| Records |
| Author |
Van Langenhove, L.; Depaepe, T.; Vicca, S.; van den Berge, J.; Stahl, C.; Courtois, E.; Weedon, J.; Urbina, I.; Grau, O.; Asensio, D.; Peñuelas, J.; Boeckx, P.; Richter, A.; Van Der Straeten, D.; Janssens, I.A. |
| Title |
Regulation of nitrogen fixation from free-living organisms in soil and leaf litter of two tropical forests of the Guiana shield |
Type |
Journal Article |
| Year |
2019 |
Publication |
Plant and Soil |
Abbreviated Journal  |
Plant Soil |
| Volume |
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Issue |
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Pages |
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| Keywords |
Free-living nitrogen fixation; French Guiana; Molybdenum; Nutrients; Phosphorus; Tropical forest |
| Abstract |
Background and aims: Biological fixation of atmospheric nitrogen (N 2 ) is the main pathway for introducing N into unmanaged ecosystems. While recent estimates suggest that free-living N fixation (FLNF) accounts for the majority of N fixed in mature tropical forests, the controls governing this process are not completely understood. The aim of this study was to quantify FLNF rates and determine its drivers in two tropical pristine forests of French Guiana. Methods: We used the acetylene reduction assay to measure FLNF rates at two sites, in two seasons and along three topographical positions, and used regression analyses to identify which edaphic explanatory variables, including carbon (C), nitrogen (N), phosphorus (P) and molybdenum (Mo) content, pH, water and available N and P, explained most of the variation in FLNF rates. Results: Overall, FLNF rates were lower than measured in tropical systems elsewhere. In soils seasonal variability was small and FLNF rates differed among topographies at only one site. Water, P and pH explained 24% of the variation. In leaf litter, FLNF rates differed seasonally, without site or topographical differences. Water, C, N and P explained 46% of the observed variation. We found no regulatory role of Mo at our sites. Conclusions: Rates of FLNF were low in primary rainforest on poor soils on the Guiana shield. Water was the most important rate-regulating factor and FLNF increased with increasing P, but decreased with increasing N. Our results support the general assumption that N fixation in tropical lowland forests is limited by P availability. © 2019, The Author(s). |
| Address |
Department of Microbiology and Ecosystem Science, University of Vienna, Althanstr. 14, Vienna, 1090, Austria |
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| Publisher |
Springer International Publishing |
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0032079x (Issn) |
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no |
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EcoFoG @ webmaster @ |
Serial |
868 |
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| Author |
Van Langenhove, L.; Depaepe, T.; Vicca, S.; van den Berge, J.; Stahl, C.; Courtois, E.; Weedon, J.; Urbina, I.; Grau, O.; Asensio, D.; Peñuelas, J.; Boeckx, P.; Richter, A.; Van Der Straeten, D.; Janssens, I.A. |
| Title |
Regulation of nitrogen fixation from free-living organisms in soil and leaf litter of two tropical forests of the Guiana shield |
Type |
Journal Article |
| Year |
2020 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
| Volume |
450 |
Issue |
1-2 |
Pages |
93-110 |
| Keywords |
Free-living nitrogen fixation; French Guiana; Molybdenum; Nutrients; Phosphorus; Tropical forest; acetylene; leaf litter; molybdenum; nitrogen fixation; nutrient cycling; phosphorus; rainforest; reduction; soil biota; soil carbon; soil nitrogen; soil water; topographic effect; tropical forest; French Guiana |
| Abstract |
Background and aims: Biological fixation of atmospheric nitrogen (N2) is the main pathway for introducing N into unmanaged ecosystems. While recent estimates suggest that free-living N fixation (FLNF) accounts for the majority of N fixed in mature tropical forests, the controls governing this process are not completely understood. The aim of this study was to quantify FLNF rates and determine its drivers in two tropical pristine forests of French Guiana. Methods: We used the acetylene reduction assay to measure FLNF rates at two sites, in two seasons and along three topographical positions, and used regression analyses to identify which edaphic explanatory variables, including carbon (C), nitrogen (N), phosphorus (P) and molybdenum (Mo) content, pH, water and available N and P, explained most of the variation in FLNF rates. Results: Overall, FLNF rates were lower than measured in tropical