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Porth, I.; Scotti-Saintagne, C.; Barreneche, T.; Kremer, A.; Burg, K. |
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Title  |
Linkage mapping of osmotic stress induced genes of oak |
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Journal Article |
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Year |
2005 |
Publication |
Tree Genetics and Genomes |
Abbreviated Journal |
Tree Genet. Genomes |
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Volume |
1 |
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1 |
Pages |
31-40 |
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Est; Linkage map; Oak; Osmotic stress; Quercus ssp.; Fagaceae; Quercus; Quercus petraea; Quercus robur |
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Abstract |
Water stress affecting long-lived trees is an important challenge in forestry. Due to global climate change, forest trees will be threatened by extreme conditions like flooding or drought. It is necessary to understand differences in stress tolerance within certain species and to investigate putative relations on genomic level. In this study, osmotic stress induced genes of Quercus ssp. were positioned on two genetic linkage maps of oak. An intra-specific cross 3P*A4 of Quercus robur consisting of 88 offspring and an inter-specific cross 11P*QS29 of Q. robur and Q. petraea comprising 72 full-sibs were analyzed for the inheritance of 14 loci represented by 34 individual single nucleotide polymorphisms. Seven genes in the intra-cross, as well as other six genes in the inter-cross could be mapped and one gene could not be localised due to the severe distortion of the segregation. The collection of expressed sequences involved ribosomal proteins, members of the oxylase/oxygenase gene family, betaine aldehyde dehydrogenase, Dc3 promoter-binding factor, a putative member of the nodulin family, glutathione-S-transferase and proteins with unknown functions. In the inter-cross, two linked markers exhibited 89% deficiency of heterozygosity. Thirteen genes were positioned on ten different oak chromosomes and can serve as orthologous markers in comparative mapping studies within Fagaceae. © Springer-Verlag 2005. |
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INRA BIOGECO, 69 Route d'Arcachon, 33612 Cestas, France |
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16142942 (Issn) |
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Cited By (since 1996): 9; Export Date: 22 October 2011; Source: Scopus; doi: 10.1007/s11295-005-0005-1; Language of Original Document: English; Correspondence Address: Burg, K.; Division of Biogenetics and Natural Resources, Austrian Research Center Seibersdorf, 2444 Seibersdorf, Austria; email: kornel.burg@arcs.ac.at |
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EcoFoG @ webmaster @ |
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357 |
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Levionnois, S.; Jansen, S.; Wandji, R.T.; Beauchêne, J.; Ziegler, C.; Coste, S.; Stahl, C.; Delzon, S.; Authier, L.; Heuret, P. |
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Title |
Linking drought-induced xylem embolism resistance to wood anatomical traits in Neotropical trees |
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Journal Article |
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Year |
2021 |
Publication |
New Phytologist |
Abbreviated Journal |
New Phytol. |
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229 |
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3 |
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1453-1466 |
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bordered pits; drought-induced embolism; pit membrane; transmission electron microscopy; tropical trees; vessel grouping; xylem anatomy |
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Drought-induced xylem embolism is considered to be one of the main factors driving mortality in woody plants worldwide. Although several structure–functional mechanisms have been tested to understand the anatomical determinants of embolism resistance, there is a need to study this topic by integrating anatomical data for many species. We combined optical, laser, and transmission electron microscopy to investigate vessel diameter, vessel grouping, and pit membrane ultrastructure for 26 tropical rainforest tree species across three major clades (magnoliids, rosiids, and asteriids). We then related these anatomical observations to previously published data on drought-induced embolism resistance, with phylogenetic analyses. Vessel diameter, vessel grouping, and pit membrane ultrastructure were all predictive of xylem embolism resistance, but with weak predictive power. While pit membrane thickness was a predictive trait when vestured pits were taken into account, the pit membrane diameter-to-thickness ratio suggests a strong importance of the deflection resistance of the pit membrane. However, phylogenetic analyses weakly support adaptive coevolution. Our results emphasize the functional significance of pit membranes for air-seeding in tropical rainforest trees, highlighting also the need to study their mechanical properties due to the link between embolism resistance and pit membrane diameter-to-thickness ratio. Finding support for adaptive coevolution also remains challenging. © 2020 The Authors New Phytologist © 2020 New Phytologist Foundation |
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UMR BIOGECO, INRAE, Université de Bordeaux, Pessac, 33615, France |
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Blackwell Publishing Ltd |
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0028646x (Issn) |
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EcoFoG @ webmaster @ |
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997 |
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Roggy, J.C.; Nicolini, E.; Imbert, P.; Caraglio, Y.; Bosc, A.; Heuret, P. |
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Links between tree structure and functional leaf traits in the tropical forest tree Dicorynia guianensis Amshoff (Caesalpiniaceae) |
