Lamarre, G. P. A., Amoretti, D. S., Baraloto, C., Bénéluz, F., Mesones, I., & Fine, P. V. A. (2016). Phylogenetic Overdispersion in Lepidoptera Communities of Amazonian White-sand Forests. Biotropica, 48(1), 101–109.
Abstract: In the Amazon basin and the Guiana Shield, white-sand (WS) forests are recognized as a low-resource habitat often composed by a distinct flora with many edaphic endemic plants. Small patches of nutrient-poor white-sand forests can pose a series of challenges to plants and animals. For plants, these challenges have been shown to function as strong filters that in turn drive taxonomic, functional and phylogenetic plant composition. However, very little is known about animal communities in WS forest and the effect that low-resource availability may have on higher trophic levels. Here, we investigate the diversity of both taxonomic and phylogenetic diversity of three Lepidoptera families' (Nymphalidae, Saturniidae, and Sphingidae) assemblages between low-resource (White-Sand Forest) and two adjacent high-resource habitats, terra firme clay and seasonally flooded forests. We found no clear effect of habitat type on taxonomic composition although butterfly and moth species abundance differed among the three contrasted habitats. The WS forest Lepidoptera community is significantly more phylogenetically overdispersed than expected by chance. We suggest that these low-resource habitats filter the number of plant lineages which, in turn, creates a bottom-up control structuring Lepidoptera phylogenetic structure. We recommend long-term sampling on Lepidoptera community both at larval and adult stages that may complement this study and test hypotheses linking herbivore phylogenetic structure to plant resource availability and trophic cascade theory. © 2016 The Association for Tropical Biology and Conservation.
Keywords: varillales; Amazon basin; Bottom-up; Lepidoptera composition; Moth, Nymphalidae; Phylogenetic structure
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Zinger, L., Chave, J., Coissac, E., Iribar, A., Louisanna, E., Manzi, S., et al. (2016). Extracellular DNA extraction is a fast, cheap and reliable alternative for multi-taxa surveys based on soil DNA. Soil Biology and Biochemistry, 96, 16–19.
Abstract: DNA metabarcoding on soil samples is increasingly used for large-scale and multi-taxa biodiversity studies. However, DNA extraction may be a major bottleneck for such wide uses. It should be cost/time effective and allow dealing with large sample volumes so as to maximise the representativeness of both micro- and macro-organisms diversity. Here, we compared the performances of a fast and cheap extracellular DNA extraction protocol with a total DNA extraction method in retrieving bacterial, eukaryotic and plant diversity from tropical soil samples of ca. 10 g. The total DNA extraction protocol yielded more high-quality DNA. Yet, the extracellular DNA protocol provided similar diversity assessments although it presented some differences in clades relative abundance and undersampling biases. We argue that extracellular DNA is a good compromise between cost, labor, and accuracy for high-throughput DNA metabarcoding studies of soil biodiversity. © 2016 Elsevier Ltd.
Keywords: DNA extraction protocol; DNA metabarcoding; Multi-taxa biodiversity; Tropical forest
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Houadria, M., Blüthgen, N., Salas-Lopez, A., Schmitt, M. - I., Arndt, J., Schneider, E., et al. (2016). The relation between circadian asynchrony, functional redundancy, and trophic performance in tropical ant communities. Ecology, 97(1), 225–235.
Abstract: The diversity-stability relationship has been under intense scrutiny for the past decades, and temporal asynchrony is recognized as an important aspect of ecosystem stability. In contrast to relatively well- studied interannual and seasonal asynchrony, few studies investigate the role of circadian cycles for ecosystem stability. Here, we studied multifunctional redundancy of diurnal and nocturnal ant communities in four tropical rain forest sites. We analyzed how it was influenced by species richness, functional performance, and circadian asynchrony. In two neotropical sites, species richness and functional redundancy were lower at night. In contrast, these parameters did not differ in the two paleotropical sites we studied. Circadian asynchrony between species was pronounced in the neotropical sites, and increased circadian functional redundancy. In general, species richness positively affected functional redundancy, but the effect size depended on the temporal and spatial breadth of the species with highest functional performance. Our analysis shows that high levels of trophic performance were only reached through the presence of such high- performing species, but not by even contributions of multiple, less- efficient species. Thus, these species can increase current functional performance, but reduce overall functional redundancy. Our study highlights that diurnal and nocturnal ecosystem properties of the very same habitat can markedly differ in terms of species richness and functional redundancy. Consequently, like the need to study multiple ecosystem functions, multiple periods of the circadian cycle need to be assessed in order to fully understand the diversity- stability relationship in an ecosystem. © 2016 by the Ecological Society of America.
Keywords: Diel turnover; Ecosystem functioning; Functional diversity; Multifunctional redundancy; Sampling effect; Temporal partitioning; Tropical rain forests
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Scotti, I., González-Martínez, S. C., Budde, K. B., & Lalague, H. (2016). Fifty years of genetic studies: what to make of the large amounts of variation found within populations? Annals of Forest Science, 73(1), 69–75.