systems elsewhere. In soils seasonal variability was small and FLNF rates differed among topographies at only one site. Water, P and pH explained 24% of the variation. In leaf litter, FLNF rates differed seasonally, without site or topographical differences. Water, C, N and P explained 46% of the observed variation. We found no regulatory role of Mo at our sites. Conclusions: Rates of FLNF were low in primary rainforest on poor soils on the Guiana shield. Water was the most important rate-regulating factor and FLNF increased with increasing P, but decreased with increasing N. Our results support the general assumption that N fixation in tropical lowland forests is limited by P availability. © 2019, The Author(s). |
| Address |
Department of Microbiology and Ecosystem Science, University of Vienna, Althanstr. 14, Vienna, 1090, Austria |
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Springer |
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0032079x (Issn) |
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no |
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EcoFoG @ webmaster @ |
Serial |
971 |
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| Author |
Urbina, I.; Grau, O.; Sardans, J.; Ninot, J.M.; Peñuelas, J. |
| Title |
Encroachment of shrubs into subalpine grasslands in the Pyrenees changes the plant-soil stoichiometry spectrum |
Type |
Journal Article |
| Year |
2020 |
Publication |
Plant and Soil |
Abbreviated Journal |
Plant Soil |
| Volume |
448 |
Issue |
1-2 |
Pages |
37-53 |
| Keywords |
Nutrient stocks; Plant strategy; Plant-soil stoichiometry; Shrub encroachment; Subalpine grassland succession; aboveground biomass; biogeochemical cycle; carbon sequestration; ectomycorrhiza; fungus; grass; nitrogen; nutrient uptake; shrub; soil-vegetation interaction; stoichiometry; subalpine environment; succession; Europe; Pyrenees; Fungi |
| Abstract |
Aims: Shrub encroachment has been reported over a large proportion of the subalpine grasslands across Europe and is expected to have an important impact on the biogeochemical cycle of these ecosystems. We investigated the stoichiometric changes in the plant-soil system along the succession (e.g. increase in encroachment from unencroached grassland to mature shrubland) at two contrasting sites in the Pyrenees. Methods: We analyzed the chemical composition (C, N,15N, P, K, Ca, Mg and Fe) in the soil and in the aboveground plant compartments (leaves, leaf-litter and stems) of the main herbaceous species and shrubs at three contrasting stages of the succession: unencroached grassland, young shrubland and mature shrubland. Results: The plant-soil stoichiometry spectrum differed between the successional stages. Shrub encroachment generally increased the concentration of C and Ca and the C:N ratio and often reduced to concentrations of N, P and K in the leaves and leaf-litter, while several soil nutrient concentrations (N, P, K Ca and Mg) decreased. The stocks of C, N, P, Ca, and Mg in the total aboveground biomass increased with encroachment. Conclusions: Shrub encroachment favored the dominance of long-lived species with low concentrations of N and P in the plant-soil compartments, high C:nutrient ratios in the aboveground biomass and increase the uptake of N through ericoid or ectomycorrhizal fungi. We highlight the role of shrubs in the sequestration of C and nutrients through the allocation to the aboveground biomass. The changes in plant-soil elemental composition and stocks suggest a slowdown of the biogeochemical cycles in the subalpine mountain areas where shrub encroachment occurred. © 2020, Springer Nature Switzerland AG. |
| Address |
Biodiversity Research Institute (IRBio) and Department of Evolutionary Biology, Ecology and Environmental Sciences, University of Barcelona, Barcelona, Catalonia, Spain |
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Springer |
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0032079x (Issn) |
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no |
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EcoFoG @ webmaster @ |
Serial |
983 |
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| Author |
Vedel, V.; Scotti, I. |
| Title |
Promoting the promoter |
Type |
Journal Article |
| Year |
2011 |
Publication |
Plant Science |
Abbreviated Journal |
Plant Sci. |
| Volume |
180 |
Issue |
2 |
Pages |
182-189 |
| Keywords |
cis-Regulation; Evolutionary and developmental biology; Integrative evolution; Plant development; Population genetics; Transcription |
| Abstract |