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Journal Article |
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Year |
2005 |
Publication |
Annals of Forest Science |
Abbreviated Journal |
Ann. For. Sci. |
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62 |
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6 |
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553-564 |
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Dicorynia guianensis; leaf structure; functional leaf traits; plasticity; tree structure |
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This study looked at the interactive effects of tree architectural stage of development (ASD) and light availability on different plant traits (growth parameters, leaf morpho-anatomy and photosynthetic capacities) in the tropical species Dicorynia guianensis. A qualitative architectural analysis was used to categorize tree individuals sampled along a natural light gradient. The results show that some traits could have an ASD-dependence at the whole plant and leaf level without control of light. The changes observed relate to vigour thresholds the plant has to reach to shift from one ASD to another (i.e., the number of nodes and the internodes length per Growth Unit). Light conditions do not modify these thresholds but may modify the time they are crossed. Tree height was found strongly modulated by light conditions; hence, at a similar height, individuals may belong to different ASD. At the functional level, a decrease in N-m, and A(maxm) was observed with increasing light availability, while N-a increased and A(maxa) remained unaffected. An ASD effect was also observed on Amaxa and LMA but not on Amaxm. These results demonstrated a weak ability of photosynthetic plasticity in response to light conditions, and that variations of leaf photosynthetic variables according to ASD can be explained by modifications in leaf nitrogen and LMA. Questions on the reliability of a height-based sampling strategy for evaluating the phenotypic plasticity of trees in relation to light conditions are raised. |
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INRA, Ecol Forets Guyane, ENGREF, UMR CIRAD, F-97387 Kourou, Guyane Francais, France, Email: roggy.j@cirad.fr |
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EDP SCIENCES S A |
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1286-4560 |
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ISI:000232084400009 |
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EcoFoG @ eric.marcon @ |
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229 |
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Coq, S.; Weigel, J.; Butenschoen, O.; Bonal, D.; Hattenschwiler, S. |
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Title |
Litter composition rather than plant presence affects decomposition of tropical litter mixtures |
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Journal Article |
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2011 |
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Plant and Soil |
Abbreviated Journal |
Plant Soil |
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343 |
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1-2 |
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273-286 |
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Keywords |
Amazonian lowland rainforest; Belowground/aboveground interactions; Litter decomposition; Non-additive effect; Nitrogen dynamic; Plant-soil feedback |
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Litter decomposition is strongly controlled by litter quality, but the composition of litter mixtures and potential interactions with live plants through root activity may also influence decomposers. In a greenhouse experiment in French Guiana we studied the combined effects of the presence of tropical tree seedlings and of distinct litter composition on mass and nitrogen (N) loss from decomposing litter and on microbial biomass. Different litter mixtures decomposed for 435 days in pots filled with sand and containing an individual seedling from one of four different tree species. We found both additive and negative non-additive effects (NAE) of litter mixing on mass loss, whereas N loss showed negative and positive NAE of litter mixing. If litter from the two tree species, Platonia insignis and Goupia glabra were present, litter mixtures showed more positive and more negative NAE on N loss, respectively. Overall, decomposition, and in particular non-additive effects, were only weakly affected by the presence of tree seedlings. Litter mass loss weakly yet significantly decreased with increasing fine root biomass in presence of Goupia seedlings, but not in the presence of seedlings of any other tree species. Our results showed strong litter composition effects and also clear, mostly negative, non-additive effects on mass loss and N loss. Species identity of tree seedlings can modify litter decomposition, but these live plant effects remain quantitatively inferior to litter composition effects. |
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[Coq, Sylvain; Haettenschwiler, Stephan] CNRS, CEFE, F-34293 Montpellier 5, France, Email: sylvain.coq@gmail.com |
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Springer |
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0032-079x |
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ISI:000290688000020 |
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EcoFoG @ webmaster @ |
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320 |
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Coq, S.; Weigel, J.; Bonal, D.; Hattenschwiler, S. |
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Litter mixture effects on tropical tree seedling growth – a greenhouse experiment |
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Journal Article |
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2012 |
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Plant Biology |
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Plant Biol. |