Keywords: Intra-specific variation; Microgeography; Natural selection; Population genomics
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Thibaut, B., Denaud, L., Collet, R., Marchal, R., Beauchene, J., Mothe, F., et al. (2016). Wood machining with a focus on French research in the last 50 years. Annals of Forest Science, 73(1), 163–184.
Abstract: Key message: Wood machining is compulsory both for timber separation and the surfacing of wooden objects. The anisotropy, cellular nature and multi-scale level organisation of wood make its cutting complicated to study. During the last 50 years, most of the wood machining subjects were covered by French teams. Context: Woodcutting is a very old technology but scientific research is scarce on the subject. In the last 50 years, much work on basic mechanisms as well as on industrial processes has been done in France. Aims: The specific nature of wood introduces strong differences between wood and metal cutting processes. The paper focuses on French teams’ contributions. Results: The basic aspects of the tool–material interaction for different basic modes in woodcutting are highlighted. In primary conversion such as sawing, veneer cutting or green wood chipping, huge progress comes from automation and the possibility of linking the process to log and product quality through new sensors. In secondary processing, much has been done on the links between the cutting process, surface qualification and the properties of these surfaces for further processing, such as gluing or coating. Tool wear depends on the cutting process, timber quality and species. Trade-offs are required in tool technology and coating technologies may improve tool life. Conclusion: A large amount of knowledge and innovation has come from 50 years of worldwide research effort, with France being particularly active in this period. The transfer of skills from metals cutting industry was often a key, but much is needed to move closer to both metal cutting sector and woodcutting skills among craftsmen. © 2015, INRA and Springer-Verlag France.
Keywords: Primary conversion; Secondary processing; Surface quality; Tool wear
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Bonal, D., Burban, B., Stahl, C., Wagner, F., & Herault, B. (2016). The response of tropical rainforests to drought—lessons from recent research and future prospects. Annals of Forest Science, 73(1), 27–44.
Abstract: Key message: We review the recent findings on the influence of drought on tree mortality, growth or ecosystem functioning in tropical rainforests. Drought plays a major role in shaping tropical rainforests and the response mechanisms are highly diverse and complex. The numerous gaps identified here require the international scientific community to combine efforts in order to conduct comprehensive studies in tropical rainforests on the three continents. These results are essential to simulate the future of these ecosystems under diverse climate scenarios and to predict the future of the global earth carbon balance. Context: Tropical rainforest ecosystems are characterized by high annual rainfall. Nevertheless, rainfall regularly fluctuates during the year and seasonal soil droughts do occur. Over the past decades, a number of extreme droughts have hit tropical rainforests, not only in Amazonia but also in Asia and Africa. The influence of drought events on tree mortality and growth or on ecosystem functioning (carbon and water fluxes) in tropical rainforest ecosystems has been studied intensively, but the response mechanisms are complex. Aims: Herein, we review the recent findings related to the response of tropical forest ecosystems to seasonal and extreme droughts and the current knowledge about the future of these ecosystems. Results: This review emphasizes the progress made over recent years and the importance of the studies conducted under extreme drought conditions or in through-fall exclusion experiments in understanding the response of these ecosystems. It also points to the great diversity and complexity of the response of tropical rainforest ecosystems to drought. Conclusion: The numerous gaps identified here require the international scientific community to combine efforts in order to conduct comprehensive studies in tropical forest regions. These results are essential to simulate the future of these ecosystems under diverse climate scenarios and to predict the future of the global earth carbon balance. © 2015, INRA and Springer-Verlag France.
Keywords: Carbon; Climate; Drought; Global change; Growth; Mortality; Soil; Tropical; Water
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Bossu, J., Beauchene, J., Estevez, Y., Duplais, C., & Clair, B. (2016). New insights on wood dimensional stability influenced by secondary metabolites: The case of a fast-growing tropical species Bagassa guianensis aubl. PLoS ONE, 11(3), e0150777.