Recent evolutionary studies clearly indicate that evolution is mainly driven by changes in the complex mechanisms of gene regulation and not solely by polymorphism in protein-encoding genes themselves. After a short description of the cis-regulatory mechanism, we intend in this review to argue that by applying newly available technologies and by merging research areas such as evolutionary and developmental biology, population genetics, ecology and molecular cell biology it is now possible to study evolution in an integrative way. We contend that, by analysing the effects of promoter sequence variation on phenotypic diversity in natural populations, we will soon be able to break the barrier between the study of extant genetic variability and the study of major developmental changes. This will lead to an integrative view of evolution at different scales. Because of their sessile nature and their continuous development, plants must permanently regulate their gene expression to react to their environment, and can, therefore, be considered as a remarkable model for these types of studies. (C) 2010 Elsevier Ireland Ltd. All rights reserved. |
| Address |
[Vedel, Vincent; Scotti, Ivan] INRA, UMR ECOFOG, Kourou 97387, French Guiana, Email: vincent.vedel@ecofog.gf |
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| Publisher |
ELSEVIER IRELAND LTD |
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Edition |
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| ISSN |
0168-9452 |
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| Notes |
ISI:000286562200002 |
Approved |
no |
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EcoFoG @ eric.marcon @ |
Serial |
291 |
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| Author |
Michalet, S.; Rohr, J.; Warshan, D.; Bardon, C.; Roggy, J.-C.; Domenach, A.-M.; Czarnes, S.; Pommier, T.; Combourieu, B.; Guillaumaud, N.; Bellvert, F.; Comte, G.; Poly, F. |
| Title |
Phytochemical analysis of mature tree root exudates in situ and their role in shaping soil microbial communities in relation to tree N-acquisition strategy |
Type |
Journal Article |
| Year |
2013 |
Publication |
Plant Physiology and Biochemistry |
Abbreviated Journal |
Plant Physiol. Biochem. |
| Volume |
72 |
Issue |
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Pages |
169-177 |
| Keywords |
Chemical ecology; Denitrification; Eperua falcata; Metabolic profiling; Mycorrhizae; Plant-microbes interactions; Root exudates |
| Abstract |
Eperua falcata (Aublet), a late-successional species in tropical rainforest and one of the most abundant tree in French Guiana, has developed an original strategy concerning N-acquisition by largely preferring nitrate, rather than ammonium (H. Schimann, S. Ponton, S. Hättenschwiler, B. Ferry, R. Lensi, A.M. Domenach, J.C. Roggy, Differing nitrogen use strategies of two tropical rainforest tree species in French Guiana: evidence from 15N natural abundance and microbial activities, Soil Biol. Biochem. 40 (2008) 487-494). Given the preference of this species for nitrate, we hypothesized that root exudates would promote nitrate availability by (a) enhancing nitrate production by stimulating ammonium oxidation or (b) minimizing nitrate losses by inhibiting denitrification.Root exudates were collected in situ in monospecific planted plots. The phytochemical analysis of these exudates and of several of their corresponding root extracts was achieved using UHPLC/DAD/ESI-QTOF and allowed the identification of diverse secondary metabolites belonging to the flavonoid family.Our results show that (i) the distinct exudation patterns observed are related to distinct root morphologies, and this was associated with a shift in the root flavonoid content, (ii) a root extract representative of the diverse compounds detected in roots showed a significant and selective metabolic inhibition of isolated denitrifiers invitro, and (iii) in soil plots the abundance of nirK-type denitrifiers was negatively affected in rhizosphere soil compared to bulk. Altogether this led us to formulate hypothesis concerning the ecological role of the identified compounds in relation to N-acquisition strategy of this species. © 2013 Elsevier Masson SAS. |
| Address |
SOLICAZ, c/o Guyane Technopole 16 bis rue du 14 Juillet, 97300 Cayenne, French Guiana |
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Edition |
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| ISSN |
09819428 (Issn) |
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| Notes |
Export Date: 15 November 2013; Source: Scopus; Coden: Ppbie; doi: 10.1016/j.plaphy.2013.05.003; Language of Original Document: English; Correspondence Address: Michalet, S.; Université Lyon1, CNRS, UMR5557, INRA, USC1364, Ecologie Microbienne, Centre d'Etude des Substances Naturelles, Pavillon Nétien, ISPB, 8 Avenue Rockefeller, 69373 Lyon cedex, France; email: sergemichalet@yahoo.fr |