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14 |
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4 |
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630-640 |
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Amazonian lowland rain forest; Autotoxicity; Belowground/aboveground interactions; Litter decomposition; Plant nutrition; Plant-soil feedback |
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Decomposing litter provides critical nutrients for plants, particularly in nutrient-poor ecosystems such as tropical forests. We hypothesised that decomposing litter improves the performance of a variety of tropical tree seedlings, and that this litter effect varies depending on the species of litter present in litter mixtures. We addressed these hypotheses with a large pot experiment manipulating a range of different litter mixtures of contrasting quality and using seedlings of four tree species from the Amazonian forest of French Guiana. In contrast to our initial hypothesis, decomposing litter had either neutral or negative impacts on seedling growth, despite strongly different growth rates, biomass allocation patterns and leaf and root traits among tree species. Tree species varied in their responses to litter additions, which were further modified by species identity of the added litter. Our data show litter species-specific effects on growth, biomass allocation and leaf and root traits of tropical tree seedlings. These results suggest that a net nutrient release from decomposing litter does not necessarily improve tree seedling growth, even under nutrient-limiting conditions. In conclusion, litter layer composition may affect seedling establishment and recruitment success beyond litter-derived plant nutrient availability, which may contribute to tree species composition and dynamics in the studied tropical forest. © 2012 German Botanical Society and The Royal Botanical Society of the Netherlands. |
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INRA, UMR, Écologie et Écophysiologie, Champenoux, France |
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14358603 (Issn) |
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Export Date: 27 June 2012; Source: Scopus; Coden: Pbiof; doi: 10.1111/j.1438-8677.2011.00534.x; Language of Original Document: English; Correspondence Address: Coq, S.; Laboratoire d'Ecologie Alpine (LECA), CNRS, Université Joseph Fourier, BP 53, F-38042 Grenoble, Cedex 09, France; email: sylvain.coq@gmail.com |
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EcoFoG @ webmaster @ |
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407 |
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Groc, S.; Delabie, J.H.C.; Fernandez, F.; Petitclerc, F.; Corbara, B.; Leponce, M.; Céréghino, R.; Dejean, A. |
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Title |
Litter-dwelling ants as bioindicators to gauge the sustainability of small arboreal monocultures embedded in the Amazonian rainforest |
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Journal Article |
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2017 |
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Ecological Indicators |
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82 |
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43-49 |
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Ant diversity; Community alteration; Forest species; Functional traits; Human disturbance; Tree monocultures |
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One of the greatest threats to biodiversity and the sustainable functioning of ecosystems is the clearing of forests for agriculture. Because litter-dwelling ants are very good bioindicators of man-made disturbance, we used them to compare monospecific plantations of acacia trees, cocoa trees, rubber trees and pine trees with the surrounding Neotropical rainforest (in contrast to previous studies on forest fragments embedded in industrial monocultures). Although the global level of species turnover was weak, species richness decreased along a gradient from the forest (including a treefall gap) to the tree plantations among which the highest number of species was noted for the cocoa trees, which are known to be a good compromise between agriculture and conservation. Species composition was significantly different between natural habitats and the plantations that, in turn, were different from each other. Compared to the forest, alterations in the ant communities were (1) highest for the acacia and rubber trees, (2) intermediate for the cocoa trees, and, (3) surprisingly, far lower for the pine trees, likely due to very abundant litter. Functional traits only separated the rubber tree plantation from the other habitats due to the higher presence of exotic and leaf-cutting ants. This study shows that small monospecific stands are likely sustainable when embedded in the rainforest and that environmentally-friendly strategies can be planned accordingly. © 2017 Elsevier Ltd |
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Ecolab, Université de Toulouse, CNRS, INPT, UPS, Toulouse, France |
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Export Date: 9 July 2017 |
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EcoFoG @ webmaster @ |
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758 |
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Réjou-Méchain, M.; Muller-Landau, H.C.; Detto, M.; Thomas, S.C.; Le Toan, T.; Saatchi, S.S.; Barreto-Silva, J.S.; Bourg, N.A.; Bunyavejchewin, S.; Butt, N.; Brockelman, W.Y.; Cao, M.; Cárdenas, D.; Chiang, J.-M.; Chuyong, G.B.; Clay, K.; Condit, R.; Dattaraja, H.S.; Davies, S.J.; Duque, A.; Esufali, S.; Ewango, C.; Fernando, R.H.S.; Fletcher, C.D.; N. Gunatilleke, I.A.U.; Hao, Z.; Harms, K.E.; Hart, T.B.; Herault, B.; Howe, R.W.; Hubbell, S.P.; Johnson, D.J.; Kenfack, D.; Larson, A.J.; Lin, L.; Lin, Y.; Lutz, J.A.; Makana, J.-R.; Malhi, Y.; Marthews, T.R.; Mcewan, R.W.; Mcmahon, S.M.; Mcshea, W.J.; Muscarella, R.; Nathalang, A.; Noor, N.S.M.; Nytch, C.J.; Oliveira, A.A.; Phillips, R.P.; Pongpattananurak, N.; Punchi-Manage, R.; Salim, R.; Schurman, J.; Sukumar, R.; Suresh, H.S.; Suwanvecho, U.; Thomas, D.W.; Thompson, J.; Uríarte, M.; Valencia, R.; Vicentini, A.; Wolf, A.T.; Yap, S.; Yuan, Z.; Zartman, C.E.; Zimmerman, J.K.; Chave, J. |
