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Kiaer, L.P.; Felber, F.; Flavell, A.; Guadagnuolo, R.; Guiatti, D.; Hauser, T.P.; Olivieri, A.M.; Scotti, I.; Syed, N.; Vischi, M.; van de Wiel, C.; Jorgensen, R.B. |
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Title  |
Spontaneous gene flow and population structure in wild and cultivated chicory, Cichorium intybus L |
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Journal Article |
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Year |
2009 |
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Genetic Resources and Crop Evolution |
Abbreviated Journal |
Genet. Resour. Crop Evol. |
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56 |
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3 |
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405-419 |
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AFLP; GM co-existence; Gene dispersal; Introgression; Risk assessment; SSAP |
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Spontaneous gene flow between wild and cultivated chicory, Cichorium intybus L., may have implications for the genetic structure and evolution of populations and varieties. One aspect of this crop-wild gene flow is the dispersal of transgenes from genetically modified varieties, e.g. gene flow from GM chicory to natural chicory could have unwanted consequences. With the purpose to identify and quantify crop-wild gene flow in chicory, we analysed introgression in 19 wild chicory populations and 16 accessions of chicory varieties and landraces distributed across Northern, Central and Mediterranean Europe. The analysis used 281 AFLP markers and 75 SSAP markers giving a total of 356 polymorphic markers. Results from model based assignments with the program STRUCTURE indicated many incidents of recent gene flow. Gene flow was observed both between cultivars and wild populations, between landraces and wild populations, between different wild populations as well as between cultivars. Population structure visualized by distance-based clustering showed a North-South geographical structuring of the wild populations, and a general grouping of the cultivars corresponding to known origin. The results indicated, however, that the structuring between the two groups of wild and cultivated types was weak. As crop and wild recipients are genetically close and genes are transferred between the two types rather frequently, focus on mitigating crop-wild gene flow should be increased, before transgenic varieties are cultivated openly. |
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[Kiaer, L. P.; Jorgensen, R. B.] DTU, Riso Natl Lab, Biosyst Dept, DK-4000 Roskilde, Denmark, Email: rikke.bagger.jorgensen@risoe.dk |
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0925-9864 |
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ISI:000264835300011 |
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EcoFoG @ eric.marcon @ |
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204 |
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Vedel, V.; Lalague, H. |
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Standardized sampling protocol for spider community assessment in the Neotropical rainforest |
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Journal Article |
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2013 |
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Journal of Entomology and Zoology Studies |
Abbreviated Journal |
J. Entomol. Zool. Stud. |
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2 |
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1 |
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18-34 |
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Araneae; Biodiversity; French Guiana; Guianese Shield; Impact Assessment |
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We described, here, a standardized protocol to collect the maximum number of spiders per unit of effort from the different strata of a tropical forestry habitat. This would allow quantifying the richness of a site and would allow spatial and temporal comparisons between sites. This protocol was tested and applied in a pilot study at four sites representing three different forestry habitats of the natural reserve of La Trinité (French Guiana). Results showed every feeding guild was well represented and most of the 30 families found are represented by several individuals. Indices of species richness, number of singletons, species richness estimators from the accumulation curves and diversity and similarity indices were also calculated and all indicated that La Trinité is a rich and diverse site for spiders. The standardized protocol showed here its efficiency and its wide cover of micro-habitats and is, therefore, recommended for any impact assessment or diversity of spider study in tropical forestry environment. |
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EcoFoG @ webmaster @ |
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487 |
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Lamarre, G.P.A.; Mendoza, I.; Rougerie, R.; Decaëns, T.; Herault, B.; Bénéluz, F. |
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Title |
Stay Out (Almost) All Night: Contrasting Responses in Flight Activity Among Tropical Moth Assemblages |
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Journal Article |
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2015 |
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Neotropical Entomology |
Abbreviated Journal |
Neotropical Entomology |
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44 |
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2 |
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109-115 |
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Behavior; diel activity; light trap; monitoring; moth; tropical forest |