Approved |
no |
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EcoFoG @ webmaster @ |
Serial |
509 |
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| Author |
Coutand, C.; Fournier, M.; Moulia, B. |
| Title |
The gravitropic response of poplar trunks: Key roles of prestressed wood regulation and the relative kinetics of cambial growth versus wood maturation |
Type |
Journal Article |
| Year |
2007 |
Publication |
Plant Physiology |
Abbreviated Journal |
Plant Physiol. |
| Volume |
144 |
Issue |
2 |
Pages |
1166-1180 |
| Keywords |
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| Abstract |
In tree trunks, the motor of gravitropism involves radial growth and differentiation of reaction wood (Archer, 1986). The first aim of this study was to quantify the kinematics of gravitropic response in young poplar (Populus nigra x Populus deltoides, 'I4551') by measuring the kinematics of curvature fields along trunks. Three phases were identified, including latency, upward curving, and an anticipative autotropic decurving, which has been overlooked in research on trees. The biological and mechanical bases of these processes were investigated by assessing the biomechanical model of Fournier et al. (1994). Its application at two different time spans of integration made it possible to test hypotheses on maturation, separating the effects of radial growth and cross section size from those of wood prestressing. A significant correlation between trunk curvature and Fournier's model integrated over the growing season was found, but only explained 32% of the total variance. Moreover, over a week's time period, the model failed due to a clear out phasing of the kinetics of radial growth and curvature that the model does not take into account. This demonstrates a key role of the relative kinetics of radial growth and the maturation process during gravitropism. Moreover, the degree of maturation strains appears to differ in the tension woods produced during the upward curving and decurving phases. Cell wall maturation seems to be regulated to achieve control over the degree of prestressing of tension wood, providing effective control of trunk shape. |
| Address |
Univ Clermont Ferrand, Inst Natl Recherche Agronom, Physiol Integree Arbre Fruitier, Unite Mixte Recherche 547, F-63100 Clermont Ferrand, France, Email: coutand@clermont.inra.fr |
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| Publisher |
AMER SOC PLANT BIOLOGISTS |
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0032-0889 |
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| Notes |
ISI:000247075000055 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
162 |
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Heuertz, M.; Caron, H.; Scotti-Saintagne, C.; Pétronelli, P.; Engel, J.; Tysklind, N.; Miloudi, S.; Gaiotto, F.A.; Chave, J.; Molino, J.-F.; Sabatier, D.; Loureiro, J.; Budde, K.B. |
| Title |
The hyperdominant tropical tree Eschweilera coriacea (Lecythidaceae) shows higher genetic heterogeneity than sympatric Eschweilera species in French Guiana |
Type |
Journal Article |
| Year |
2020 |
Publication |
Plant Ecology and Evolution |
Abbreviated Journal |
Plant Ecol. Evol. |
| Volume |
153 |
Issue |
1 |
Pages |
67-81 |
| Keywords |
Cryptic species; Eschweilera; Hyperdominant tropical trees; Microsatellites; Species complex; Species delimitation |
| Abstract |
Background and aims – The evolutionary history of Amazonia’s hyperabundant tropical tree species, also known as “hyperdominant” species, remains poorly investigated. We assessed whether the hyperdominant Eschweilera coriacea (DC.) S.A.Mori (Lecythidaceae) represents a single genetically cohesive species, and how its genetic constitution relates to other species from the same clade with which it occurs sympatrically in French Guiana. Methods – We sampled 152 individuals in nine forest sites in French Guiana, representing 11 species of the genus Eschweilera all belonging to the Parvifolia clade, with emphasis on E. coriacea. Samples were genotyped at four simple sequence repeat (SSR) markers. We delimited gene pools, i.e., genetically coherent putative taxa, using STRUCTURE software and principal component analysis. We compared the genetic assignment of individuals with their morphological species determination and estimated genetic diversity and differentiation for gene pools and species. We also estimated genome size using flow cytometry. Key results – SSR profiles commonly displayed