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Blundo, Cecilia ; Carilla, Julieta ; Grau, Ricardo ; Malizia, Malizia ; Malizia, Lucio ; Osinaga-Acosta, Oriana ; Bird, Michael ;Bradford, Matt ; Catchpole, Damien ; Ford, Ford ;Graham, Andrew ; Hilbert, David ; Kemp, Jeanette ; Laurance, Susan ; Laurance, William ; Yoko Ishida, Françoise ; Marshall, Andrew ; Waite, Catherine ; ForestPlots.net nx, Cecilia Blundo a, Julieta Carilla a, Ricardo Grau a, Agustina Malizia a, Lucio Malizia b, Oriana Osinaga-Acosta a, Michael Bird c, Matt Bradford d, Damien Catchpole e, Andrew Ford d, Andrew Graham f, David Hilbert g, Jeanette Kemp h, Susan Laurance i, William Laurance i, Francoise Yoko Ishida j, Andrew Marshall k,l,m, Catherine Waite k, Hannsjoerg Woell n, Jean-Francois Bastin o, Marijn Bauters p, Hans Beeckman q, Pfascal Boeckx r, Jan Bogaert s, Charles De Canniere t, Thales de Haulleville u, Jean-Louis Doucet v, Olivier Hardy w, Wannes Hubau x, Elizabeth Kearsley y, Hans Verbeeck z, Jason Vleminckx aa, Steven W. Brewer ab, Alfredo Alarc´on ac, Alejandro Araujo-Murakami ad, Eric Arets ae, Luzmila Arroyo ad, Ezequiel Chavez af, Todd Fredericksen ac, Ren´e Guill´en Villaroel ag, Gloria Gutierrez Sibauty ah, Timothy Killeen ai, Juan Carlos Licona ac, John Lleigue ae, Casimiro Mendoza aj, Samaria Murakami ae, Alexander Parada Gutierrez ad, Guido Pardo ak, Marielos Pe˜na-Claros ae, Lourens Poorter ae, Marisol Toledo al, Jeanneth Villalobos Cayo am, Laura Jessica Viscarra ai, Vincent Vos an, Jorge Ahumada ao, Everton Almeida ap, Jarcilene Almeida aq, Edmar Almeida de Oliveira ar, Wesley Alves da Cruz as, Atila Alves de Oliveira at, Fabrício Alvim Carvalho au, Fl´avio Amorim Obermuller av, Ana Andrade aw, Fernanda Antunes Carvalho ax, Simone Aparecida Vieira ay, Ana Carla Aquino az, Luiz Arag˜ao ba, Ana Claudia Araújo bb, Marco Antonio Assis bc, Jose Ataliba Mantelli Aboin Gomes bd, Fabrício Baccaro be, Plínio Barbosa de Camargo bf, Paulo Barni bg, Jorcely Barroso bh, Luis Carlos Bernacci bi, Kauane Bordin bj, Marcelo Brilhante de Medeiros bk, Igor Broggio bl, Jos´e Luís Camargo av, Domingos Cardoso bm, Maria Antonia Carniello as, Andre Luis Casarin Rochelle bn, Carolina Castilho bo, Antonio Alberto Jorge Farias Castro bp, Wendeson Castro bq, Sabina Cerruto Ribeiro bh, Fl´avia Costa br, Rodrigo Costa de Oliveira bs, Italo Coutinho bt, John Cunha bu, Lola da Costa bv, Lucia da Costa Ferreira bw, Richarlly da Costa Silva bx, Marta da Graça Zacarias Simbine ay, Vitor de Andrade Kamimura bc, Haroldo Cavalcante de Lima by, Lia de Oliveira Melo bz, Luciano de Queiroz ca, Jos´e Romualdo de Sousa Lima cb, M´ario do Espírito Santo cc, Tomas Domingues cd, Nayane Cristina dos Santos Prestes ce, Steffan Eduardo Silva Carneiro cf, Fernando Elias cg, Gabriel Eliseu cf, Thaise Emilio ch, Camila Laís Farrapo ci, Letícia Fernandes bh, Gustavo Ferreira cf, Joice Ferreira bk, Leandro Ferreira cj, Socorro Ferreira ck, Marcelo Fragomeni Simon bk, Maria Aparecida Freitas cl, Queila S. García cm, Angelo Gilberto Manzatto cn, Paulo Graça co, Frederico Guilherme cf, Eduardo Hase cl, Niro Higuchi cp, Mariana Iguatemy cq, Reinaldo Imbrozio Barbosa cr, Margarita Jaramillo cs, Woell n, Jean-Francois Bastin o, Marijn Bauters p, Hans Beeckman q, Pfascal Boeckx r, Jan Bogaert s, Charles De Canniere t, Thales de Haulleville u, Jean-Louis Doucet v, Olivier Hardy w, Wannes Hubau x, Elizabeth Kearsley y, Hans Verbeeck z, Jason Vleminckx aa, Steven W. Brewer ab, Alfredo Alarc´on ac, Alejandro Araujo-Murakami ad, Eric Arets ae, Luzmila Arroyo ad, Ezequiel Chavez af, Todd Fredericksen ac, Ren´e Guill´en Villaroel ag, Gloria Gutierrez Sibauty ah, Timothy Killeen ai, Juan Carlos Licona ac, John Lleigue ae, Casimiro Mendoza aj, Samaria Murakami ae, Alexander Parada Gutierrez ad, Guido Pardo ak, Marielos Pe˜na-Claros ae, Lourens Poorter ae, Marisol Toledo al, Jeanneth Villalobos Cayo am, Laura Jessica Viscarra ai, Vincent Vos an, Jorge Ahumada ao, Everton Almeida ap, Jarcilene Almeida aq, Edmar Almeida de Oliveira ar, Wesley Alves da Cruz as, Atila Alves de Oliveira at, Fabrício Alvim Carvalho au, Fl´avio Amorim Obermuller av, Ana Andrade aw, Fernanda Antunes Carvalho ax, Simone Aparecida Vieira ay, Ana Carla Aquino az, Luiz Arag˜ao ba, Ana Claudia Araújo bb, Marco Antonio Assis bc, Jose Ataliba Mantelli Aboin Gomes bd, Fabrício Baccaro be, Plínio Barbosa de Camargo bf, Paulo Barni bg, Jorcely Barroso bh, Luis Carlos Bernacci bi, Kauane Bordin bj, Marcelo Brilhante de Medeiros bk, Igor Broggio bl, Jos´e Luís Camargo av, Domingos Cardoso bm, Maria Antonia Carniello as, Andre Luis Casarin Rochelle bn, Carolina Castilho bo, Antonio Alberto Jorge Farias Castro bp, Wendeson