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Variations in diel activity among hyperdiverse tropical communities of moths, despite representing a key component of niche partitioning between species, have barely been studied so far. Using light trapping from dawn to sunset over a 1-year period in French Guiana, we investigated these variations within and between two families of moths (Sphingidae and Saturniidae). Our results revealed contrasting patterns in flight activity at night between Sphingidae and Saturniidae. Sphingidae reached their peak in species richness and abundance between 7:00 and 8:00 p.m., followed by a decrease around 11:00 p.m. to midnight, whereas Saturniidae were continuously present throughout the night, with a peak around midnight. In addition, we found changes in diel activity among some of the most common genera in each family, highlighting distinct behavioral, physiological, and functional traits among taxa. Given differences in flight activity at different taxonomic levels, it is strongly recommended to monitor by light trapping throughout the night to effectively sample saturniid and sphingid assemblages, even though the activity of Sphingidae sharply declines after midnight. These results improve the general natural history information of tropical moths and reinforce the need of further research on the ecological and taxonomic consequences of differences in diel activity. © 2015, Sociedade Entomológica do Brasil. |
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Centre d’Ecologie Fonctionnelle et Evolutive, UMR 5175 CNRSMontpellier Cedex 5, France |
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Export Date: 9 April 2015 |
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EcoFoG @ webmaster @ |
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592 |
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Almeras, T.; Yoshida, M.; Okuyama, T. |
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Title |
Strains inside xylem and inner bark of a stem submitted to a change in hydrostatic pressure |
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Journal Article |
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Year |
2006 |
Publication |
Trees-Structure and Function |
Abbreviated Journal |
Trees-Struct. Funct. |
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20 |
Issue |
4 |
Pages |
460-467 |
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diurnal strains; hydrostatic pressure; xylem; inner bark; mechanical properties |
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Tangential strains were measured with strain gauges at the surface of xylem and inner bark of saplings of Cryptomeria japonica D. Don. and Fagus silvatica L. during a pressurization test. The test consists in submitting the whole sapling to an artificially imposed hydrostatic pressure of increasing magnitude. The elastic response of the stems was found linear both at the surface of xylem and inner bark. A simple geometric model allows to compute radial strains in each tissue from tangential strain data. Inside inner bark, radial strains are much larger than tangential strains, because tangential strains are restrained by the core of wood. The material compliance of each tissue was computed as the ratio between the radial strain and the pressure that caused it. The material compliance of xylem is much lower than that of inner bark, but, as its thickness is much larger, its contribution to the apparent behavior of the stem is not negligible. Computation of material compliances by this pressurization test provides information about the specific behavior of each tissue in response to hydrostatic pressure. This can be used to estimate and interpret the calibration factor linking the water status of the plant to the apparent strain measured at its surface. |
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Nagoya Univ, Grad Sch Bioagr Sci, Lab Biomat Phys, Chikusa Ku, Nagoya, Aichi 4648601, Japan, Email: t_almeras@hotmail.com |
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SPRINGER |
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0931-1890 |
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ISI:000237858100007 |
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no |
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EcoFoG @ eric.marcon @ |
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225 |
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Peay, K.G.; Baraloto, C.; Fine, P.V.A. |
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Title |
Strong coupling of plant and fungal community structure across western Amazonian rainforests |
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Journal Article |
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2013 |
Publication |
ISME Journal |
Abbreviated Journal |
Isme J. |
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7 |
Issue |
9 |
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1852-1861 |
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coexistence; diversity; Janzen-Connell; natural enemies; negative feedback |
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The Amazon basin harbors a diverse ecological community that has a critical role in the maintenance of the biosphere. Although plant and animal communities have received much attention, basic information is lacking for fungal or prokaryotic communities. This is despite the fact that recent ecological studies have suggested a prominent role for interactions with soil fungi in structuring the diversity and abundance of tropical rainforest trees. In this study, we characterize soil fungal communities across three major tropical forest types in the western Amazon basin (terra firme, seasonally flooded and white sand) using 454 pyrosequencing. Using these data, we examine the relationship between fungal diversity and tree species richness, and between fungal community composition and tree species composition, soil environment and spatial proximity. We find that the fungal community in these ecosystems is diverse, with high degrees of spatial variability related to forest type. We also find strong correlations between α- and β-diversity of soil fungi and trees. Both fungal and plant community β-diversity were also correlated with differences in environmental conditions. The correlation between plant and fungal richness was stronger in fungal lineages known for biotrophic strategies (for example, pathogens, mycorrhizas) compared with a lineage known primarily for saprotrophy (yeasts), suggesting that this coupling is, at least in part, due to direct plant-fungal interactions. These data provide a much-needed look at an understudied dimension of the biota in an important ecosystem and supports the hypothesis that fungal communities are involved in the regulation of tropical tree diversity. © 2013 International Society for Microbial Ecology. |
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Department of Integrative Biology, University of California, Berkeley, CA, United States |
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17517362 (Issn) |
