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Talaga, S., Murienne, J., Dejean, A., & Leroy, C. (2015). Online database for mosquito (Diptera, Culicidae) occurrence records in French guiana. ZooKeys, 2015(532), 107–115.
Abstract: A database providing information on mosquito specimens (Arthropoda: Diptera: Culicidae) collected in French Guiana is presented. Field collections were initiated in 2013 under the auspices of the CEnter for the study of Biodiversity in Amazonia (CEBA: http://www.labexceba.fr/en/). This study is part of an ongoing process aiming to understand the distribution of mosquitoes, including vector species, across French Guiana. Occurrences are recorded after each collecting trip in a database managed by the laboratory Evolution et Diversité Biologique (EDB), Toulouse, France. The dataset is updated monthly and is available online. Voucher specimens and their associated DNA are stored at the laboratory Ecologie des Forêts de Guyane (Ecofog), Kourou, French Guiana. The latest version of the dataset is accessible through EDB’s Integrated Publication Toolkit at http://130.120.204.55:8080/ipt/resource.do?r=mosquitoesof french_guiana or through the Global Biodiversity Information Facility data portal at http://www.gbif.org/ dataset/5a8aa2ad-261c-4f61-a98e-26dd752fe1c5 It can also be viewed through the Guyanensis platform at http://guyanensis.ups-tlse.fr © Stanislas Talaga et al.
Keywords: Diversity; French guiana; Mosquitoes; Neotropics; Occurrence
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Dejean, A., Djieto-Lordon, C., Cereghino, R., & Leponce, M. (2008). Ontogenetic succession and the ant mosaic: An empirical approach using pioneer trees. Basic Appl. Ecol., 9(3), 316–323.
Abstract: Arboreal ant mosaics have been intensively investigated, but what generates these mosaics remains poorly understood. In this paper, we hypothesize that the dynamics of arboreal ant mosaics could be better understood by examining the ontogenetic succession of ants in tropical trees. We used three African pioneer tree species as biological models. Lophira alata (Ochnaceae) is a long-lived species that does not furnish any reward (i.e., extra-floral nectaries [EFNs], shelter) to ants, Anthocleista vogelii (Gentianaceae) bears extremely well-developed EFNs, and Barteria fistulosa (Passifloraceae) is a long-lived myrmecophyte providing both EFNs and domatia. For both L. alata and A. vogelii, we noted a succession of different associated ants as the plants grew and aged. Ground-nesting, arborealforaging ant species were the first associates, followed by arboreal species that build nests with the leaves of their host trees, together with some species nesting opportunistically in pre-existing cavities. Carton-building Crematogaster species were the last in this succession. The presence of EFNs on A. vogelii slows species turnover, demonstrating that the plant exerts some control over its ant associates. The comparison with B. fistulosa, which generally remains associated with the same plant-ant species during its entire ontogeny, highlights the importance of the selective attractiveness of the trees for their associated ants – or, perhaps, the existence of plant filters that screen arriving ants. (C) 2007 Gesellschaft fur Okologie. Published by Elsevier GmbH. All rights reserved.
Keywords: ant-plant relationships; dynamics of associations; myrmecophytes; species turnover; tropical rainforests
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Aimene, Y., Dorville, R., & Omrane, A. (2013). Optimal control for trees trunk diameter estimation in rain forest ecology. Applied Mathematical Sciences, 7(17-20), 807–816.
Abstract: We study the optimal control question for an important mechanical problem related to tree trunk diameter variation in tropical forest ecology where some data are missing. Within a cost function, the control problem is formulated with a mechanical model that requires boundary conditions tosolve all equations. We give a characterization of the optimal measurement function for the tree trunk problem.
Keywords: Missing data; Optimal control; Tree trunk diameter
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Piponiot, C., Rutishauser, E., Derroire, G., Putz, F. E., Sist, P., West, T. A. P., et al. (2019). Optimal strategies for ecosystem services provision in Amazonian production forests. Environmental Research Letters, 14(12), 124090.
Abstract: Although tropical forests harbour most of the terrestrial carbon and biological diversity on Earth they continue to be deforested or degraded at high rates. In Amazonia, the largest tropical forest on Earth, a sixth of the remaining natural forests is formally dedicated to timber extraction through selective logging. Reconciling timber extraction with the provision of other ecosystem services (ES) remains a major challenge for forest managers and policy-makers. This study applies a spatial optimisation of logging in Amazonian production forests to analyse potential trade-offs between timber extraction and recovery, carbon storage, and biodiversity conservation. Current logging regulations with unique cutting cycles result in sub-optimal ES-use efficiency. Long-term timber provision would require the adoption of a land-sharing strategy that involves extensive low-intensity logging, although high transport and road-building costs might make this approach economically unattractive. By contrast, retention of carbon and biodiversity would be enhanced by a land-sparing strategy restricting high-intensive logging to designated areas such as the outer fringes of the region. Depending on management goals and societal demands, either choice will substantially influence the future of Amazonian forests. Overall, our results highlight the need for revaluation of current logging regulations and regional cooperation among Amazonian countries to enhance coherent and trans-boundary forest management.
