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Author Zinger, L.; Donald, J.; Brosse, S.; Gonzalez, M.A.; Iribar, A.; Leroy, C.; Murienne, J.; Orivel, J.; Schimann, H.; Taberlet, P.; Lopes, C.M. doi  openurl
  Title Advances and prospects of environmental DNA in neotropical rainforests Type Journal Article
  Year 2020 Publication Advances in Ecological Research Abbreviated Journal Adv. Ecol. Res.  
  Volume 62 Issue Pages 331-373  
  Keywords Biomonitoring; Conservation biology; DNA metabarcoding; eDNA; Environmental genomics; Neotropics; Rainforests  
  Abstract The rainforests of the Neotropics shelter a vast diversity of plant, animal and microscopic species that provide critical ecosystem goods and services for both local and worldwide populations. These environments face a major crisis due to increased deforestation, pollution, and climate change, emphasizing the need for more effective conservation efforts. The adequate monitoring of these ecosystems has proven a complex and time consuming endeavour, which depends on ever dwindling taxonomic expertise. To date, many species remain undiscovered, let alone described, with otherwise limited information regarding known species population distributions and densities. Overcoming these knowledge shortfalls and practical limitations is becoming increasingly possible through techniques based on environmental DNA (eDNA), i.e., DNA that can be obtained from environmental samples (e.g. tissues, soil, sediment, water, etc.). When coupled with high-throughput sequencing, these techniques now enable realistic, cost-effective, and standardisable biodiversity assessments. This opens up enormous opportunities for advancing our understanding of complex and species-rich tropical communities, but also in facilitating large-scale biomonitoring programs in the neotropics. In this review, we provide a brief introduction to eDNA methods, and an overview of their current and potential uses in both terrestrial and aquatic ecosystems of neotropical rainforests. We also discuss the limits and challenges of these methods for our understanding and monitoring of biodiversity, as well as future research and applied perspectives of these techniques in neotropical rainforests, and beyond. © 2020 Elsevier Ltd  
  Address Departamento de Zoologia, Instituto de Biociências, Universidade Estadual Paulista (UNESP), Rio Claro, SP, Brazil  
  Corporate Author Thesis  
  Publisher Academic Press Inc. Place of Publication Editor Dumbrell A.J.; Turner E.C.; Fayle T.M.  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title Advances in Ecological Research  
  Series Volume 62 Series Issue Edition  
  ISSN 00652504 (Issn); 9780128211342 (Isbn) ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 995  
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Author Vacher, Corinne ; Castagneyrol, Bastien ; Jousselin, Emmanuelle ; Schimann, Heidy doi  openurl
  Title Trees and Insects Have Microbiomes: Consequences for Forest Health and Management Type Journal Article
  Year 2021 Publication Current Forestry Reports Abbreviated Journal  
  Volume 7 Issue 2 Pages 81-96  
  Keywords  
  Abstract Purpose of Review Forest research has shown for a long time that microorganisms influence tree-insect interactions, but the complexity of microbial communities, as well as the holobiont nature of both trees and insect herbivores, has only recently been taken fully into account by forest entomologists and ecologists. In this article, we review recent findings on the effects of tree-insect-microbiome interactions on the health of tree individuals and discuss whether and how knowledge about tree and insect microbiomes could be integrated into forest health management strategies. We then examine the effects tree-insect-microbiome interactions on forest biodiversity and regeneration, highlighting gaps in our knowledge at the ecosystem scale. Recent Findings Multiple studies show that herbivore damage in forest ecosystems is clearly influenced by tripartite interactions between trees, insects and their microbiomes. Recent research on the plant microbiome indicates that microbiomes of planted trees could be managed at several stages of production, from seed orchards to mature forests, to improve the resistance of forest plantations to insect pests. Therefore, the tree microbiome could potentially be fully integrated into forest health management strategies. To achieve this aim, future studies will have to combine, as has long been done in forest research, holistic goals with reductionist approaches. Efforts should be made to improve our understanding of how microbial fluxes between trees and insects determine the health of forest ecosystems, and to decipher the underlying mechanisms, through the development of experimental systems in which microbial communities can be manipulated. Knowledge about tree-insect-microbiome interactions should then be integrated into spatial models of forest dynamics to move from small-scale mechanisms to forest ecosystem-scale predictions.  