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Export Date: 9 September 2013; Source: Scopus; doi: 10.1038/ismej.2013.66; Language of Original Document: English; Correspondence Address: Peay, K.G.; Department of Biology, Stanford University, 371 Serra Mall, Stanford, CA 94305, United States; email: kpeay@stanford.edu; Funding Details: 1045658, NSF, National Science Foundation; Funding Details: DEB-0743800/0743103, NSF, National Science Foundation |
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EcoFoG @ webmaster @ |
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502 |
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Roux, O.; Vantaux, A.; Petitclerc, F.; Orivel, J.; Dejean, A.; Billen, J. |
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Structural adaptations and mechanism of reflex bleeding in the larvae of the myrmecophilous ladybird Diomus thoracicus |
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Journal Article |
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2017 |
Publication |
Arthropod Structure and Development |
Abbreviated Journal |
Arthropod Structure and Development |
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46 |
Issue |
4 |
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529-536 |
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3D reconstruction; Coccinellidae; Myrmecophagous insect; Reflex bleeding; Ultrastructure |
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Reflex bleeding is an effective defensive mechanism against predators. When attacked, some insects emit hemolymph, which coagulates, quickly entangling their aggressor. Bleeding occurs at weak intersegmental membranes or through dedicated organs, which can be associated or not with glandular cells. Here, we describe the behavior and morphological structures involved in reflex bleeding in the larvae of the ladybird, Diomus thoracicus, which are intranidal parasites of the ant Wasmannia auropunctata. The larvae are tolerated by the ants thanks to odor mimicry, but some rare aggressive ant behaviors were observed that trigger reflex bleeding both at a pair of thoracic tubercles and a pair of posterodorsal abdominal humps. No glandular structure was found in association with these emission points, which suggests that the material emitted was hemolymph only. A 3D reconstruction suggested that reflex bleeding seems to be controlled by muscles whose contraction increases the internal hydrostatic pressure and pushes the hemolymph into a funnel-like structure with an opening to the outside. In D. thoracicus, the morphological structures involved in reflex bleeding are among the most complex and prominent described to date. © 2017 Elsevier Ltd |
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KU Leuven, Zoological Institute, Naamsestraat 59, box 2466, Leuven, Belgium |
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Export Date: 18 December 2017 |
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EcoFoG @ webmaster @ |
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778 |
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Jabiol, J.; Corbara, B.; Dejean, A.; Cereghino, R. |
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Structure of aquatic insect communities in tank-bromeliads in a East-Amazonian rainforest in French Guiana |
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Journal Article |
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2009 |
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Forest Ecology and Management |
Abbreviated Journal |
For. Ecol. Manage. |
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257 |
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1 |
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351-360 |
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Bromeliaceae; Classification; Community structure; Insects; Microcosms; Neural networks; Nouragues; Phytotelmata; Species richness |
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Tank-bromeliads are discrete habitats which contain distinct aquatic communities, and which commonly occur in the neotropics. Because they span a broad range of ecological gradients in terms of habitat structure and amount of resources, researchers study the associations between the biodiversity of communities and these gradients in rainforests, where the very high species richness and densities within other continuous habitats makes it difficult to quantify animal communities. We analysed the diversity of aquatic insect communities in relation to different tank-bromeliad species in a primary rainforest (French Guiana) using artificial intelligence and complex optimization techniques to classify communities and model their determinants. First, the self-organizing map (neural network) was used to classify 158 bromeliads according to the quantitative structure of the insect communities. Catopsis berteroniana and Guzmania lingulata formed separate clusters of plants on the virtual map, while Vriesea splendens, Vriesea pleiosticha and Aechmea melinonii were grouped together in the remaining clusters. Some insect taxa occurred in all bromeliads, while other taxa were specific to a given species. Second, general linear modelling allowed us to specify the influence of the bromeliad species; water volume and volume of fine particulate organic matter inside of the tank; elevation above the ground; and sampling site on taxonomic richness and insect abundance. The number of taxa and individuals per plant increased with greater water volume, but the slope of the relationships depended on the bromeliad species. The significant influence of bromeliad species suggested that at similar water volumes different plant species had different taxon richness and insect abundance. Greater amounts of fine particulate organic matter were detrimental to community diversity in the tanks, probably because they decreased available space by clogging it and/or affected oxygen concentrations. The influence of tank-bromeliad species on the aquatic insect community was primarily related to their physical (and probably chemical) features rather than to species-specific associations sensu stricto. The classification of bromeliads with respect to animal species is likely to provide referential schemes for those biodiversity patterns to be expected under certain conditions, and may help to target model communities for subsequent experimental research. (C) 2008 Elsevier B,V. All rights reserved. |
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[Jabiol, J.; Cereghino, R.] Univ Toulouse 3, Ecolab, Lab Ecol Fonctionnelle, CNRS,UMR 5245, F-31062 Toulouse 9, France, Email: cereghin@cict.fr |
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ELSEVIER SCIENCE BV |
