| |
Records |
Links |
|
Author |
Leguet, A.; Gibernau, M.; Shintu, L.; Caldarelli, S.; Moja, S.; Baudino, S.; Caissard, J.-C. |
|
| |
Title |
Evidence for early intracellular accumulation of volatile compounds during spadix development in Arum italicum L. and preliminary data on some tropical Aroids |
Type |
Journal Article |
| |
Year |
2014 |
Publication |
Naturwissenschaften |
Abbreviated Journal |
Naturwissenschaften |
|
| |
Volume |
101 |
Issue |
8 |
Pages |
623-635 |
|
| |
Keywords |
Araceae; Cytochemistry; Gas chromatography; Nuclear magnetic resonance; Volatile compounds |
|
| |
Abstract |
Staining and histochemistry of volatile organic compounds (VOCs) were performed at different inflorescence developmental stages on nine aroid species; one temperate, Arum italicum and eight tropical from the genera Caladium, Dieffenbachia and Philodendron. Moreover, a qualitative and quantitative analysis of VOCs constituting the scent of A. italicum, depending on the stage of development of inflorescences was also conducted. In all nine species, vesicles were observed in the conical cells of either the appendix or the stamens (thecae) and the staminodes. VOCs were localised in intracellular vesicles from the early stages of inflorescence development until their release during receptivity of gynoecium. This localisation was observed by the increase of both number and diameter of the vesicles during 1 week before receptivity. Afterwards, vesicles were fewer and smaller but rarely absent. In A. italicum, staining and gas chromatography analyses confirmed that the vesicles contained terpenes. The quantitatively most important ones were the sesquiterpenes, but monoterpenes were not negligible. Indeed, the quantities of terpenes matched the vesicles' size evolution during 1 week. Furthermore, VOCs from different biosynthetic pathways (sesquiterpenes and alkanes) were at their maximum quantity 2 days before gynoecium receptivity (sesquiterpenes and alkanes) or during receptivity (isobutylamine, monoterpenes, skatole and p-cresol). VOCs seemed to be emitted during gynoecium receptivity and/or during thermogenesis, and FADs are accumulated after thermogenesis in the spadix. These complex dynamics of the different VOCs could indicate specialisation of some VOCs and cell machinery to attract pollinators on the one hand and to repulse/protect against phytophagous organisms and pathogens after pollination on the other hand. © 2014 Springer-Verlag Berlin Heidelberg. |
|
| |
Address |
CNRS, UMR-6134 SPE, 20000 Ajaccio, France |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher  |
Springer Verlag |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
00281042 (Issn) |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
Export Date: 1 September 2014; Coden: Natwa; Correspondence Address: Gibernau, M.; CNRS, UMR-6134 SPE, 20000 Ajaccio, France; email: gibernau@univ-corse.fr |
Approved |
no |
|
| |
Call Number |
EcoFoG @ webmaster @ |
Serial |
558 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Lenoir, A.; Touchard, A.; Devers, S.; Christidès, J.-P.; Boulay, R.; Cuvillier-Hot, V. |
|
| |
Title |
Ant cuticular response to phthalate pollution |
Type |
Journal Article |
| |
Year |
2014 |
Publication |
Environmental Science and Pollution Research |
Abbreviated Journal |
Environ. Sci. Pollut. Res. |
|
| |
Volume |
21 |
Issue |
23 |
Pages |
13446-13451 |
|
| |
Keywords |
Absorption; Ants; Bbp; Bioindicator; Cuticle; Dbp; Dehp; DiBP; Phthalates; Pollutants |
|
| |
Abstract |
Phthalates are common atmospheric contaminants used in the plastic industry. Ants have been shown to constitute good bioindicators of phthalate pollution. Hence, phthalates remain trapped on ant cuticles which are mostly coated with long-chain hydrocarbons. In this study, we artificially contaminated Lasius niger ants with four phthalates: dibutyl phthalate (DBP), diisobutyl phthalate (DiBP), di(2-ethylhexyl) phthalate (DEHP), and benzyl butyl phthalate (BBP). The first three have previously been found on ants in nature in Touraine (France), while the fourth has not. The four phthalates disappeared rapidly (less than 5 days) from the cuticles of live ants. In contrast, on the cuticles of dead ants, DEHP quantities remained unchanged over time. These results indicate that phthalates are actively absorbed by the cuticles of live ants. Cuticular absorption of phthalates is nonspecific because eicosane, a nonnatural hydrocarbon on L. niger cuticle, was similarly absorbed. Ants are important ecological engineers and may serve as bioindicators of ecosystem health. We also suggest that ants and more generally terrestrial arthropods may contribute to the removal of phthalates from the local environment. |