Castro bq, Sabina Cerruto Ribeiro bh, Fl´avia Costa br, Rodrigo Costa de Oliveira bs, Italo Coutinho bt, John Cunha bu, Lola da Costa bv, Lucia da Costa Ferreira bw, Richarlly da Costa Silva bx, Marta da Graça Zacarias Simbine ay, Vitor de Andrade Kamimura bc, Haroldo Cavalcante de Lima by, Lia de Oliveira Melo bz, Luciano de Queiroz ca, Jos´e Romualdo de Sousa Lima cb, M´ario do Espírito Santo cc, Tomas Domingues cd, Nayane Cristina dos Santos Prestes ce, Steffan Eduardo Silva Carneiro cf, Fernando Elias cg, Gabriel Eliseu cf, Thaise Emilio ch, Camila Laís Farrapo ci, Letícia Fernandes bh, Gustavo Ferreira cf, Joice Ferreira bk, Leandro Ferreira cj, Socorro Ferreira ck, Marcelo Fragomeni Simon bk, Maria Aparecida Freitas cl, Queila S. García cm, Angelo Gilberto Manzatto cn, Paulo Graça co, Frederico Guilherme cf, Eduardo Hase cl, Niro Higuchi cp, Mariana Iguatemy cq, Reinaldo Imbrozio Barbosa cr, Margarita Jaramillo cs, |
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EcoFoG @ webmaster @ |
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1020 |
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Donald, Julian ; Murienne, Jérôme ; Chave, Jérome ; Iribar, Amaia ; Louisanna, Eliane ; Manzi, Sophie ; Roy, Melanie ; Tao, Shengli ; Orivel, Jérome ; Schimann, Heidy; Zinger, Lucie |
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Multi-taxa environmental DNA inventories reveal distinct taxonomic and functional diversity in urban tropical forest fragments |
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2021 |
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Global Ecology and Conservation |
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29 |
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e01724 |
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Urban expansion and associated habitat transformation drives shifts in biodiversity, with declines in taxonomic and functional diversity. Forests fragments within urban landscapes offer a number of ecosystem services, and help to maintain biodiversity and ecosystem functions. Here, we focus on a tropical forest environment, and on the soil biota. Using eDNA metabarcoding, we compare forest fragments within the city of Cayenne, French Guiana, with a neighbouring continuous undisturbed forest. We wished to determine if urban forest fragments conserve high levels of alpha and beta diversity as well as similar functional composition for plants, soil animals, fungi and bacteria. We found that alpha diversity is similar across habitats for plants and fungi, lower in urban forests for metazoans and higher for bacteria. We also found that urban forests communities differ from undisturbed forests in their taxonomic composition, with urban forests exhibiting greater turnover between fragments potentially caused by ecological drift and limited dispersal. However, their functional composition exhibited limited differences, with an enrichment of palms, arbuscular mycorrhizal fungi and bacteria and a depletion of climber plants and termites. Thus, although urban forest fragments do shelter soil biodiversity that differs from native forests, the losses of soil functions may be relatively limited. This study demonstrates the strong potential of a multi-taxa eDNA approach for rapid inventories across taxonomic kingdoms, in particular for cryptic soil diversity. It also demonstrates the key role of urban forest fragments in conserving biodiversity and ecosystem function, and points to a need for more systematic monitoring of these areas in urban management plans. |
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EcoFoG @ webmaster @ |
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1025 |
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Poorter, Laurens ; Craven, Dylan ; Jakovac, Catarina C. ; van der Sande, Masha T. ; Amissah, Lucy ; Bongers, Frans ; Chazdon, Robin ; Farrioir, Caroline E. ; Kambach, Stephan ; Meave, Jorge A. ; Munoz, Rodrigo ; Norden, Natalia ; Ruger, Nadja ; van Breugel, Michiel ; et all ...... |
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Multidimensional tropical forest recovery |
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2021 |
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Science |
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374 |
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6573 |
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1370-1376 |