  Address  
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  Publisher Springer Place of Publication Editor  
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  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 1059  
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Author Lamarre, G.P.A.; Mendoza, I.; Rougerie, R.; Decaëns, T.; Herault, B.; Bénéluz, F. doi  openurl
  Title Stay Out (Almost) All Night: Contrasting Responses in Flight Activity Among Tropical Moth Assemblages Type Journal Article
  Year 2015 Publication Neotropical Entomology Abbreviated Journal Neotropical Entomology  
  Volume 44 Issue 2 Pages 109-115  
  Keywords Behavior; diel activity; light trap; monitoring; moth; tropical forest  
  Abstract Variations in diel activity among hyperdiverse tropical communities of moths, despite representing a key component of niche partitioning between species, have barely been studied so far. Using light trapping from dawn to sunset over a 1-year period in French Guiana, we investigated these variations within and between two families of moths (Sphingidae and Saturniidae). Our results revealed contrasting patterns in flight activity at night between Sphingidae and Saturniidae. Sphingidae reached their peak in species richness and abundance between 7:00 and 8:00 p.m., followed by a decrease around 11:00 p.m. to midnight, whereas Saturniidae were continuously present throughout the night, with a peak around midnight. In addition, we found changes in diel activity among some of the most common genera in each family, highlighting distinct behavioral, physiological, and functional traits among taxa. Given differences in flight activity at different taxonomic levels, it is strongly recommended to monitor by light trapping throughout the night to effectively sample saturniid and sphingid assemblages, even though the activity of Sphingidae sharply declines after midnight. These results improve the general natural history information of tropical moths and reinforce the need of further research on the ecological and taxonomic consequences of differences in diel activity. © 2015, Sociedade Entomológica do Brasil.  
  Address Centre d’Ecologie Fonctionnelle et Evolutive, UMR 5175 CNRSMontpellier Cedex 5, France  
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  Notes Export Date: 9 April 2015 Approved no  
  Call Number EcoFoG @ webmaster @ Serial 592  
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Author Levionnois, Sébastien ; Ziegler, Camille ; Heuret, Patrick ; Jansen, Steven ; Stahl, Clément ; Calvet, Emma ; Goret, Jean-Yves ; Bonal, Damien ; Coste, Sabrina doi  openurl
  Title Is vulnerability segmentation at the leaf‑stem transition a drought resistance mechanism? A theoretical test with a trait‑based model for Neotropical canopy tree species Type Journal Article
  Year 2021 Publication Annals of Forest Science Abbreviated Journal  
  Volume 78 Issue 4 Pages 78-87  
  Keywords Neotropics, bark, canopy, capacitance, drought, drought tolerance, embolism, leaves, models, transpiration, trees, tropical rain forests, xylem  
  Abstract Leaf-stem vulnerability segmentation predicts lower xylem embolism resistance in leaves than stem. However, although it has been intensively investigated these past decades, the extent to which vulnerability segmentation promotes drought resistance is not well understood. Based on a trait-based model, this study theoretically supports that vulnerability segmentation enhances shoot desiccation time across 18 Neotropical tree species. CONTEXT: Leaf-stem vulnerability segmentation predicts lower xylem embolism resistance in leaves than stems thereby preserving expensive organs such as branches or the trunk. Although vulnerability segmentation has been intensively investigated these past decades to test its consistency across species, the extent to which vulnerability segmentation promotes drought resistance is not well understood. AIMS: We investigated the theoretical impact of the degree of vulnerability segmentation on shoot desiccation time estimated with a simple trait-based model. METHODS: We combined data from 18 tropical rainforest canopy tree species on embolism resistance of stem xylem (flow-centrifugation technique) and leaves (optical visualisation method). Measured water loss under minimum leaf and bark conductance, leaf and stem capacitance, and leaf-to-bark area ratio allowed us to calculate a theoretical shoot desiccation time (tcᵣᵢₜ). RESULTS: Large degrees of vulnerability segmentation strongly enhanced the theoretical shoot desiccation time, suggesting vulnerability segmentation to be an efficient drought resistance mechanism for half of the studied species. The difference between leaf and bark area, rather than the minimum leaf and bark conductance, determined the drastic reduction of total transpiration by segmentation during severe drought. CONCLUSION: Our study strongly suggests that vulnerability segmentation is an important drought resistance mechanism that should be better taken into account when investigating plant drought resistance and modelling vegetation. We discuss future directions for improving model assumptions with empirical measures, such as changes in total shoot transpiration after leaf xylem embolism.  