|
| |
Address |
CNRS, UMR Écologie des Forêts de Guyane (EcoFoG), Campus Agronomique, BP 316Kourou Cedex, France |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Verlag |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
09441344 (Issn) |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
Export Date: 5 December 2014; Coden: Esple; Correspondence Address: Lenoir, A.; IRBI, Institut de Recherche sur la Biologie de l’Insecte, UMR CNRS 7261, Université François RabelaisFrance |
Approved |
no |
|
| |
Call Number |
EcoFoG @ webmaster @ |
Serial |
570 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Devault, D.A.; Beilvert, B.; Winterton, P. |
|
| |
Title |
Ship breaking or scuttling? A review of environmental, economic and forensic issues for decision support |
Type |
Journal Article |
| |
Year |
2017 |
Publication |
Environmental Science and Pollution Research |
Abbreviated Journal |
Environ. Sci. Pollut. Res. |
|
| |
Volume |
24 |
Issue |
33 |
Pages |
25741-25774 |
|
| |
Keywords |
Artificial reef; Diving; Ship recycling; Ship Recycling Facilities; Shipbreaking; Tourism; Working conditions; Wrecks; artificial reef; coastal erosion; coastal zone management; cost-benefit analysis; decision support system; developing world; economic impact; environmental economics; environmental impact assessment; environmental issue; facility location; health and safety; invasive species; profitability; recycling; shipping; tourism; working conditions; wreck; analysis; decision support system; economics; international cooperation; pollution; prevention and control; procedures; recycling; ship; statistics and numerical data; Decision Support Techniques; Environmental Pollution; Internationality; Recycling; Ships |
|
| |
Abstract |
In a globalized world, the world trade fleet plays a pivotal role in limiting transport costs. But, the management of obsolete ships is an acute problem, with most Ship Recycling Facilities (SRF) situated in developing countries. They are renowned for their controversial work and safety conditions and their environmental impact. Paradoxically, dismantlement is paid for by the shipowners in accordance with international conventions therefore it is more profitable for them to sell off ships destined for scrapping. Scuttling, the alternative to scrapping, is assessed in the present review to compare the cost/benefit ratios of the two approaches. Although scrapping provides employment and raw materials – but with environmental, health and safety costs – scuttling provides fisheries and diving tourism opportunities but needs appropriate management to avoid organic and metal pollution, introduction of invasive species and exacerbation of coastal erosion. It is also limited by appropriate bottom depth, ship type and number. The present review inventories the environmental, health, safety, economic, and forensic aspects of each alternative. © 2016, Springer-Verlag Berlin Heidelberg. |
|
| |
Address |
Département Langues et Gestion, Université Toulouse III – Paul Sabatier, 118 route de Narbonne, Toulouse cedex 09, 31062, France |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Verlag |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
09441344 (Issn) |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
|
Approved |
no |
|
| |
Call Number |
EcoFoG @ webmaster @ |
Serial |
869 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Fichaux, M.; Béchade, B.; Donald, J.; Weyna, A.; Delabie, J.H.C.; Murienne, J.; Baraloto, C.; Orivel, J. |
|
| |
Title |
Habitats shape taxonomic and functional composition of Neotropical ant assemblages |
Type |
Journal Article |
| |
Year |
2019 |