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Tropical forests disappear rapidly because of deforestation, yet they have the potential to regrow naturally on abandoned lands. We analyze how 12 forest attributes recover during secondary succession and how their recovery is interrelated using 77 sites across the tropics. Tropical forests are highly resilient to low-intensity land use; after 20 years, forest attributes attain 78% (33 to 100%) of their old-growth values. Recovery to 90% of old-growth values is fastest for soil (<1 decade) and plant functioning (<2.5 decades), intermediate for structure and species diversity (2.5 to 6 decades), and slowest for biomass and species composition (>12 decades). Network analysis shows three independent clusters of attribute recovery, related to structure, species diversity, and species composition. Secondary forests should be embraced as a low-cost, natural solution for ecosystem restoration, climate change mitigation, and biodiversity conservation. |
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American association for the advancement of science |
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EcoFoG @ webmaster @ |
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1039 |
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Van Langenhove, Leandro ; Depaepe, Thomas ; Verryckt, Lore T. ; Vallicrosa, Helena ; Fuchslueger, Lucia ; Lugli, Laynara F. ; Bréchet, Laëtitia M. ; Ogaya, Roma ; Llusia, Joan ; Urbina, Ifigenia ; Gargallo-Garriga, Albert ; Grau, Oriol ; Richter, Andreas ; Penuelas, Josep ; Van Der Straeten, Dominique ; August Janssens, Ivan A. |
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Impact of Nutrient Additions on Free-Living Nitrogen Fixation in Litter and Soil of Two French-Guianese Lowland Tropical Forests |
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2021 |
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JGR Biogeosciences |
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126 |
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7 |
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e2020JG006023 |
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In tropical forests, free-living Biological nitrogen (N) fixation (BNF) in soil and litter tends to decrease when substrate N concentrations increase, whereas increasing phosphorus (P) and molybdenum (Mo) soil and litter concentrations have been shown to stimulate free-living BNF rates. Yet, very few studies explored the effects of adding N, P, and Mo together in a single large-scale fertilization experiment, which would teach us which of these elements constrain or limit BNF activities. At two distinct forest sites in French Guiana, we performed a 3-year in situ nutrient addition study to explore the effects of N, P, and Mo additions on leaf litter and soil BNF. Additionally, we conducted a short-term laboratory study with the same nutrient addition treatments (+N, +N+P, +P, +Mo, and +P+Mo). We found that N additions alone suppressed litter free-living BNF in the field, but not in the short-term laboratory study, while litter free-living BNF remained unchanged in response to N+P additions. Additionally, we found that P and P+Mo additions stimulated BNF in leaf litter, both in the field and in the lab, while Mo alone yielded no changes. Soil BNF increased with P and P+Mo additions in only one of the field sites, while in the other site soil BNF increased with Mo and P+Mo additions. We concluded that increased substrate N concentrations suppress BNF. Moreover, both P and Mo have the potential to limit free-living BNF in these tropical forests, but the balance between P versus Mo limitation is determined by site-specific characteristics of nutrient supply and demand. |
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American Geophysical Union |
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1040 |
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Barr, Cheryl B. ; Cerdan, Axel ; Clavier, Simon ; Murienne, Jérôme |
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Amazonopsis cerdani (Coleoptera: Elmidae: Elminae), a New Species of RiffleBeetle from French Guiana with Habitat Observations |
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2021 |
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The Coleopterists Bulletin |
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2 |
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427-439 |