up to four alleles per genotype, suggesting that the investigated Eschweilera species bear a paleopolyploid signature. Flow cytometry suggested that the studied species are diploid with haploid genome sizes of 871–1046 Mbp. We detected five gene pools and observed a good correspondence between morphological and genetic delimitation for Eschweilera sagotiana Miers and the undescribed morphospecies E. sp. 3 (which resembles E. grandiflora (Aubl.) Sandwith), and to a lesser extent for E. decolorans Sandwith and E. micrantha (O.Berg) Miers. Eschweilera coriacea was the most genetically diverse species and included individuals assigned to each gene pool. Conclusions – We found no conclusive evidence for cryptic species within E. coriacea in French Guiana. SSRs detected fewer gene pools than expected based on morphology in the Parvifolia clade but discriminated evolutionary relationships better than available plastid markers. A positive trend between demographic abundance of species and allelic richness illustrates that hyperdominants may have a high evolutionary potential. This hypothesis can be tested using more powerful genomic data in combination with tree phenotypic trait variation and characterization of niche breadth, to enhance our understanding of the causes of hyperdominance in Amazonian trees. |
| Address |
University of Copenhagen, Forest, Nature and Biomass, Rolighedsvej 23, Frederiksberg C, DK-1958, Denmark |
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Societe Royale de Botanique de Belgique |
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Edition |
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| ISSN |
20323913 (Issn) |
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no |
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EcoFoG @ webmaster @ |
Serial |
928 |
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Lamarre, G.P.A.; Mendoza, I.; Fine, P.V.A.; Baraloto, C. |
| Title |
Leaf synchrony and insect herbivory among tropical tree habitat specialists |
Type |
Journal Article |
| Year |
2014 |
Publication |
Plant Ecology |
Abbreviated Journal |
Plant Ecol. |
| Volume |
215 |
Issue |
2 |
Pages |
209-220 |
| Keywords |
Escape; French Guiana; Herbivorous insects; Phenology; Resource availability; Time lag |
| Abstract |
Growth defense tradeoff theory predicts that plants in low-resource habitats invest more energy in defense mechanisms against natural enemies than growth, whereas plants in high-resource habitats can afford higher leaf loss rates. A less-studied defense against herbivores involves the synchrony of leaf production, which can be an effective defense strategy if leaf biomass production exceeds the capacity of consumption by insects. The aim of this study was to determine whether leaf synchrony varied across habitats with different available resources and whether insects were able to track young leaf production among tree habitat specialists in a tropical forest of French Guiana. We predicted that high-resource habitats would exhibit more synchrony in leaf production due to the low cost and investment to replace leaf tissue. We also expected closer patterns of leaf synchrony and herbivory within related species, assuming that they shared herbivores. We simultaneously monitored leaf production and herbivory rates of five pairs of tree species, each composed of a specialist of terra firme or white-sand forests within the same lineage. Our prediction was not supported by the strong interaction of habitat and lineage for leaf synchrony within individuals of the same species; although habitat specialists differed in leaf synchrony within four of five lineages, the direction of the effect was variable. All species showed short time lags for the correlation between leaf production and herbivory, suggesting that insects are tightly tracking leaf production, especially for the most synchronous species. Leaf synchrony may provide an important escape defense against herbivores, and its expression appears to be constrained by both evolutionary history and environmental factors. © 2014 Springer Science+Business Media Dordrecht. |
| Address |
Department of Biology, University of Florida, Gainesville, FL, 32611, United States |
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13850237 (Issn) |
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| Notes |
Export Date: 24 February 2014; Source: Scopus; Coden: Plecf; Language of Original Document: English; Correspondence Address: Lamarre, G. P. A.; Université Antilles Guyane, UMR Ecologie des Forêts de Guyane, 97310 Kourou, French Guiana; email: greglamarre973@gmail.com; Funding Details: DEB-0743103/0743800, NSF, National Science Foundation |
