different Dipteryx species collected in the field. Seventeen highly informative markers were identified as suitable for species identification and obtained self-assignment success rates to species level of 78-96%. An additional set of 15 molecular markers was selected to determine the different genetic clusters found in Dipteryx odorata and Dipteryx ferrea, obtaining self-assignment success rates of 91-100%. The success to assign samples to the correct country of origin using all or only the informative markers improved when using the nearest neighbor approach (69-92%) compared to the Bayesian approach (33-80%). While nuclear and chloroplast SNPs were more suitable for differentiating the different Dipteryx species, mitochondrial SNPs were ideal for determining the genetic clusters of D. odorata and D. ferrea. These 32 selected SNPs will be invaluable genetic tools for the accurate identification of species and country of origin of Dipteryx timber. © The American Genetic Association 2020. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com |
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Instituto de Biologia, Universidade Federal da Bahia, Rua Barão de Jeremoabo, s.n., Ondina, Salvador, BA, 40170-115, Brazil |
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Oxford University Press |
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00221503 (Issn) |
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EcoFoG @ webmaster @ |
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965 |
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Prevost-Boure, N.C.; Ngao, J.; Berveiller, D.; Bonal, D.; Damesin, C.; Dufrene, E.; Lata, J.C.; Le Dantec, V.; Longdoz, B.; Ponton, S.; Soudani, K.; Epron, D. |
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Root exclusion through trenching does not affect the isotopic composition of soil CO2 efflux |
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Journal Article |
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2009 |
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Plant and Soil |
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Plant Soil |
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319 |
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1-2 |
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1-13 |
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Stable carbon isotopes; Natural abundance; Soil respiration; Trenched plot; Rainforest; Temperate forest |
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Disentangling the autotrophic and heterotrophic components of soil CO2 efflux is critical to understanding the role of soil system in terrestrial carbon (C) cycling. In this study, we combined a stable C-isotope natural abundance approach with the trenched plot method to determine if root exclusion significantly affected the isotopic composition (delta C-13) of soil CO2 efflux (R-S). This study was performed in different forest ecosystems: a tropical rainforest and two temperate broadleaved forests, where trenched plots had previously been installed. At each site, R-S and its delta C-13 (delta C-13(Rs)) tended to be lower in trenched plots than in control plots. Contrary to R-S, delta C-13(Rs) differences were not significant. This observation is consistent with the small differences in delta C-13 measured on organic matter from root, litter and soil. The lack of an effect on delta C-13(Rs) by root exclusion could be from the small difference in delta C-13 between autotrophic and heterotrophic soil respirations, but further investigations are needed because of potential artefacts associated with the root exclusion technique. |
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[Prevost-Boure, Nicolas Chemidlin; Berveiller, Daniel; Damesin, Claire; Dufrene, Eric; Lata, Jean-Christophe; Soudani, Kamel] Univ Paris Sud, Lab Ecol Systemat & Evolut, AgroParisTech, CNRS,UMR 8079, F-75231 Paris, France, Email: nicolas.chemidlin-prevost-boure@u-psud.fr |
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SPRINGER |
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0032-079X |
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ISI:000266143400001 |
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EcoFoG @ eric.marcon @ |
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203 |
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Fouquet, A.; Ledoux, J.-B.; Dubut, V.; Noonan, B.P.; Scotti, I. |
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The interplay of dispersal limitation, rivers, and historical events shapes the genetic structure of an Amazonian frog |
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2012 |
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Biological Journal of the Linnean Society |
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Biol. J. Linn. Soc. |
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106 |
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2 |
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356-373 |
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Amazonia; Amphibian; Gene flow; Microsatellites; Mitochondrial DNA; Spatial genetic structure |
