Zaremski, A., Gastonguay, L., Zaremski, C., Chaffanel, F., Le Floch, G., & Beauchene, J. (2013). Capacity of tropical forest soils of french guiana and réunion for depolluting the woods impregnated with biocides. Bois Forets Tropiques, 67(318), 51–58.
Abstract: Wood material for a long time was treated with fungicides or insecticides whose impact on the soil after leaching constitutes a real environmental problem. Nowadays, most of the studies on degradation of these toxic products was carried out with microorganisms which have been isolated in the laboratory. The present study sought to refine the knowledge vis-à-vis these microorganisms, especially wood-destroying fungi degrading pollutants in situ, from which few data are actually available. To decontaminate treated wood, the capacity of wooddestroying microorganisms from tropical forest soils of French Guiana and Reunion was evaluated to degrade toxic biocides. These are pentachlorophenol (PCP) and copper- chromium arsenic based compounds (CCA). Monitoring the degradation of samples of red pine, Pinus resinosa, shows that soils of French Guiana are more efficient than those of Reunion Island in terms of microbial activity vis-àvis these two biocides. A significant difference in loss of mass in specimens of red pine treated with CCA and PCP can range from single to double (respectively 18% and 30%). These findings confirm that CCA is less leacher and less degradable than the PCP by microorganisms in the soil. According to the scale of mass loss in laboratory tests, the wood so treated would be classified very not durable after three years of contact with soil, while the treatment is expected to be very durable.
Keywords: Bioremediation; Copper chromium arsenic(CCA) wood-destroying fungi; Depollution; Loss of mass; Pentachlorophenol(PCP); Treated timber; Tropical soil
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Lachenaud, P., Rossi, V., Thevenin, J. - M., & Doaré, F. (2015). The “Guiana” genetic group: A new source of resistance to cacao (Theobroma cacao L.) black pod rot caused by Phytophthora capsici. Crop Prot., 67, 91–95.
Abstract: Black pod rot, caused by Stramenopiles of the genus Phytophthora, leads to serious production losses in all cocoa growing zones. In order to reduce the impact of these pests, preference is given to genetic control using resistant varieties, and sources of resistance are actively being sought, particularly in wild cacao trees. Surveys were undertaken in the natural cacao tree populations of south-eastern French Guiana between 1985 and 1995 and an abundant amount of plant material belonging to a particular genetic group, the “Guiana” group, was collected. A great deal of work has shown the merits of this genetic group as a source of resistance to Phytophthora palmivora and megakarya. We describe here the results of a global study to assess the resistance of the 186 clones in the “Guiana” group “core collection” to a Guianese strain of Phytophthora capsici (strain Reg 2-6). This study, which used an efficient methodology (fifteen series of tests on leaf discs and a statistical test adapted to the ordinal nature of the basic data), showed that the “Guiana” genetic group is a major source of resistance to P.capsici. Strain Reg 2-6 proves to be particularly virulent, as the Scavina 6 control, an international reference for resistance to Phytophthora, is not resistant to it. However, 24 clones of the “Guiana” group are, and 92 have proved to be more resistant than Scavina 6, thereby showing the interest of the group in genetically controlling P.capsici.Thus, of the clones in the Guiana group that are more resistant to P.capsici than Scavina 6, some, which are also resistant to P.palmivora and/or Phytophthora megakarya, and also displaying some other notable qualities, could be incorporated into cocoa genetic improvement programmes in countries where P.capsici is rife on cacao trees.
Keywords: Black pod; Cocoa; French guiana; Phytophthora capsici; Resistance; Phytophthora capsici; Theobroma cacao
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Marcon, E., & Herault, B. (2015). entropart: An R package to measure and partition diversity. Journal of Statistical Software, 67(8), 1–26.
Abstract: entropart is a package for R designed to estimate diversity based on HCDT entropy or similarity-based entropy. It allows calculating species-neutral, phylogenetic and functional entropy and diversity, partitioning them and correcting them for estimation bias. © 2015, American Statistical Association. All rights reserved.
Keywords: Biodiversity; Entropy; Partitioning
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Marcon, E., Traissac, S., Puech, F., & Lang, G. (2015). Tools to characterize point patterns: dbmss for R. Journal of Statistical Software, 67(Codesnippet3), 1–15.