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Title |
Local spatial structure of forest biomass and its consequences for remote sensing of carbon stocks |
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Journal Article |
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2014 |
Publication |
Biogeosciences |
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Biogeosciences |
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11 |
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23 |
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6827-6840 |
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Advances in forest carbon mapping have the potential to greatly reduce uncertainties in the global carbon budget and to facilitate effective emissions mitigation strategies such as REDD+ (Reducing Emissions from Deforestation and Forest Degradation). Though broad-scale mapping is based primarily on remote sensing data, the accuracy of resulting forest carbon stock estimates depends critically on the quality of field measurements and calibration procedures. The mismatch in spatial scales between field inventory plots and larger pixels of current and planned remote sensing products for forest biomass mapping is of particular concern, as it has the potential to introduce errors, especially if forest biomass shows strong local spatial variation. Here, we used 30 large (8-50 ha) globally distributed permanent forest plots to quantify the spatial variability in aboveground biomass density (AGBD in Mg ha-1) at spatial scales ranging from 5 to 250 m (0.025-6.25 ha), and to evaluate the implications of this variability for calibrating remote sensing products using simulated remote sensing footprints. We found that local spatial variability in AGBD is large for standard plot sizes, averaging 46.3% for replicate 0.1 ha subplots within a single large plot, and 16.6% for 1 ha subplots. AGBD showed weak spatial autocorrelation at distances of 20-400 m, with autocorrelation higher in sites with higher topographic variability and statistically significant in half of the sites. We further show that when field calibration plots are smaller than the remote sensing pixels, the high local spatial variability in AGBD leads to a substantial “dilution” bias in calibration parameters, a bias that cannot be removed with standard statistical methods. Our results suggest that topography should be explicitly accounted for in future sampling strategies and that much care must be taken in designing calibration schemes if remote sensing of forest carbon is to achieve its promise. |
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Institute of Biology University of the Philippines DilimanQuezon City, Philippines |
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Cited By :1; Export Date: 30 January 2015 |
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EcoFoG @ webmaster @ |
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582 |
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Sist, P.; Nguyen-The, N. |
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Logging damage and the subsequent dynamics of a dipterocarp forest in East Kalimantan (1990-1996) |
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Journal Article |
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2002 |
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Forest Ecology and Management |
Abbreviated Journal |
For. Ecol. Manage. |
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165 |
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1-3 |
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85-103 |
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The effects of logging damage on forest dynamics processes were assessed in a lowland dipterocarp forest of East Kalimantan, Indonesia. From 1990 to 1991, twelve 4 ha plots (200 m x 200 m) each divided into four I ha subplots were set up and all trees with dbh greater than or equal to 10 cm measured and identified at least at the generic level. Logging was carried out from November 1991 to March 1992 in nine plots while three plots served as control. The 48 subplots were grouped according to the proportion Of remaining basal area after harvesting, as follows: group I with more than 80% of the original basal area remaining, group 2 with 70-79%, group 3 with less than 70%, and group 4 as control plots. Remeasurements were carried out just after logging in 1992 and then every 2 years until 1996. Felling intensity varied from I to 17 stems ha(-1) (50-250 m(3) ha(-1)). In primary forest, mean annual mortality remained constant to 1.5% per year throughout the study period while mean annual mortality rate was significantly higher in logged-over forest (2.6% per year). This higher rate resulted from a higher mortality of injured trees (4.9% per year). Four years after logging, mortality rates in logged-over and primary forest were similar. Recruitment remained constant at 8 trees ha(-1) per year in primary forest and varied from 14 to 32 trees ha(-1) per year in logged-over stand in proportion with the amount of damage. In stands with the lowest remaining basal area, the establishment and growth of dipterocarps was strongly limited by the strong regeneration of pioneer species. This study suggests that total basal area removed by logging in primary forest (harvested trees and trees killed during felling and skidding) should not exceed 15% of the original one; reduced-impact logging (RIL) techniques applied with a maximum harvesting intensity of 8 trees ha(-1), can keep logging damage under this threshold. (C) 2002 Elsevier Science B.V. All rights reserved. |
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0378-1127 |
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WOS:000176620100008 |
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EcoFoG @ webmaster @ |
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312 |