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  Publisher Springer Link Place of Publication Editor  
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  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 1034  
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Author Fouquet, A.; Dubut, V.; Hataway, R.; Scotti-Saintagne, C.; Scotti, I.; Noonan, B. doi  openurl
  Title Isolation and characterisation of 19 microsatellite loci from the Amazonian frog Adenomera andreae (Amphibia: Anura: Leptodactylidae) Type Journal Article
  Year 2009 Publication Conservation Genetics Resources Abbreviated Journal Conserv. Genet. Res.  
  Volume 1 Issue 1 Pages 217-220  
  Keywords Biomedicine  
  Abstract Nineteen novel microsatellite loci were isolated from Adenomera andreae, a widespread Amazonian frog considered to be a species complex. Three multiplex kits were optimized. Genetic diversity was assessed in 66 individuals sampled in three populations along the West of the Approuague River catchment (French Guiana). We also tested the multiplex kits in four other Adenomera and nine Leptodactylus species with 43.4 and 17.5% success respectively.  
  Address  
  Corporate Author Thesis  
  Publisher Springer Netherlands Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 1877-7252 ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ eric.marcon @ Serial 185  
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Author Boisse, P.; Aimene, Y.; Dogui, A.; Dridi, S.; Gatouillat, S.; Hamila, N.; Khan, M.A.; Mabrouki, T.; Morestin, F.; Vidal-Sallé, E. doi  openurl
  Title Hypoelastic, hyperelastic, discrete and semi-discrete approaches for textile composite reinforcement forming Type Journal Article
  Year 2010 Publication International Journal of Material Forming Abbreviated Journal  
  Volume 3 Issue Supplement 2 Pages 1229-1240  
  Keywords Textile composites Forming simulations Continuous/discrete approaches Hyperelasticity Hypoelasticity Semi-discrete finite element  
  Abstract The clear multi-scale structure of composite textile reinforcements leads to develop continuous and discrete approaches for their forming simulations. In this paper two continuous modelling respectively based on a hypoelastic and hyperelastic constitutive model are presented. A discrete approach is also considered in which each yarn is modelled by shell finite elements and where the contact with friction and possible sliding between the yarns are taken into account. Finally the semi-discrete approach is presented in which the shell finite element interpolation involves continuity of the displacement field but where the internal virtual work is obtained as the sum of tension, in-plane shear and bending ones of all the woven unit cells within the element. The advantages and drawbacks of the different approaches are discussed.  