Abstract: The dbmss package for R provides an easy-to-use toolbox to characterize the spatial structure of point patterns. Our contribution presents the state of the art of distance-based methods employed in economic geography and which are also used in ecology. Topographic functions such as Ripley’s K, absolute functions such as Duranton and Overman’s Kd and relative functions such as Marcon and Puech’s M are implemented. Their confidence envelopes (including global ones) and tests against counterfactuals are included in the package. © 2015, American Statistical Association. All rights reserved.
Keywords: Point patterns; R; Spatial structure
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Vincent, G., Molino, J. F., Marescot, L., Barkaoui, K., Sabatier, D., Freycon, V., et al. (2011). The relative importance of dispersal limitation and habitat preference in shaping spatial distribution of saplings in a tropical moist forest: a case study along a combination of hydromorphic and canopy disturbance gradients. Ann. For. Sci., 68(2), 357–370.
Abstract: Various processes contribute to shaping the local assemblage of species in hyperdiverse tropical forest. The relative contribution of environmental factors and dispersal limitation in determining the spatial distribution of saplings at local scale is unclear. We examined two types of environmental factors: (a) soil type reflecting drainage regime and (b) past logging damages reflecting light regime in a neotropical moist forest site. We used a logistic model to predict presence or absence of a given species in a network of elementary small plots. The effect of mapped environmental factors and a spatial correlation term were jointly estimated providing a direct measure of the relative role of habitat specialisation and dispersal limitation. At community level, dispersal limitation was the most important determinant of species absence at local scale. The two environmental factors examined played a balanced role. Different species however showed different degrees of dispersal limitation and habitat specialisation. The distribution of a large proportion of species-the majority of the most abundant species-was significantly affected by at least one environmental factor. We provide a ranking of 49 species sensitive to canopy disturbance (from shade specialist to pioneer) and 41 species affected by seasonal flooding (either positively or negatively).
Keywords: Species assemblage; Dispersal limitation; Tropical moist forest; Niche
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McLean, J. P., Zhang, T., Bardet, S., Beauchene, J., Thibaut, A., Clair, B., et al. (2011). The decreasing radial wood stiffness pattern of some tropical trees growing in the primary forest is reversed and increases when they are grown in a plantation. Ann. For. Sci., 68(4), 681–688.
Abstract: Background This study examines the radial trend in wood stiffness of tropical rainforest trees. The objective was to determine if the type of growing environment (exposed plantation or dense primary forest) would have an effect on this radial trend. Methods The axial elastic modulus of wood samples, representing a pith to bark cross-section, of six trees from several French Guianese species (two of Eperua falcata, one of Eperua grandiflora, two of Carapa procera and one of Symphonia gloubulifera) was measured using a dynamic “forced vibration” method. Results Primary forest trees were observed to have a decrease in wood stiffness from pith to bark, whereas plantation trees, from the same genus or species, displayed a corresponding increase in wood stiffness. Juvenile wood stiffness appears to vary depending on the environment in which the tree had grown. Conclusion We suggest that the growth strategy of primary forest trees is to produce wood resistant to self-buckling so that the height of the canopy may be obtained with the maximum of efficiency. In contrast, the growth strategy of the trees growing in an exposed plantation is to produce low-stiffness wood, important to provide flexibility in wind. Further experiments to study the behaviour of more species, with more individuals per species, growing across a range of physical environments, are required.
Keywords: Tropical trees; Growth strategy; Wood stiffness; Juvenile wood
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Stahl, C., Burban, B., Goret, J. Y., & Bonal, D. (2011). Seasonal variations in stem CO(2) efflux in the Neotropical rainforest of French Guiana. Ann. For. Sci., 68(4), 771–782.
Abstract: Introduction Stem CO(2) efflux (E (s)) is a significant component of total ecosystem respiration, but there is only scant information on seasonal variations in E (s) in tropical rainforests and on the main factors explaining these variations. Methods We conducted a comprehensive 18-month study in French Guiana to try to better understand which environmental factors contribute to seasonal variations in E (s) in two habitats differing in soil water conditions. Results In both habitats, large seasonal variations in E (s) were observed for most trees. The main variations occurred during climatic transition periods and were consistent with seasonal variations in soil and total ecosystem respiration. Discussion Seasonal variations in atmospheric conditions, including air temperature, did not explain seasonal variations in E (s). In contrast, seasonal variations in surface soil water content clearly induced seasonal variations in E (s) in each habitat. Both soil drought and flooded conditions induced a decrease in E (s). Conclusion Our results emphasize the need to integrate the influence of soil water content on E (s) into global models that simulate the response of forest ecosystem fluxes to climate changes.