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A third species of Amazonopsis , Amazonopsis cerdani Barr and Cerdan, new species (Coleoptera: Elmidae), is herein described from French Guiana. One female paratype of Amazonopsis theranyi Barr from Peru is tentatively reassigned to A. cerdani as a non-paratype. Photographic images of the male and female habitus, and the male genitalia, are provided, as is a distribution map and a key to the species. Amazonopsis cerdani differs from A. theranyi from Peru and Amazonopsis camachoi Barr from Venezuela by the presence of prominent spines on protarsomeres 1–4 of males, among other characters. The habitat of this species is small, shallow, lowland streams with sandy-silty substrates and low flow. Specimens were collected from unconsolidated leaf litter in depositional areas, and from stick and leaf packs lodged in the current. Genetic analysis conducted on three specimens from two localities, a male and two females, showed that they are conspecific. |
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BioOne |
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EcoFoG @ webmaster @ |
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1035 |
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Levionnois, S.; Jansen, S.; Wandji, R.T.; Beauchêne, J.; Ziegler, C.; Coste, S.; Stahl, C.; Delzon, S.; Authier, L.; Heuret, P. |
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Linking drought-induced xylem embolism resistance to wood anatomical traits in Neotropical trees |
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2021 |
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New Phytologist |
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New Phytol. |
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229 |
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3 |
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1453-1466 |
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bordered pits; drought-induced embolism; pit membrane; transmission electron microscopy; tropical trees; vessel grouping; xylem anatomy |
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Drought-induced xylem embolism is considered to be one of the main factors driving mortality in woody plants worldwide. Although several structure–functional mechanisms have been tested to understand the anatomical determinants of embolism resistance, there is a need to study this topic by integrating anatomical data for many species. We combined optical, laser, and transmission electron microscopy to investigate vessel diameter, vessel grouping, and pit membrane ultrastructure for 26 tropical rainforest tree species across three major clades (magnoliids, rosiids, and asteriids). We then related these anatomical observations to previously published data on drought-induced embolism resistance, with phylogenetic analyses. Vessel diameter, vessel grouping, and pit membrane ultrastructure were all predictive of xylem embolism resistance, but with weak predictive power. While pit membrane thickness was a predictive trait when vestured pits were taken into account, the pit membrane diameter-to-thickness ratio suggests a strong importance of the deflection resistance of the pit membrane. However, phylogenetic analyses weakly support adaptive coevolution. Our results emphasize the functional significance of pit membranes for air-seeding in tropical rainforest trees, highlighting also the need to study their mechanical properties due to the link between embolism resistance and pit membrane diameter-to-thickness ratio. Finding support for adaptive coevolution also remains challenging. © 2020 The Authors New Phytologist © 2020 New Phytologist Foundation |
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UMR BIOGECO, INRAE, Université de Bordeaux, Pessac, 33615, France |
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Blackwell Publishing Ltd |
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0028646x (Issn) |
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997 |
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Valverde-Barrantes, Oscar J. ; Authier, Louise ; Schimann, Heidy ; Baraloto, Christophier |
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Root anatomy helps to reconcile observed root trait syndromes in tropical tree species |
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2021 |
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American Journal of Botany |
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108 |
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5 |
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744-755 |
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Botanical Society of America |
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EcoFoG @ webmaster @ |
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1056 |
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Bonhomme, Camille ; Céréghino, Régis ; Carrias, Jean-François ; Compin, Arthur ; Corbara, Bruno ; Jassey, Vincent E.J. ; Leflaive, Joséphine ; Farjalla, Vinicius F. ; Marino, Nicholas A.C. ; Rota, Thibault ; Srivastava, Diane S. ; Leroy, Celine |