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Rockwell, C.A.; Kainer, K.A.; d'Oliveira, M.V.N.; Staudhammer, C.L.; Baraloto, C. |
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Logging in bamboo-dominated forests in southwestern Amazonia: Caveats and opportunities for smallholder forest management |
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Journal Article |
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2014 |
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Forest Ecology and Management |
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For. Ecol. Manage. |
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315 |
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202-210 |
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Bamboo; Community forest management; Guadua; Logging; Timber management; Tropical forest |
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Guadua sarcocarpa and Guadua weberbaueri (Poaceae: Bambuseae) have a negative influence on tree regeneration and recruitment in bamboo-dominated forests of southwestern Amazonia. The lack of advanced regeneration and sparse canopy in this forest type present a considerable challenge for developing sustainable timber management plans. We conducted field studies in the Porto Dias Agroextractive Settlement Project in Acre, Brazil to assess influences of logging in bamboo-dominated forest sites. Taxonomic composition, stand structure, aboveground biomass, commercial timber volume, and commercial tree seedling and bamboo culm density were compared between five logged vs. unlogged sites in different landholdings, using modified 0.5. ha Gentry plots. No differences in taxonomic composition, aboveground biomass, adult and juvenile stem density, or woody seedling and bamboo culm density were detected between paired logged and unlogged sites. Commercial timber volume, however, was reduced by almost two-thirds in logged plots, suggesting that long-term timber management goals in this forest type are compromised since so few future crop trees remained onsite. Our findings indicate that in order to maximize local management objectives, community forest managers must approach logging in bamboo-dominated forests with caution. We suggest an integration of non-timber forest product extraction with low harvest intensity and low-impact logging, tending of natural regeneration, and diversification of commercial species. © 2014 Elsevier B.V. |
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INRA, UMR Ecologie des Forêts de Guyane, 97387 Kourou Cedex, French Guiana |
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03781127 (Issn) |
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Export Date: 15 February 2014; Source: Scopus; Coden: Fecmd; Language of Original Document: English; Correspondence Address: Rockwell, C.A.; School of Forest Resources and Conservation, University of Florida, Gainesville, FL 32611, United States; email: rockwell_cara@yahoo.com; Funding Details: DGE-0221599, NSF, National Science Foundation |
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EcoFoG @ webmaster @ |
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528 |
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Latouche-Halle, C.; Ramboer, A.; Bandou, E.; Caron, H.; Kremer, A. |
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Long-distance pollen flow and tolerance to selfing in a neotropical tree species |
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Journal Article |
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2004 |
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Molecular Ecology |
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Mol. Ecol. |
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13 |
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5 |
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1055-1064 |
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Dicorynia guianensis; microsatellites; outcrossing rate; pollen flow; reproductive success; tropical tree |
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Outcrossing rates, pollen dispersal and male mating success were assessed in Dicorynia guianensis Amshoff, a neotropical tree endemic to the Guiana shield. All adult trees within a continuous area of 40 ha (n = 157) were mapped, and were genotyped with six microsatellite loci. In addition, progenies were genotyped from 22 mature trees. At the population level, the species was mostly outcrossing (t(m) = 0.89) but there was marked variation among individuals. One tree exhibited mixed mating, confirming earlier results obtained with isozymes that D. guianensis can tolerate selfing. A Bayesian extension of the fractional paternity method was used for paternity analysis, and was compared with the neighbourhood method used widely for forest trees. Both methods indicated that pollen dispersal was only weakly related to distance between trees within the study area, and that the majority (62%) of pollen came from outside the study stand. Using maximum likelihood, male potential population size was estimated to be 1119, corresponding to a neighbourhood size of 560 hectares. Male mating success was, however, related to the diameter of the stem and to flowering intensity assessed visually. The mating behaviour of D. guianensis is a combination of long-distance pollen flow and occasional selfing. The species can still reproduce when it is extremely rare, either by selfing or by dispersing pollen at long distances. These results, together with the observation that male mating success was correlated with the size of the trees, could be implemented in management procedures aiming at regenerating the species. |
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INRA, UMR Ecol Forets Guyane, F-97387 Kourou, France, Email: caron@pierroton.mra.fr |
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BLACKWELL PUBLISHING LTD |
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0962-1083 |
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ISI:000221016300007 |
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237 |
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