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0378-1127 |
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ISI:000261856000038 |
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EcoFoG @ eric.marcon @ |
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124 |
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Liu, S.Q.; Loup, C.; Gril, J.; Dumonceaud, O.; Thibaut, A.; Thibaut, B. |
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Studies on European beech (Fagus sylvatica L.). Part 1: Variations of wood colour parameters |
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Journal Article |
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2005 |
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Annals of Forest Science |
Abbreviated Journal |
Ann. For. Sci. |
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62 |
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7 |
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625-632 |
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Fagus sylvatica L.; CIELab colour system; solid wood; red heartwood |
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Colour parameters of European beech were measured using CIELab system. 103 logs from 87 trees in 9 sites were cut into boards to study the radial variations of wood colour parameters. Both site and tree effects on colour were observed. Patterns of red heartwood occurrence were defined. When excepting red heartwood there was still a highly significant effect of site and tree. Axial and radial variations were small, except very near the pith or in red heartwood, suggesting possible early selection at periphery under colour criteria. Red heartwood is darker, redder and more yellow than normal peripheral wood. |
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Univ Montpellier 2, Lab Mecan & Genie Civil, F-34095 Montpellier, France, Email: jgril@lmgc.univ-montp2.fr |
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EDP SCIENCES S A |
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1286-4560 |
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ISI:000233179100003 |
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EcoFoG @ eric.marcon @ |
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251 |
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Do, N.A.; Dias, D.; Zhang, Z.; Huang, X.; Nguyen, T.T.; Pham, V.V.; Nait-Rabah, O. |
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Study on the behavior of squared and sub-rectangular tunnels using the Hyperstatic Reaction Method |
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Journal Article |
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2020 |
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Transportation Geotechnics |
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Transp. Geotech. |
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22 |
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100321 |
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Finite element method; Lining; Squared shape; Sub-rectangular shape; Tunnel; efficiency measurement; finite element method; numerical model; transportation development; transportation planning; tunnel design; tunnel lining |
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Saint-Petersburg Mining University, Russian Federation |
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Elsevier Ltd |
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22143912 (Issn) |
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EcoFoG @ webmaster @ |
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915 |
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Paine, C.E.T.; Harms, K.E.; Ramos, J. |
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Supplemental irrigation increases seedling performance and diversity in a tropical forest |
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Journal Article |
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2009 |
Publication |
Journal of Tropical Ecology |
Abbreviated Journal |
J. Trop. Ecol. |
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25 |
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171-180 |
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diversity; Estacion Biologica Los Amigos; habitat filtering; palms; Peru; precipitation; seasonality; seedling recruitment |
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Diversity is positively correlated with water availability at global, continental and regional scales. With the objective of better understanding the mechanisms that drive these relationships. we investigated the degree to which variation in water availability affects the performance (recruitment, growth a rid survival) of juvenile trees. Precipitation was supplemented throughout two dry seasons in a seasonal moist forest in south-eastern Peru. Supplementing precipitation by 160 mm mo(-1), we increased soil moisture by 17%. To generate seedling communities or known species composition, we sowed 3840 seeds of 12 species. We monitored the fates of the 554 seedlings recruited from the sown seeds. as well as 1856 older non-sown seedlings (10 cm <= height < 50 cm), and 2353 saplings (> 1 m tall). Watering significantly enhanced young seedling growth and survival, increasing stern density and diversity. Watering diminished the recruitment of species associated with upland forests, but increased the survival of both upland- and lowland-associated species. Though supplemental watering increased the growth of older seedlings. their density and diversity were unaffected. Sapling performance was insensitive to watering. We infer that variation in dry-season water availability may affect seedling community structure by differentially affecting recruitment and increasing overall survival. These results suggest that differential seedling recruitment and survival may contribute to the observed relationships between water availability, habitat associations and patterns of tree species richness. |
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[Paine, C. E. Timothy; Harms, Kyle E.] Louisiana State Univ, Dept Biol Sci, Baton Rouge, LA 70803 USA, Email: timothy.paine@ecofog.gf |
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CAMBRIDGE UNIV PRESS |
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0266-4674 |
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ISI:000264212400006 |
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EcoFoG @ eric.marcon @ |
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118 |
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