Publication |
Oecologia |
Abbreviated Journal |
Oecologia |
|
| |
Volume |
189 |
Issue |
2 |
Pages |
501-513 |
|
| |
Keywords |
Formicidae; Functional diversity; Habitat filtering; Rainforest; Traits; Formicidae |
|
| |
Abstract |
Determining assembly rules of co-occurring species persists as a fundamental goal in community ecology. At local scales, the relative importance of environmental filtering vs. competitive exclusion remains a subject of debate. In this study, we assessed the relative importance of habitat filtering and competition in structuring understory ant communities in tropical forests of French Guiana. Leaf-litter ants were collected using pitfall and Winkler traps across swamp, slope and plateau forests near Saül, French Guiana. We used a combination of univariate and multivariate analyses to evaluate trait response of ants to habitat characteristics. Null model analyses were used to investigate the effects of habitat filtering and competitive interactions on community assembly at the scale of assemblages and sampling points, respectively. Swamp forests presented a much lower taxonomic and functional richness compared to slope and plateau forests. Furthermore, marked differences in taxonomic and functional composition were observed between swamp forests and slope or plateau forests. We found weak evidence for competitive exclusion based on null models. Nevertheless, the contrasting trait composition observed between habitats revealed differences in the ecological attributes of the species in the different forest habitats. Our analyses suggest that competitive interactions may not play an important role in structuring leaf-litter ant assemblages locally. Rather, habitats are responsible for driving both taxonomic and functional composition of ant communities. |
|
| |
Address |
International Center for Tropical Botany, Department of Biological Sciences, Florida International University, Miami, FL 33199, United States |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Verlag |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
00298549 (Issn) |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
|
Approved |
no |
|
| |
Call Number |
EcoFoG @ webmaster @ |
Serial |
863 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Grossiord, C.; Christoffersen, B.; Alonso-Rodríguez, A.M.; Anderson-Teixeira, K.; Asbjornsen, H.; Aparecido, L.M.T.; Carter Berry, Z.; Baraloto, C.; Bonal, D.; Borrego, I.; Burban, B.; Chambers, J.Q.; Christianson, D.S.; Detto, M.; Faybishenko, B.; Fontes, C.G.; Fortunel, C.; Gimenez, B.O.; Jardine, K.J.; Kueppers, L.; Miller, G.R.; Moore, G.W.; Negron-Juarez, R.; Stahl, C.; Swenson, N.G.; Trotsiuk, V.; Varadharajan, C.; Warren, J.M.; Wolfe, B.T.; Wei, L.; Wood, T.E.; Xu, C.; McDowell, N.G. |
|
| |
Title |
Precipitation mediates sap flux sensitivity to evaporative demand in the neotropics |
Type |
Journal Article |
| |
Year |
2019 |
Publication |
Oecologia |
Abbreviated Journal |
Oecologia |
|
| |
Volume |
191 |
Issue |
3 |
Pages |
519-530 |
|
| |
Keywords |
Evapotranspiration; Plant functional traits; Transpiration; Vapor pressure deficit; drought; evapotranspiration; flux measurement; hydrological cycle; Neotropical Region; precipitation (chemistry); precipitation (climatology); tree; tropical forest; tropical region; vapor pressure; water; drought; evapotranspiration; forest; tree; vapor pressure; Droughts; Forests; Plant Transpiration; Trees; Vapor Pressure; Water |
|
| |
Abstract |
Transpiration in humid tropical forests modulates the global water cycle and is a key driver of climate regulation. Yet, our understanding of how tropical trees regulate sap flux in response to climate variability remains elusive. With a progressively warming climate, atmospheric evaporative demand [i.e., vapor pressure deficit (VPD)] will be increasingly important for plant functioning, becoming the major control of plant water use in the twenty-first century. Using measurements in 34 tree species at seven sites across a precipitation gradient in the neotropics, we determined how the maximum sap flux velocity (vmax) and the VPD threshold at which vmax is reached (VPDmax) vary with precipitation