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Paine, C. E. T., Baraloto, C., & Díaz, S. (2015). Optimal strategies for sampling functional traits in species-rich forests. Functional Ecology, 29(10), 1325–1331.
Abstract: Functional traits provide insight into a variety of ecological questions, yet the optimal sampling method to estimate the community-level distribution of plant functional trait values remains a subject of debate, especially in species-rich forests. We present a simulation analysis of the trait distribution of a set of nine completely sampled permanent plots in the lowland rain forests of French Guiana. Increased sampling intensity consistently improved accuracy in estimating community-weighted means and variances of functional trait values, whereas there was substantial variation among functional traits and minor differences among sampling strategies. Thus, investment in intensified sampling yields a greater improvement in the accuracy of estimation than does an equivalent investment in sampling design complication. Notably, 'taxon-free' strategies frequently had greater accuracy than did abundance-based strategies, which had the additional cost of requiring botanical surveys. We conclude that there is no substitute for extensive field sampling to accurately characterize the distribution of functional trait values in species-rich forests. © 2015 British Ecological Society.
Keywords: French Guiana; Functional traits; Plant traits; Sampling design; Specific leaf area; Tropical forest; Wood density
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Cantera, I., Cilleros, K., Valentini, A., Cerdan, A., Dejean, T., Iribar, A., et al. (2019). Optimizing environmental DNA sampling effort for fish inventories in tropical streams and rivers. Sci. Rep., 9, 3085.
Abstract: Environmental DNA (eDNA) metabarcoding is a promising tool to estimate aquatic biodiversity. It is based on the capture of DNA from a water sample. The sampled water volume, a crucial aspect for efficient species detection, has been empirically variable (ranging from few centiliters to tens of liters). This results in a high variability of sampling effort across studies, making comparisons difficult and raising uncertainties about the completeness of eDNA inventories. Our aim was to determine the sampling effort (filtered water volume) needed to get optimal inventories of fish assemblages in species-rich tropical streams and rivers using eDNA. Ten DNA replicates were collected in six Guianese sites (3 streams and 3 rivers), resulting in sampling efforts ranging from 17 to 340 liters of water. We show that sampling 34 liters of water detected more than 64% of the expected fish fauna and permitted to distinguish the fauna between sites and between ecosystem types (stream versus rivers). Above 68 liters, the number of detected species per site increased slightly, with a detection rate higher than 71%. Increasing sampling effort up to 340 liters provided little additional information, testifying that filtering 34 to 68 liters is sufficient to inventory most of the fauna in highly diverse tropical aquatic ecosystems. © 2019, The Author(s).
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Mathieu, A., Letort, V., Cournède, P. H., Zhang, B. G., Heuret, P., & De Reffye, P. (2012). Oscillations in functional structural plant growth models. Mathematical Modelling of Natural Phenomena, 7(6), 47–66.
Abstract: The dynamic model of plant growth GreenLab describes plant architecture and functional growth at the level of individual organs. Structural development is controlled by formal grammars and empirical equations compute the amount of biomass produced by the plant, and its partitioning among the growing organs, such as leaves, stems and fruits. The number of organs initiated at each time step depends on the trophic state of the plant, which is evaluated by the ratio of biomass available in plant to the demand of all the organs. The control of the plant organogenesis by this variable induces oscillations in the simulated plant behaviour. The mathematical framework of the GreenLab model allows to compute the conditions for the generation of oscillations and the value of the period according to the set of parameters. Two case-studies are presented, corresponding to emergence of oscillations associated to fructification and branching. Similar alternating patterns are commonly reported by botanists. In this article, two examples were selected: alternate patterns of fruits in cucumber plants and alternate appearances of branches in Cecropia trees. The model was calibrated from experimental data collected on these plants. It shows that a simple feedback hypothesis of trophic control on plant structure allows the emergence of cyclic patterns corresponding to the observed ones. © EDP Sciences, 2012.
Keywords: Cecropia trees; Cucumber plant; Dynamic system of plant growth; Functional-structural plant models; GreenLab
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Ferrer, A., Dixon, A. F., Gibernau, M., & Hemptinne, J. L. (2010). Ovarian dynamics and specialisation in ladybirds. Ecol. Entomol., 35(1), 100–103.