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Disentangling the impact of landscape features such as rivers and historical events on dispersal is a challenging but necessary task to gain a comprehensive picture of the evolution of diverse biota such as that found in Amazonia. Adenomera andreae, a small, territorial, terrestrial frog species of the Amazonian forest represents a good model for such studies. We combined cytochromeb sequences with 12 microsatellites to investigate the genetic structure at two contrasted spatial scales in French Guiana: along a ∼6-km transect, to evaluate dispersal ability, and between paired bank populations along a ∼65-km stretch of the Approuague river, to test the effect of rivers as barriers to dispersal. We observed significant spatial genetic structure between individuals at a remarkably small geographical scale, and conclude that the species has a restricted dispersal ability that is probably tied to its life-history traits. Mitochondrial and microsatellite data also indicate a high level of differentiation among populations on opposite banks of the river, and, in some cases, among populations on the same riverbank. These results suggest that the observed population structure in A.andreae is the result of restricted dispersal abilities combined with the action of rivers and Quaternary population isolation. Given that Amazonia hosts a great portion of anurans, as well as other small vertebrates, that display life-history traits comparable with A.andreae, we argue that our analyses provide new insights into the complex interactions among evolutionary processes shaping Amazonian biodiversity. © 2012 The Linnean Society of London. |
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INRA, UMR ECOFOG, Campus agronomique, Avenue de France, BP 709, 97387 Kourou, French Guiana, France |
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00244066 (Issn) |
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Export Date: 2 May 2012; Source: Scopus; Coden: Bjlsb; doi: 10.1111/j.1095-8312.2012.01871.x; Language of Original Document: English; Correspondence Address: Fouquet, A.; Departamento de Zoologia, Instituto de Biociências, Universidade de São Paulo, Caixa Postal 11461, CEP 05422-970, São Paulo, Brazil; email: fouquet.antoine@gmail.com |
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EcoFoG @ webmaster @ |
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397 |
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Bastias, C.C.; Fortunel, C.; Valladares, F.; Baraloto, C.; Benavides, R.; Cornwell, W.; Markesteijn, L.; De Oliveira, A.A.; Sansevero, J.B.B.; Vaz, M.C.; Kraft, N.J.B. |
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Intraspecific leaf trait variability along a boreal-to-tropical community diversity gradient |
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2017 |
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PLoS ONE |
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PLoS ONE |
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12 |
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2 |
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e0172495 |
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Disentangling the mechanisms that shape community assembly across diversity gradients is a central matter in ecology. While many studies have explored community assembly through species average trait values, there is a growing understanding that intraspecific trait variation (ITV) can also play a critical role in species coexistence. Classic biodiversity theory hypothesizes that higher diversity at species-rich sites can arise from narrower niches relative to species-poor sites, which would be reflected in reduced ITV as species richness increases. To explore how ITV in woody plant communities changes with species richness, we compiled leaf trait data (leaf size and specific leaf area) in a total of 521 woody plant species from 21 forest communities that differed dramatically in species richness, ranging from boreal to tropical rainforests. At each forest, we assessed ITV as an estimate of species niche breadth and we quantified the degree of trait overlap among co-occurring species as a measure of species functional similarity. We found ITV was relatively invariant across the species richness gradient. In addition, we found that species functional similarity increased with diversity. Contrary to the expectation from classic biodiversity theory, our results rather suggest that neutral processes or equalizing mechanisms can be acting as potential drivers shaping community assembly in hyperdiverse forests. © This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication. |
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Universidade Federal Rural do Rio de Janeiro-UFRRJ, Departamento de Ciencias Ambientais-DCA, Instituto de Florestas, Seropédica, Rio de Janeiro, Brazil |
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Export Date: 13 March 2017 |
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EcoFoG @ webmaster @ |
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744 |
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Morel-Journel, T.; Piponiot, C.; Vercken, E.; Mailleret, L. |
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Evidence for an optimal level of connectivity for establishment and colonization |
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2016 |
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Biology Letters |
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Biol Lett |
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12 |
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11 |
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20160704 |
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Dispersal is usually associated with the spread of invasive species, but it also has two opposing effects, one decreasing and the other increasing the probability of establishment. Indeed, dispersal both slows population growth at the site of introduction and increases the likelihood of surrounding habitat being colonized. The connectivity of the introduction site is likely to affect dispersal, and, thus, establishment, according to the dispersal behaviour of individuals. Using individual-based models and microcosm experiments on minute wasps, we demonstrated the existence of a hump-shaped relationship between connectivity and establishment in situations in which individual dispersal resembled a diffusion process. These results suggest that there is an optimal level of connectivity for the establishment of introduced populations locally at the site of introduction, and regionally over the whole landscape. |