regime [mean annual precipitation (MAP); seasonal drought intensity (PDRY)] and two functional traits related to foliar and wood economics spectra [leaf mass per area (LMA); wood specific gravity (WSG)]. We show that, even though vmax is highly variable within sites, it follows a negative trend in response to increasing MAP and PDRY across sites. LMA and WSG exerted little effect on vmax and VPDmax, suggesting that these widely used functional traits provide limited explanatory power of dynamic plant responses to environmental variation within hyper-diverse forests. This study demonstrates that long-term precipitation plays an important role in the sap flux response of humid tropical forests to VPD. Our findings suggest that under higher evaporative demand, trees growing in wetter environments in humid tropical regions may be subjected to reduced water exchange with the atmosphere relative to trees growing in drier climates. © 2019, Springer-Verlag GmbH Germany, part of Springer Nature. |
|
| |
Address |
Earth Systems Science Division, Pacific Northwest National Laboratory, Richland, WA, United States |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Verlag |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
00298549 (Issn) |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
|
Approved |
no |
|
| |
Call Number |
EcoFoG @ webmaster @ |
Serial |
904 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Almeras, T.; Yoshida, M.; Okuyama, T. |
|
| |
Title |
The generation of longitudinal maturation stress in wood is not dependent on diurnal changes in diameter of trunk |
Type |
Journal Article |
| |
Year |
2006 |
Publication |
Journal of Wood Science |
Abbreviated Journal |
J. Wood Sci. |
|
| |
Volume |
52 |
Issue |
5 |
Pages |
452-455 |
|
| |
Keywords |
maturation stress; growth stress; cell-wall maturation; continuous lighting; diurnal strains |
|
| |
Abstract |
A hypothetical mechanism for the generation of maturation stress in wood was tested experimentally. The hypothesis was that the maturation stress could partly originate in a physical mechanism related to daily changes in water pressure and associated diurnal strains. The matrix of lignin and hemicellulose, deposited in the cell wall during the night, would be put in compression by the effect of water tension during the next day. The cellulose framework, crystallizing during the day, would be put in tension by the decrease in tension at night and subsequent cell-wall swelling. This was tested on young saplings of sugi and beech. Half of the saplings were submitted to continuous lighting, which canceled diurnal strains. Saplings were tilted 40 degrees, and their uprighting movement was measured. The uprighting movement is directly due to the production of reaction wood and the concomitant development of large longitudinal maturation stress. It occurred in the continuously lighted plants at least as much as in control plants. We conclude that the generation of longitudinal maturation stress in tension or compression wood is not directly related to variations in water pressure and diurnal strains. |
|
| |
Address |
Nagoya Univ, Grad Sch Bioagr Sci, Lab Biomat Phys, Chikusa Ku, Nagoya, Aichi 4648601, Japan, Email: t_almeras@hotmail.com |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
SPRINGER TOKYO |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
1435-0211 |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
ISI:000241010600012 |
Approved |
no |
|
| |
Call Number |
EcoFoG @ eric.marcon @ |
Serial |
222 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Fouquet, A.; Dubut, V.; Hataway, R.; Scotti-Saintagne, C.; Scotti, I.; Noonan, B. |
|
| |
Title |
Isolation and characterisation of 19 microsatellite loci from the Amazonian frog Adenomera andreae (Amphibia: Anura: Leptodactylidae) |
Type |
Journal Article |
| |
Year |
2009 |
Publication |
Conservation Genetics Resources |
Abbreviated Journal |
Conserv. Genet. Res. |
|
| |
Volume |
1 |
Issue |
1 |
Pages |
217-220 |
|
| |
Keywords |
Biomedicine |
|
| |
Abstract |