Abstract: Challenging evaluation of tropical forest biodiversity requires the reporting of taxonomic diversity but also the systematic characterization of wood properties in order to discover new promising species for timber industry. Among wood properties, the dimensional stability is regarded as a major technological characteristic to validate whether a wood species is adapted to commercial uses. Cell structure and organization are known to influence the drying shrinkage making wood density and microfibrils angle markers of choice to predict wood dimensional stability. On the contrary the role of wood extractive content remains unclear. This work focuses on the fast-growing tropical species Bagassa guianensis and we report herein a correlation between heartwood drying shrinkage and extractive content. Chemical extractions and shrinkage experiments were performed on separate wood twin samples to better evaluate correctly how secondary metabolites influence the wood shrinkage behaviour. Extractive content were qualitatively and quantitatively analysed using HPLC and NMR spectroscopy. We found that B guianensis heartwood has a homogeneous low shrinkage along its radius that could not be explained only by its basic density. In fact the low drying shrinkage is correlated to the high extractive content and a corrected model to improve the prediction of wood dimensional stability is presented. Additionally NMR experiments conducted on sapwood and heartwood extracts demonstrate that secondary metabolites biosynthesis occurs in sapwood thus revealing B. guianensis as a Juglans-Type heartwood formation. This work demonstrates that B. guianensis, a fast-growing species associated with high durability and high dimensional stability, is a good candidate for lumber production and commercial purposes. © 2016 Bossu et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
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Dejean, A., Orivel, J., Azémar, F., Herault, B., & Corbara, B. (2016). A cuckoo-like parasitic moth leads African weaver ant colonies to their ruin. Sci. Rep., 6, 23778.
Abstract: In myrmecophilous Lepidoptera, mostly lycaenids and riodinids, caterpillars trick ants into transporting them to the ant nest where they feed on the brood or, in the more derived 'cuckoo strategy', trigger regurgitations (trophallaxis) from the ants and obtain trophic eggs. We show for the first time that the caterpillars of a moth (Eublemma albifascia; Noctuidae; Acontiinae) also use this strategy to obtain regurgitations and trophic eggs from ants (Oecophylla longinoda). Females short-circuit the adoption process by laying eggs directly on the ant nests, and workers carry just-hatched caterpillars inside. Parasitized colonies sheltered 44 to 359 caterpillars, each receiving more trophallaxis and trophic eggs than control queens. The thus-starved queens lose weight, stop laying eggs (which transport the pheromones that induce infertility in the workers) and die. Consequently, the workers lay male-destined eggs before and after the queen's death, allowing the colony to invest its remaining resources in male production before it vanishes.
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Fayad, I., Baghdadi, N., Bailly, J. - S., Barbier, N., Gond, V., Herault, B., et al. (2016). Regional scale rain-forest height mapping using regression-kriging of spaceborne and airborne LiDAR data: Application on French Guiana. Remote Sensing, 8(3), 240.
Abstract: LiDAR data has been successfully used to estimate forest parameters such as canopy heights and biomass. Major limitation of LiDAR systems (airborne and spaceborne) arises from their limited spatial coverage. In this study, we present a technique for canopy height mapping using airborne and spaceborne LiDAR data (from the Geoscience Laser Altimeter System (GLAS)). First, canopy heights extracted from both airborne and spaceborne LiDAR were extrapolated from available environmental data. The estimated canopy height maps using Random Forest (RF) regression from airborne or GLAS calibration datasets showed similar precisions (~6 m). To improve the precision of canopy height estimates, regression-kriging was used. Results indicated an improvement in terms of root mean square error (RMSE, from 6.5 to 4.2 m) using the GLAS dataset, and from 5.8 to 1.8 m using the airborne LiDAR dataset. Finally, in order to investigate the impact of the spatial sampling of future LiDAR missions on canopy height estimates precision, six subsets were derived from the initial airborne LiDAR dataset. Results indicated that using the regression-kriging approach a precision of 1.8 m on the canopy height map was achievable with a flight line spacing of 5 km. This precision decreased to 4.8 m for flight line spacing of 50 km. © 2016 by the authors.
Keywords: Airborne LiDAR; Canopy height mapping; Forests; French Guiana; ICESat GLAS
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Leitão, R. P., Zuanon, J., Villéger, S., Williams, S. E., Baraloto, C., Fortunel, C., et al. (2016). Rare species contribute disproportionately to the functional structure of species assemblages. Proceedings of the Royal Society B: Biological Sciences, 283(1828).
Abstract: There is broad consensus that the diversity of functional traits within species assemblages drives several ecological processes. It is also widely recognized that rare species are the first to become extinct following human-induced disturbances. Surprisingly, however, the functional importance of rare species is still poorly understood, particularly in tropical species-rich assemblages where the majority of species are rare, and the rate of species extinction can be high. Here, we investigated the consequences of local and regional extinctions on the functional structure of species assemblages. We used three extensive datasets (stream fish from the Brazilian Amazon, rainforest trees from French Guiana, and birds from the Australian Wet Tropics) and built an integrative measure of species rarity versuscommonness, combining local abundance, geographical range, andhabitat breadth. Using different scenarios of species loss, we found a disproportionate impact of rare species extinction for the three groups, with significant reductions in levels of functional richness, specialization, and originality of assemblages, which may severely undermine the integrity of ecological processes. The whole breadth of functional abilities within species assemblages, which is disproportionately supported by rare species, is certainly critical in maintaining ecosystems particularly under the ongoing rapid environmental transitions. © 2016 The Author(s) Published by the Royal Society. All rights reserved.
Keywords: Conservation; Extinction; Functional diversity; Null models; Rarity index; Tropical biodiversity
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