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EcoFoG @ webmaster @ |
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722 |
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Hattenschwiler, S.; Aeschlimann, B.; Couteaux, M.M.; Roy, J.; Bonal, D. |
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High variation in foliage and leaf litter chemistry among 45 tree species of a neotropical rainforest community |
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2008 |
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New Phytologist |
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New Phytol. |
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179 |
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1 |
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165-175 |
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French Guiana; interspecific and intraspecific variation; leaf litter traits; neotropical rainforest; nitrogen; nutrient resorption; phosphorus; stoichiometry |
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Distinct ecosystem level carbon : nitrogen : phosphorus (C : N : P) stoichiometries in forest foliage have been suggested to reflect ecosystem-scale selection for physiological strategies in plant nutrient use. Here, this hypothesis was explored in a nutrient-poor lowland rainforest in French Guiana. Variation in C, N and P concentrations was evaluated in leaf litter and foliage from neighbour trees of 45 different species, and the litter concentrations of major C fractions were also measured. Litter C ranged from 45.3 to 52.4%, litter N varied threefold (0.68-2.01%), and litter P varied seven-fold (0.009-0.062%) among species. Compared with foliage, mean litter N and P concentrations decreased by 30% and 65%, respectively. Accordingly, the range in mass-based N : P shifted from 14 to 55 in foliage to 26 to 105 in litter. Resorption proficiencies indicated maximum P withdrawal in most species, but with a substantial increase in variation in litter P compared with foliage. These data suggest that constrained ecosystem-level C : N : P ratios do not preclude the evolution of highly diversified strategies of nutrient use and conservation among tropical rainforest tree species. The resulting large variation in litter quality will influence stoichiometric constraints within the decomposer food web, with potentially far-ranging consequences on nutrient dynamics and plant-soil feedbacks. |
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[Haettenschwiler, Stephan; Aeschlimann, Beat; Couteaux, Marie-Madeleine; Roy, Jacques] CEFE, CNRS, F-34293 Montpellier 5, France, Email: stephan.hattenschwiler@cefe.cnrs.fr |
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BLACKWELL PUBLISHING |
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ISI:000256412500017 |
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EcoFoG @ eric.marcon @ |
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Guitet, S.; Sabatier, D.; Brunaux, O.; Couteron, P.; Denis, T.; Freycon, V.; Gonzalez, S.; Hérault, B.; Jaouen, G.; Molino, J.-F.; Pélissier, R.; Richard-Hansen, C.; Vincent, G. |
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Disturbance Regimes Drive the Diversity of Regional Floristic Pools Across Guianan Rainforest Landscapes |
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2018 |
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Scientific Reports |
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Sci. Rep. |
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8 |
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3872 |
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Disturbances control rainforest dynamics, and, according to the intermediate disturbance hypothesis (IDH), disturbance regime is a key driver of local diversity. Variations in disturbance regimes and their consequences on regional diversity at broad spatiotemporal scales are still poorly understood. Using multidisciplinary large-scale inventories and LiDAR acquisitions, we developed a robust indicator of disturbance regimes based on the frequency of a few early successional and widely distributed pioneer species. We demonstrate at the landscape scale that tree-species diversity and disturbance regimes vary with climate and relief. Significant relationships between the disturbance indicator, tree-species diversity and soil phosphorus content agree with the hypothesis that rainforest diversity is controlled both by disturbance regimes and long-term ecosystem stability. These effects explain the broad-scale patterns of floristic diversity observed between landscapes. In fact, species-rich forests in highlands, which have benefited from long-term stability combined with a moderate and regular regime of local disturbances, contrast with less diversified forests on recently shaped lowlands, which have undergone more recent changes and irregular dynamics. These results suggest that taking the current disturbance regime into account and including geomorphological stratifications in climate-vegetation models may be an effective way to improve the prediction of changes in species diversity under climate change. © 2018 The Author(s). |
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AgroParisTech, EcoFoG, Kourou, French Guiana |
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Export Date: 21 March 2018 |
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