Nineteen novel microsatellite loci were isolated from Adenomera andreae, a widespread Amazonian frog considered to be a species complex. Three multiplex kits were optimized. Genetic diversity was assessed in 66 individuals sampled in three populations along the West of the Approuague River catchment (French Guiana). We also tested the multiplex kits in four other Adenomera and nine Leptodactylus species with 43.4 and 17.5% success respectively. |
|
| |
Address |
|
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Netherlands |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
1877-7252 |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
|
Approved |
no |
|
| |
Call Number |
EcoFoG @ eric.marcon @ |
Serial |
185 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Meyer-Sand, B.R.V.; Blanc-Jolivet, C.; Mader, M.; Paredes-Villanueva, K.; Tysklind, N.; Sebbenn, A.M.; Guichoux, E.; Degen, B. |
|
| |
Title |
Development of a set of SNP markers for population genetics studies of Ipe (Handroanthus sp.), a valuable tree genus from Latin America |
Type |
Journal Article |
| |
Year |
2018 |
Publication |
Conservation Genetics Resources |
Abbreviated Journal |
Conserv. Gen. Res. |
|
| |
Volume |
10 |
Issue |
4 |
Pages |
779-781 |
|
| |
Keywords |
Handroanthus sp; MassARRAY; Single nucleotide polymorphism |
|
| |
Abstract |
A combination of restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing was used for the development of single nucleotide polymorphisms (SNP) and INDEL (insertion/deletions) genetic markers for Ipe (Handroanthus sp.). Of the 402 putative loci identified, 389 SNPs and INDELs (315 nuclear SPNs, six chloroplast INDELs, 15 chloroplast SNPs, 12 mitochondrial INDELs and 41 mitochondrial SNPs) were successfully genotyped at 93 individuals from Brazil, Bolivia and French Guiana using a MassARRAY® iPLEX™ platform. This set of markers will be invaluable for population genetics, phylogeography and DNA fingerprinting studies. © 2017, Springer Science+Business Media B.V., part of Springer Nature. |
|
| |
Address |
Plateforme Génome Transcriptome de Bordeaux, INRA Pierroton, Bâtiment Artiga, 69 route d’Arcachon, Cestas, 33610, France |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Netherlands |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
18777252 (Issn) |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
Export Date: 12 November 2018; Correspondence Address: Blanc-Jolivet, C.; Thünen Institute of Forest Genetics, Sieker Landstrasse 2, Germany; email: celine.blanc-jolivet@thuenen.de; References: Blanc-Jolivet, C., Kersten, B., Bourland, N., Guichoux, E., Delcamp, A., Doucet, J.-L., Degen, B., Development of nuclear SNP markers for the timber tracking of the African tree species Sapelli, Entandrophragma cylindricum (2017) Conserv Genet Resour; Blanc-Jolivet, C., Kersten, B., Daïnou, K., Hardy, O., Guichoux, E., Delcamp, A., Degen, B., Development of nuclear SNP markers for genetic tracking of Iroko, Milicia excelsa and Milicia regia (2017) Conserv Genet Resour; Braga, A.C., Reis, A.M.M., Leoi, L.T., Pereira, R.W., Collevatti, R.G., Development and characterization of microsatellite markers for the tropical tree species Tabebuia aurea (Bignoniaceae) (2007) Mol Ecol Notes, 7, pp. 53-56. , COI: 1:CAS:528:DC%2BD2sXis1Sjuro%3D; Dumolin, S., Demesure, B., Pettit, R., Inheritance of chloroplast and mitochondrial genomes in pedunculate oak investigated with an efficient PCR method (1995) Theor Appl Genet, 91, pp. 1253-1256. , COI: 1:CAS:528:DyaK28XhsFKmsLo%3D; Goudet, J., Fstat (Version 2.9.3.2.): a computer program to calculate F-statistics (2002) J Heredity, 86, pp. 485-486; Grose, S.O., Olmstead, R.G., Evolution of a charismatic neotropical clade: molecular phylogeny of Tabebuia s. L crescentieae, and allied genera (Bignoniaceae) (2007) Syst Bot, 32, pp. 650-659; Jardine, D.I., Blanc-Jolivet, C., Dixon, R.R.M., Dormontt, E.E., Dunker, B., Gerlach, J., Development of SNP markers for Ayous (Triplochiton scleroxylon K. Schum) an economically important tree species from tropical West and Central Africa (2016) Conserv Genet Resour, 8 (2), pp. 129-139; Miller, M.R., Dunham, J.P., Amores, A., Cresko, W.A., Johnson, E.A., Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers (2007) Genome Res, 17, pp. 240-248. , COI: 