Keywords: Tropical rainforest; Stem CO(2) efflux; Soil water content; Terra Firme forest; Seasonally flooded forest
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Niamke, F. B., Amusant, N., Charpentier, J. P., Chaix, G., Baissac, Y., Boutahar, N., et al. (2011). Relationships between biochemical attributes (non-structural carbohydrates and phenolics) and natural durability against fungi in dry teak wood (Tectona grandis L. f.). Ann. For. Sci., 68(1), 201–211.
Abstract: Introduction Non-structural carbohydrates and phenolic compounds are implicated in the natural durability of wood. In order to find the chemical traits of natural durability in teak wood, the radial distribution of phenolics compounds and non-structural carbohydrates were studied in trees ranked by contrasting natural durability class against Antrodia sp. Methods Non-structural carbohydrates were analyzed by spectrophotometry after enzymatic assays and phenolics compounds using HPLC. Results High concentrations of starch, sucrose, glucose, and fructose were found in the sapwood, whereas only trace amounts were found in the heartwood. In the sapwood, low concentrations of H1 (a hydroxycinnamic acid derivative) were specifically detected. Tectoquinone was also detected in the sapwood but its content increased dramatically in the heartwood. 2-(Hydroxymethyl) anthraquinone and P1, an unidentified compound, were only detected in the heartwood and at high concentrations (>3 mg equivalent 5-methoxyflavone g(-1) dry weight. Lower concentrations of 1,4-naphthoquinone, anthraquinone-2-carboxylic acid, and lapachol were also only detected in the heartwood. H1 and tectoquinone present in the sapwood could be considered as phenolic precursors of the synthesis of heartwood toxic phenolics in the heartwood. Conclusion Correlations between natural durability and chemical composition of heartwood (quinone derivatives, P1, and non-structural carbohydrates) suggest that P1, 2-(hydroxymethyl) anthraquinone and tectoquinone could be natural durability traits. Heartwood extractives,
Keywords: Tectona grandis; Teak heartwood; Phenolic compound; Non-structural carbohydrate; Natural durability
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Chartier, M., Gibernau, M., & Renner, S. S. (2014). The evolution of pollinator-plant interaction types in the araceae. Evolution, 68(5), 1533–1543.
Abstract: Most plant-pollinator interactions are mutualistic, involving rewards provided by flowers or inflorescences to pollinators. Antagonistic plant-pollinator interactions, in which flowers offer no rewards, are rare and concentrated in a few families including Araceae. In the latter, they involve trapping of pollinators, which are released loaded with pollen but unrewarded. To understand the evolution of such systems, we compiled data on the pollinators and types of interactions, and coded 21 characters, including interaction type, pollinator order, and 19 floral traits. A phylogenetic framework comes from a matrix of plastid and new nuclear DNA sequences for 135 species from 119 genera (5342 nucleotides). The ancestral pollination interaction in Araceae was reconstructed as probably rewarding albeit with low confidence because information is available for only 56 of the 120-130 genera. Bayesian stochastic trait mapping showed that spadix zonation, presence of an appendix, and flower sexuality were correlated with pollination interaction type. In the Araceae, having unisexual flowers appears to have provided the morphological precondition for the evolution of traps. Compared with the frequency of shifts between deceptive and rewarding pollination systems in orchids, our results indicate less lability in the Araceae, probably because of morphologically and sexually more specialized inflorescences. © 2013 The Society for the Study of Evolution.
Keywords: Ancestral state reconstruction; Inflorescence traits; Phylogeny; Pollination syndromes; Trap flowers
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Nirma, C., Eparvier, V., & Stien, D. (2015). Reactivation of antibiosis in the entomogenous fungus Chrysoporthe sp. SNB-CN74. Journal of Antibiotics, 68(9), 586–590.
Abstract: Chrysoporthe sp. SNB-CN74 was isolated from a Nasutitermes corniger nest, and its ethyl acetate extract was found to exhibit very strong antibacterial activity. Two antibacterial metabolites were isolated, (-)-R-skyrin (2) and (+)-rugulosin A (3). Eventually, the fungus lost its antibiotic potential when subcultured, and the use of yeast extract induced the re-expression of these two antibiotics. Yeast extract possibly activated a cryptic pathway by mimicking the presence of an ecological competitor. © 2015 Japan Antibiotics Research Association All rights reserved.
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