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In situ resistance, not immigration, supports invertebrate community resilience to drought intensification in a neotropical ecosystem |
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2021 |
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Journal of Animal Ecology |
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90 |
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9 |
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2015-2026 |
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While future climate scenarios predict declines in precipitations in many regions of the world, little is known of the mechanisms underlying community resilience to prolonged dry seasons, especially in ‘naïve’ Neotropical rainforests. Predictions of community resilience to intensifying drought are complicated by the fact that the underlying mechanisms are mediated by species' tolerance and resistance traits, as well as rescue through dispersal from source patches. We examined the contribution of in situ tolerance-resistance and immigration to community resilience, following drought events that ranged from the ambient norm to IPCC scenarios and extreme events. We used rainshelters above rainwater-filled bromeliads of French Guiana to emulate a gradient of drought intensity (from 1 to 3.6 times the current number of consecutive days without rainfall), and we analysed the post-drought dynamics of the taxonomic and functional community structure of aquatic invertebrates to these treatments when immigration is excluded (by netting bromeliads) or permitted (no nets). Drought intensity negatively affected invertebrate community resistance, but had a positive influence on community recovery during the post-drought phase. After droughts of 1 to 1.4 times the current intensities, the overall invertebrate abundance recovered within invertebrate life cycle durations (up to 2 months). Shifts in taxonomic composition were more important after longer droughts, but overall, community composition showed recovery towards baseline states. The non-random patterns of changes in functional community structure indicated that deterministic processes like environmental filtering of traits drive community re-assembly patterns after a drought event. Community resilience mostly relied on in situ tolerance-resistance traits. A rescue effect of immigration after a drought event was weak and mostly apparent under extreme droughts. Under climate change scenarios of drought intensification in Neotropical regions, community and ecosystem resilience could primarily depend on the persistence of suitable habitats and on the resistance traits of species, while metacommunity dynamics could make a minor contribution to ecosystem recovery. Climate change adaptation should thus aim at identifying and preserving local conditions that foster in situ resistance and the buffering effects of habitat features. |
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British Ecological Society |
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EcoFoG @ webmaster @ |
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1012 |
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Vergne, Antoine ; Darbot, Vincent ; Bardot, Corinne ; Enault, François ; Le Jeune, Anne-Hélène ; Carrias, Jean-François ; Corbara, Bruno ; Céréghino, Régis ; Leroy, Celine ; Jeanthon, Christian ; Giraud, Eric ; Mary, Isabelle ; Lehours, Anne-Catherine |
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Assemblages of anoxygenic phototrophic bacteria in tank bromeliads exhibit a host-specific signatureit |
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2021 |
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Journal of Ecology |
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109 |
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7 |
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2550-2565 |
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Anoxygenic phototrophic bacteria (APB) are a very significant metabolic functional group in the phytotelmata of tank-forming Bromeliaceae plants. Considering the close relationships existing between the bromeliad and its tank microbiota, the dominance of APB raises the question of their role in the ecology and evolution of these plants. Here, using pufM gene sequencing for taxonomic profiling, we investigated the structure of APB communities in the tanks of five bromeliad species exhibiting different habitat characteristics (i.e. physicochemical factors associated with the host), and occurring in different localities of French Guiana.