1:CAS:528:DC%2BD2sXhsFKis7w%3D; Pakull, B., Mader, M., Kersten, B., Ekue, M.R.M., Dipelet, U.G.B., Paulini, M., Development of nuclear, chloroplast and mitochondrial SNP markers for Khaya sp (2016) Conserv Genet Resour, 8 (3), pp. 283-297; Schulze, M., Grogan, J., Uhl, C., Lentini, M., Vidal, E., Evaluating Ipê (Tabebuia, Bignoniaceae) logging in amazonia: Sustainable management or catalyst for forest degradation? (2008) Biol Conserv, 141, pp. 2071-2085; Straub, S.C., Parks, M., Weitemier, K., fishbein, M., Cronn, R.C., Liston, A., Navigating the tip of the genomic iceberg: next-generation sequencing for plant systematics (2012) Am J Bot, 99, pp. 349-364. , COI: 1:CAS:528:DC%2BC38XksValtbo%3D |
Approved |
no |
|
| |
Call Number |
EcoFoG @ webmaster @ |
Serial |
832 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Sebbenn, A.M.; Blanc-Jolivet, C.; Mader, M.; Meyer-Sand, B.R.V.; Paredes-Villanueva, K.; Honorio Coronado, E.N.; García-Dávila, C.; Tysklind, N.; Troispoux, V.; Delcamp, A.; Degen, B. |
|
| |
Title |
Nuclear and plastidial SNP and INDEL markers for genetic tracking studies of Jacaranda copaia |
Type |
Journal Article |
| |
Year |
2019 |
Publication |
Conservation Genetics Resources |
Abbreviated Journal |
Conserv. Gen. Res. |
|
| |
Volume |
11 |
Issue |
3 |
Pages |
341-343 |
|
| |
Keywords |
DNA fingerprints; Geographical origin; Jacaranda copaia; MassARRAY; MiSeq; RADSeq; Tropical timber |
|
| |
Abstract |
Nuclear and plastidial single nucleotide polymorphism (SNP) and INDEL markers were developed using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing for population genetics and timber tracking purposes in the Neotropical timber species Jacaranda copaia. We used 407 nuclear SNPs, 29 chloroplast, and 31 mitochondrial loci to genotype 92 individuals from Brazil, Bolivia, French Guiana, and Peru. Based on high amplification rates and genetic differentiation among populations, 113 nuclear SNPs, 11 chloroplast, and 4 mitochondrial loci were selected, and their use validated for genetic tracking of timber origin. |
|
| |
Address |
BIOGECO, INRA, Univ. Bordeaux, Cestas, 33610, France |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Netherlands |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
18777252 (Issn) |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
|
Approved |
no |
|
| |
Call Number |
EcoFoG @ webmaster @ |
Serial |
907 |
|
| Permanent link to this record |
| |
|
| |
|
Author |
Chaves, C.L.; Blanc-Jolivet, C.; Sebbenn, A.M.; Mader, M.; Meyer-Sand, B.R.V.; Paredes-Villanueva, K.; Honorio Coronado, E.N.; Garcia-Davila, C.; Tysklind, N.; Troispoux, V.; Massot, M.; Degen, B. |
|
| |
Title |
Nuclear and chloroplastic SNP markers for genetic studies of timber origin for Hymenaea trees |
Type |
Journal Article |
| |
Year |
2019 |
Publication |
Conservation Genetics Resources |
Abbreviated Journal |
Conserv. Gen. Res. |
|
| |
Volume |
11 |
Issue |
3 |
Pages |
329-331 |
|
| |
Keywords |
DNA fingerprints; Geographical origin; MiSeq; RADSeq |
|
| |
Abstract |
We developed nuclear and chloroplastic single nucleotide polymorphism (SNP) and INDEL (insertion/deletion) markers using restriction associated DNA sequencing (RADSeq) and low coverage MiSeq genome sequencing to set up a genetic tracking method of the geographical origin of Hymenaea sp. From two initial sets of 358 and 32 loci used to genotype at least 94 individuals, a final set of 75 nSNPs, 50 cpSNPs and 6 INDELs identifying significant population structure was developed. © 2018, Springer Nature B.V. |
|
| |
Address |
Departamento de Fitotecnia, Faculdade de Engenharia de Ilha Solteira, Universidade Estadual Paulista, Ilha Solteira, SP, Brazil |
|
| |
Corporate Author |
|
Thesis |
|
|
| |
Publisher |
Springer Netherlands |
Place of Publication |
|
Editor |
|
|
| |
Language |
|
Summary Language |
|
Original Title |
|
|
| |
Series Editor |
|
Series Title |
|
Abbreviated Series Title |
|
|
| |
Series Volume |
|
Series Issue |
|
Edition |
|
|
| |
ISSN |
18777252 (Issn) |
ISBN |
|
Medium |
|
|
| |
Area |
|
Expedition |
|
Conference |
|
|
| |
Notes |
|
Approved |
no |
|
| |
Call Number |
EcoFoG @ webmaster @ |
Serial |
908 |
|
| Permanent link to this record |