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EcoFoG @ webmaster @ |
Serial |
530 |
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| Author |
Seymour, R.S.; Gibernau, M.; Pirintsos, S.A. |
| Title |
Thermogenesis of three species of Arum from Crete |
Type |
Journal Article |
| Year |
2009 |
Publication |
Plant Cell and Environment |
Abbreviated Journal |
Plant Cell Environ. |
| Volume |
32 |
Issue |
10 |
Pages |
1467-1476 |
| Keywords |
Araceae; arum lily; inflorescence; pollination; temperature regulation |
| Abstract |
Inflorescences of arum lilies have a three-part spadix with a scent-producing, sterile appendix above two bands of fertile male and female florets. The appendix and male florets are thermogenic, but with different temporal patterns. Heat-production was measured in Arum concinnatum, A. creticum and A. idaeum. The male florets of A. concinnatum showed a 3 d continuous episode of thermogenesis with three waves, and the appendix warmed in a single, 6 h episode. Maximum fresh-mass-specific CO2 production rate was 0.17 μmol s(-1) g(-1) to achieve a 10.9 degrees C temperature elevation by the appendix, and 0.92 μmol s(-1) g(-1) to achieve a 4.8 degrees C elevation by male florets. Reversible, physiological temperature regulation was not evident in either tissue. Respiration increased with tissue temperatures with Q(10) values of 1.8-3.9, rather than less than 1.0 as occurs in thermoregulatory flowers. Experimental step changes in temperature of appendix and male floret tissues also failed to show thermoregulatory responses. The patterns of thermogenesis therefore appear to be fixed by the temporal sequence of blooming. Thermogenesis in the alpine species, A. creticum and A. idaeum, was significantly lower than in the lowland A. concinnatum, possibly related to difficulty in raising floral temperature in their cold and windy habitat. |
| Address |
[Seymour, Roger S.] Univ Adelaide, Adelaide, SA 5005, Australia, Email: roger.seymour@adelaide.edu.au |
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WILEY-BLACKWELL PUBLISHING, INC |
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0140-7791 |
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ISI:000269592300016 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
195 |
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Parelle, J.; Zapater, M.; Scotti-Saintagne, C.; Kremer, A.; Jolivet, Y.; Dreyer, E.; Brendel, O. |
| Title |
Quantitative trait loci of tolerance to waterlogging in a European oak (Quercus robur L.): physiological relevance and temporal effect patterns |
Type |
Journal Article |
| Year |
2007 |
Publication |
Plant Cell and Environment |
Abbreviated Journal |
Plant Cell Environ. |
| Volume |
30 |
Issue |
4 |
Pages |
422-434 |
| Keywords |
allelic substitution effect; correlation clustering; epinasty; hypertrophied lenticel; multi-environment model; root hypoxia |
| Abstract |
Quercus robur L. is a mid-European broadleaved tree species that grows readily on temporary waterlogged soils. An experiment aiming to identify potential markers of tolerance to waterlogging in this species and to assess the degree of genetic control over the corresponding traits was conducted. Quantitative trait loci (QTL) were assessed in an F-1 progeny for responses to waterlogging, and the relevance of the observed traits as markers of tolerance was investigated using a precise description of the time course of their expression. Five significant QTL involved in the response to waterlogging were identified. In particular, QTL were detected for the development of hypertrophied lenticels and for the degree of leaf epinasty, but not for the formation of adventitious roots. A multi-environment QTL model allowed a detailed description of the time course (7 weeks) of the allelic substitution effect of some of these QTL. Correlation clustering identified significant clusters of QTL, at inter-trait as well as at intra-trait level. These clusters suggest the occurrence of a genetically controlled response cascade to waterlogging. |
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UHP, UMR 1137, Ctr INRA Nancy, F-54280 Champenoux, France, Email: brendel@nancy.inra.fr |
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BLACKWELL PUBLISHING |
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0140-7791 |
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ISI:000244419700005 |
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EcoFoG @ eric.marcon @ |
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219 |
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