We found that APB assemblages were specific to plant species and were less dependent on location or on bromeliad habitat characteristics. This convergence suggests that the identity of the bromeliad species per se is more important than habitat filtering or dispersal to control specific assembly rules for APB. The pufM OTUs were affiliated with five orders of Alpha- and Beta-proteobacteria (Rhodobacterales, Sphingomonadales, Rhizobiales, Burkholderiales and Rhodospirillales), and we assume that they may be major components of the core microbiota of plant-held waters. Our findings also revealed that up to 79% of the sequences were affiliated with APB clades possessing nitrogen-fixing genes suggesting that this metabolic capability is widespread within the APB community inhabiting tank bromeliads. We hypothesized that bromeliads may benefit nutritionally from associations with free-living APB capable to fix atmospheric nitrogen. Synthesis. Understanding the dominance of APB in tank bromeliads and determining whether a potential interplay exists between these partners is an intriguing aspect of possible mutualistic and coevolving interactions between the two existing forms of chlorophototrophy (i.e. bacteriochlorophyll-based anoxygenic and chlorophyll-based oxygenic phototrophy). In the present study, we found that bromeliad species was the main factor that explained variance in APB community composition. These findings suggest that APB and tank bromeliads may have a close, mutualistic relationship and we hypothesize according to our genomic analyses that APB may promote the bromeliad growth by provisioning essential nutrients like nitrogen. |
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British Ecological Society |
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EcoFoG @ webmaster @ |
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1023 |
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Poyatos, Rafael ; Granda, Victor ; Flo, Victor ; Adams, Mark A. ; Adorjan, Balazs ; Aguadé, David ; Aidar, Marcos P.M. ; Allen, Scott ; Alvarado-Barrientos, M.Susana ; Anderson-Teixeira, Kristina J. ; Aparecido, Luiza Maria ; Arain, M. Altaf ; Aranda, Ismael ; Asbjornsen, Heidi ; Baxter, Robert |
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Global transpiration data from sap flow measurements: the SAPFLUXNET database |
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2021 |
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Earth System Science Data |
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2607–2649 |
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Plant transpiration links physiological responses of vegetation to water supply and demand with hydrological, energy, and carbon budgets at the land–atmosphere interface. However, despite being the main land evaporative flux at the global scale, transpiration and its response to environmental drivers are currently not well constrained by observations. Here we introduce the first global compilation of whole-plant transpiration data from sap flow measurements (SAPFLUXNET, https://sapfluxnet.creaf.cat/, last access: 8 June 2021). We harmonized and quality-controlled individual datasets supplied by contributors worldwide in a semi-automatic data workflow implemented in the R programming language. Datasets include sub-daily time series of sap flow and hydrometeorological drivers for one or more growing seasons, as well as metadata on the stand characteristics, plant attributes, and technical details of the measurements. SAPFLUXNET contains 202 globally distributed datasets with sap flow time series for 2714 plants, mostly trees, of 174 species. SAPFLUXNET has a broad bioclimatic coverage, with woodland/shrubland and temperate forest biomes especially well represented (80 % of the datasets). The measurements cover a wide variety of stand structural characteristics and plant sizes. The datasets encompass the period between 1995 and 2018, with 50 % of the datasets being at least 3 years long. Accompanying radiation and vapour pressure deficit data are available for most of the datasets, while on-site soil water content is available for 56 % of the datasets. Many datasets contain data for species that make up 90 % or more of the total stand basal area, allowing the estimation of stand transpiration in diverse ecological settings. SAPFLUXNET adds to existing plant trait datasets, ecosystem flux networks, and remote sensing products to help increase our understanding of plant water use, plant responses to drought, and ecohydrological processes. SAPFLUXNET version 0.1.5 is freely available from the Zenodo repository (https://doi.org/10.5281/zenodo.3971689; Poyatos et al., 2020a). The “sapfluxnetr” R package – designed to access, visualize, and process SAPFLUXNET data – is available from CRAN. |
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EcoFoG @ webmaster @ |
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