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  Notes Hypoelastic, hyperelastic, discrete and semi-discrete approaches for textile composite reinforcement forming Approved no  
  Call Number EcoFoG @ eric.marcon @ 8 Serial 90  
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Author Malé, P.-J.G.; Leroy, C.; Lusignan, L.; Petitclerc, F.; Quilichini, A.; Orivel, J. doi  openurl
  Title The reproductive biology of the myrmecophyte, Hirtella physophora, and the limitation of negative interactions between pollinators and ants Type Journal Article
  Year 2015 Publication Arthropod-Plant Interactions Abbreviated Journal Arthropod-Plant Interactions  
  Volume 9 Issue 1 Pages 23-31  
  Keywords Ant-plant; Ant–pollinator interactions; Floral structure and display; Plant reproductive biology; Spatial and temporal segregation  
  Abstract Myrmecophytism occurs in plants that offer ants a nesting space and, often, food rewards in exchange for protection from predators and competitors. Such biotic protection by ants can, however, interfere with the activity of pollinators leading to potential negative consequences for the plant’s reproduction. In this study, we focused on the association between the understory myrmecophyte, Hirtella physophora (Chrysobalanaceae), and its obligate ant partner, Allomerus decemarticulatus (Myrmicinae). We investigated the reproductive biology of H. physophora and the putative mechanisms that may limit ant–pollinator conflict. Our results show that H. physophora is an obligate outcrosser, self-incompatible, and potentially insect-pollinated species. The reproduction of H. physophora relies entirely on pollen transfer by pollinators that are likely quite specific. Potential interference between flower-visiting insects during pollination may also be lessened by a spatial and temporal segregation of ant and pollinator activities, thus enabling pollen transfer and fruit production. © 2014, Springer Science+Business Media Dordrecht.  
  Address IRD, UMR AMAP (botAnique et bioinforMatique de l’Architecture des Plantes), Boulevard de la Lironde, TA A-51/PS2Montpellier Cedex 5, France  
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  Notes Export Date: 9 April 2015 Approved no  
  Call Number EcoFoG @ webmaster @ Serial 593  
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Author Lenoir, A.; Boulay, R.; Dejean, A.; Touchard, A.; Cuvillier-Hot, V. doi  openurl
  Title Phthalate pollution in an Amazonian rainforest Type Journal Article
  Year 2016 Publication Environmental Science and Pollution Research Abbreviated Journal  
  Volume 23 Issue 16 Pages 16865-16872  
  Keywords  
  Abstract Phthalates are ubiquitous contaminants and endocrine-disrupting chemicals that can become trapped in the cuticles of insects, including ants which were recognized as good bioindicators for such pollution. Because phthalates have been noted in developed countries and because they also have been found in the Arctic, a region isolated from direct anthropogenic influence, we hypothesized that they are widespread. So, we looked for their presence on the cuticle of ants gathered from isolated areas of the Amazonian rainforest and along an anthropogenic gradient of pollution (rainforest vs. road sides vs. cities in French Guiana). Phthalate pollution (mainly di(2-ethylhexyl) phthalate (DEHP)) was higher on ants gathered in cities and along road sides than on those collected in the pristine rainforest, indicating that it follows a human-mediated gradient of disturbance related to the use of plastics and many other products that contain phthalates in urban zones. Their presence varied with the ant species; the cuticle of Solenopsis saevissima traps higher amount of phthalates than that of compared species. However, the presence of phthalates in isolated areas of pristine rainforests suggests that they are associated both with atmospheric particles and in gaseous form and are transported over long distances by wind, resulting in a worldwide diffusion. These findings suggest that there is no such thing as a “pristine” zone.  
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  ISSN 1614-7499 ISBN Medium  
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  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Lenoir2016 Serial 700  
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Author Lenoir, A.; Touchard, A.; Devers, S.; Christidès, J.-P.; Boulay, R.; Cuvillier-Hot, V. doi  openurl
  Title Ant cuticular response to phthalate pollution Type Journal Article
  Year 2014 Publication Environmental Science and Pollution Research Abbreviated Journal Environ. Sci. Pollut. Res.  
  Volume 21 Issue 23 Pages 13446-13451  
  Keywords Absorption; Ants; Bbp; Bioindicator; Cuticle; Dbp; Dehp; DiBP; Phthalates; Pollutants  
  Abstract Phthalates are common atmospheric contaminants used in the plastic industry. Ants have been shown to constitute good bioindicators of phthalate pollution. Hence, phthalates remain trapped on ant cuticles which are mostly coated with long-chain hydrocarbons. In this study, we artificially contaminated Lasius niger ants with four phthalates: dibutyl phthalate (DBP), diisobutyl phthalate (DiBP), di(2-ethylhexyl) phthalate (DEHP), and benzyl butyl phthalate (BBP). The first three have previously been found on ants in nature in Touraine (France), while the fourth has not. The four phthalates disappeared rapidly (less than 5 days) from the cuticles of live ants. In contrast, on the cuticles of dead ants, DEHP quantities remained unchanged over time. These results indicate that phthalates are actively absorbed by the cuticles of live ants. Cuticular absorption of phthalates is nonspecific because eicosane, a nonnatural hydrocarbon on L. niger cuticle, was similarly absorbed. Ants are important ecological engineers and may serve as bioindicators of ecosystem health. We also suggest that ants and more generally terrestrial arthropods may contribute to the removal of phthalates from the local environment.  