Abstract: 2. This hypothesis was tested by comparing a generalist and a specialist ladybird species belonging to the same genus. 3. A resorption index was calculated for females of both species subjected to several starvation regimes. This index indicated that over a period of fasting of 3 days, the intensity of resorption was greater in the generalist than the specialist. When food was again supplied, oogenesis resumed and within 1 day was faster in the generalist than in the specialist. 4. As predicted, the resorption of oocytes and replenishment occurred faster in the generalist than in the specialist species. This is the first time, to our knowledge, that the speed and intensity of the ovarian dynamics of a predatory insect have been linked to its way of life.
Keywords: Ladybird beetles; oocyte resorption; ovarian dynamics; specialisation
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Ogeron, C., Odonne, G., Cristinoi, A., Engel, J., Grenand, P., Beauchene, J., et al. (2018). Palikur traditional roundwood construction in eastern French Guiana: Ethnobotanical and cultural perspectives. Journal of Ethnobiology and Ethnomedicine, 14(28).
Abstract: Background: Palikur Amerindians live in the eastern part of French Guiana which is undergoing deep-seated changes due to the geographical and economic opening of the region. So far, Palikur's traditional ecological knowledge is poorly documented, apart from medicinal plants. The aim of this study was to document ethnobotanical practices related to traditional construction in the region. Methods: A combination of qualitative and quantitative methods was used. Thirty-nine Palikur men were interviewed in three localities (Saint-Georges de l'Oyapock, Regina and Trois-Palétuviers) between December 2013 and July 2014. Twenty-four inventories of wood species used in traditional buildings were conducted in the villages, as well as ethnobotanical walks in the neighboring forests, to complete data about usable species and to determine Linnaean names. Results: After an ethnographic description of roundwood Palikur habitat, the in situ wood selection process of Palikur is precisely described. A total of 960 roundwood pieces were inventoried in situ according to Palikur taxonomy, of which 860 were beams and rafters, and 100 posts in 20 permanent and 4 temporary buildings. Twenty-seven folk species were identified. Sixty-three folk species used in construction were recorded during ethnobotanical walks. They correspond to 263 botanical species belonging to 25 families. Posts in permanent buildings were made of yawu (Minquartia guianensis) (51%) and wakap (Vouacapoua americana) (14%). Beams and rafters were made of wood from Annonaceae (79%) and Lecythidaceae (13%) families. The most frequently used species were kuukumwi priye (Oxandra asbeckii), kuukumwi seyne (Pseudoxandra cuspidata), and pukuu (Xylopia nitida and X. cayennensis). Conclusions: Although the Palikur's relationship with their habitat is undergoing significant changes, knowledge about construction wood is still very much alive in the Oyapock basin. Many people continue to construct traditional buildings alongside modern houses, using a wide array of species described here for the first time, along with the techniques used.
Keywords: Amazonia; Annonaceae; Architecture; Non-timber forest products; Oyapock; Palikur; Sapotaceae; Traditional technological knowledge
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Wagner, F., Rossi, V., Aubry-Kientz, M., Bonal, D., Dalitz, H., Gliniars, R., et al. (2014). Pan-tropical analysis of climate effects on seasonal tree growth. PLoS ONE, 9(3), e92337.
Abstract: Climate models predict a range of changes in tropical forest regions, including increased average temperatures, decreased total precipitation, reduced soil moisture and alterations in seasonal climate variations. These changes are directly related to the increase in anthropogenic greenhouse gas concentrations, primarily CO2. Assessing seasonal forest growth responses to climate is of utmost importance because woody tissues, produced by photosynthesis from atmospheric CO2, water and light, constitute the main component of carbon sequestration in the forest ecosystem. In this paper, we combine intra-annual tree growth measurements from published tree growth data and the corresponding monthly climate data for 25 pan-tropical forest sites. This meta-analysis is designed to find the shared climate drivers of tree growth and their relative importance across pan-tropical forests in order to improve carbon uptake models in a global change context. Tree growth reveals significant intra-annual seasonality at seasonally dry sites or in wet tropical forests. Of the overall variation in tree growth, 28.7% was explained by the site effect, i.e. the tree growth average per site. The best predictive model included four climate variables: precipitation, solar radiation (estimated with extrasolar radiation reaching the atmosphere), temperature amplitude and relative soil water content. This model explained more than 50% of the tree growth variations across tropical forests. Precipitation and solar radiation are the main seasonal drivers of tree growth, causing 19.8% and 16.3% of the tree growth variations. Both have a significant positive association with tree growth. These findings suggest that forest productivity due to tropical tree growth will be reduced in the future if climate extremes, such as droughts, become more frequent. © 2014 Wagner et al.
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