  Address CNRS, UMR Écologie des Forêts de Guyane (EcoFoG), Campus Agronomique, BP 316Kourou Cedex, France  
  Corporate Author Thesis  
  Publisher Springer Verlag Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 09441344 (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Export Date: 5 December 2014; Coden: Esple; Correspondence Address: Lenoir, A.; IRBI, Institut de Recherche sur la Biologie de l’Insecte, UMR CNRS 7261, Université François RabelaisFrance Approved no  
  Call Number EcoFoG @ webmaster @ Serial 570  
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Author Urbina, I.; Grau, O.; Sardans, J.; Ninot, J.M.; Peñuelas, J. doi  openurl
  Title Encroachment of shrubs into subalpine grasslands in the Pyrenees changes the plant-soil stoichiometry spectrum Type Journal Article
  Year 2020 Publication Plant and Soil Abbreviated Journal Plant Soil  
  Volume 448 Issue 1-2 Pages 37-53  
  Keywords Nutrient stocks; Plant strategy; Plant-soil stoichiometry; Shrub encroachment; Subalpine grassland succession; aboveground biomass; biogeochemical cycle; carbon sequestration; ectomycorrhiza; fungus; grass; nitrogen; nutrient uptake; shrub; soil-vegetation interaction; stoichiometry; subalpine environment; succession; Europe; Pyrenees; Fungi  
  Abstract Aims: Shrub encroachment has been reported over a large proportion of the subalpine grasslands across Europe and is expected to have an important impact on the biogeochemical cycle of these ecosystems. We investigated the stoichiometric changes in the plant-soil system along the succession (e.g. increase in encroachment from unencroached grassland to mature shrubland) at two contrasting sites in the Pyrenees. Methods: We analyzed the chemical composition (C, N,15N, P, K, Ca, Mg and Fe) in the soil and in the aboveground plant compartments (leaves, leaf-litter and stems) of the main herbaceous species and shrubs at three contrasting stages of the succession: unencroached grassland, young shrubland and mature shrubland. Results: The plant-soil stoichiometry spectrum differed between the successional stages. Shrub encroachment generally increased the concentration of C and Ca and the C:N ratio and often reduced to concentrations of N, P and K in the leaves and leaf-litter, while several soil nutrient concentrations (N, P, K Ca and Mg) decreased. The stocks of C, N, P, Ca, and Mg in the total aboveground biomass increased with encroachment. Conclusions: Shrub encroachment favored the dominance of long-lived species with low concentrations of N and P in the plant-soil compartments, high C:nutrient ratios in the aboveground biomass and increase the uptake of N through ericoid or ectomycorrhizal fungi. We highlight the role of shrubs in the sequestration of C and nutrients through the allocation to the aboveground biomass. The changes in plant-soil elemental composition and stocks suggest a slowdown of the biogeochemical cycles in the subalpine mountain areas where shrub encroachment occurred. © 2020, Springer Nature Switzerland AG.  
  Address Biodiversity Research Institute (IRBio) and Department of Evolutionary Biology, Ecology and Environmental Sciences, University of Barcelona, Barcelona, Catalonia, Spain  
  Corporate Author Thesis  
  Publisher Springer Place of Publication Editor  
  Language Summary Language Original Title  
  Series Editor Series Title Abbreviated Series Title  
  Series Volume Series Issue Edition  
  ISSN 0032079x (Issn) ISBN Medium  
  Area Expedition Conference  
  Notes Approved no  
  Call Number EcoFoG @ webmaster @ Serial 983  
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