Tysklind, N., Blanc-Jolivet, C., Mader, M., Meyer-Sand, B. R. V., Paredes-Villanueva, K., Honorio Coronado, E. N., et al. (2019). Development of nuclear and plastid SNP and INDEL markers for population genetic studies and timber traceability of Carapa species. Conserv. Gen. Res., 11(3), 337–339.
Abstract: Low coverage MiSeq genome sequencing and restriction associated DNA sequencing (RADseq) were used to identify nuclear and plastid SNP and INDEL genetic markers in Carapa guianensis. 261 genetic markers including 237 nuclear SNPs, 22 plastid SNPs, and 2 plastid INDELs are described based on 96 genotyped individuals from French Guiana, Brazil, Peru, and Bolivia. The best 117 SNPs for identifying population structure and performing individual assignment are assembled into four multiplexes for MassARRAY genotyping.
Keywords: Carapa guianensis; Carapa surinamensis; DNA-fingerprints; Geographical origin; MassARRAY; MiSeq; RADSeq; Tropical timber
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Levionnois, S., Ziegler, C., Heuret, P., Jansen, S., Stahl, C., Calvet, E., et al. (2021). Is vulnerability segmentation at the leaf‑stem transition a drought resistance mechanism? A theoretical test with a trait‑based model for Neotropical canopy tree species. Annals of Forest Science, 78(4), 78–87.
Abstract: Leaf-stem vulnerability segmentation predicts lower xylem embolism resistance in leaves than stem. However, although it has been intensively investigated these past decades, the extent to which vulnerability segmentation promotes drought resistance is not well understood. Based on a trait-based model, this study theoretically supports that vulnerability segmentation enhances shoot desiccation time across 18 Neotropical tree species. CONTEXT: Leaf-stem vulnerability segmentation predicts lower xylem embolism resistance in leaves than stems thereby preserving expensive organs such as branches or the trunk. Although vulnerability segmentation has been intensively investigated these past decades to test its consistency across species, the extent to which vulnerability segmentation promotes drought resistance is not well understood. AIMS: We investigated the theoretical impact of the degree of vulnerability segmentation on shoot desiccation time estimated with a simple trait-based model. METHODS: We combined data from 18 tropical rainforest canopy tree species on embolism resistance of stem xylem (flow-centrifugation technique) and leaves (optical visualisation method). Measured water loss under minimum leaf and bark conductance, leaf and stem capacitance, and leaf-to-bark area ratio allowed us to calculate a theoretical shoot desiccation time (tcᵣᵢₜ). RESULTS: Large degrees of vulnerability segmentation strongly enhanced the theoretical shoot desiccation time, suggesting vulnerability segmentation to be an efficient drought resistance mechanism for half of the studied species. The difference between leaf and bark area, rather than the minimum leaf and bark conductance, determined the drastic reduction of total transpiration by segmentation during severe drought. CONCLUSION: Our study strongly suggests that vulnerability segmentation is an important drought resistance mechanism that should be better taken into account when investigating plant drought resistance and modelling vegetation. We discuss future directions for improving model assumptions with empirical measures, such as changes in total shoot transpiration after leaf xylem embolism.
Keywords: Neotropics, bark, canopy, capacitance, drought, drought tolerance, embolism, leaves, models, transpiration, trees, tropical rain forests, xylem
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Gonzalès-Melo, A., Posada, J. M., Beauchêne, J., Lehnebach, R., Leviennois, S., Rivera, K., et al. (2021). Radial variations in wood functional traits in a rain forest from eastern Amazonia. Trees, 36, 569–581.
Abstract: Trees can modify their wood structure in response to changes in mechanical, hydraulic and storage demands during their life-cycles. Thus, examining radial variations in wood traits is important to expand our knowledge of tree functioning and species ecological strategies. Yet, several aspects of radial changes in wood functional traits are still poorly understood, especially in angiosperm trees from tropical humid forests. Here, we examined radial shifts in wood traits in trunks of tropical forest species and explored their potential ecological implications. We first examined radial variations in wood specific gravity (WSG). Then, we asked what anatomical traits drove radial variations in WSG, and whether WSG, vessel fraction and specific hydraulic conductivity vary independently from each other along the radius gradients. We measured WSG and eight wood anatomical traits, at different radial positions along the trunks, in 19 tree species with contrasting shade-tolerance from a lowland tropical forest in eastern Amazonia. Most species had significant radials shifts in WSG. Positive radial gradients in WSG (i.e., increments from pith to bark) were common among shade-intolerant species and were explained by different combinations of fiber and parenchyma traits, while negative radial shifts in WSG (e.g., decreases towards the bark) were present in shade-tolerants, but were generally weakly related to anatomical traits. We also found that, in general, WSG was unrelated to vessel fraction and specific hydraulic conductivity in any radial position. This study illustrates the contrasting radial variations in wood functional traits that occur in tree species from a humid lowland tropical forest. In particular, our results provide valuable insights into the anatomical traits driving WSG variations during tree development. These insights are important to expand our knowledge on tree ecological strategies by providing evidence on how wood allocation varies as trees grow, which in turn can be useful in studying trait-demography associations, and in estimating tree above-ground biomass.
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Schmitt, S., Derroire, G., Tysklind, N., Heuertz, M., & Hérault, B. (2021). Topography shapes the local coexistence of tree species within species complexes of Neotropical forests. Oecologia, 196, 389–398.
Abstract: Forest inventories in Amazonia include around 5000 described tree species belonging to more than 800 genera. Numerous species-rich genera share genetic variation among species because of recent speciation and/or recurrent hybridisation, forming species complexes. Despite the key role that tree species complexes play in understanding Neotropical diversification, and their need to exploit a diversity of niches, little is known about the mechanisms that allow local coexistence of tree species complexes and their species in sympatry. In this study, we explored the fine-scale distribution of five tree species complexes and 22 species within these complexes. Combining forest inventories, botanical determination, and LiDAR-derived topographic data over 120 ha of permanent plots in French Guiana, we used a Bayesian modelling framework to test the role of fine-scale topographic wetness and tree neighbourhood on the occurrence of species complexes and the relative distribution of species within complexes. Species complexes of Neotropical trees were widely spread across the topographic wetness gradient at the local scale. Species within complexes showed pervasive niche differentiation along with topographic wetness and competition gradients. Similar patterns of species-specific habitat preferences were observed within several species complexes: species more tolerant to competition for resources grow in drier and less fertile plateaus and slopes. If supported by partial reproductive isolation of species and adaptive introgression at the species complex level, our results suggest that both species-specific habitat specialisation within species complexes and the broad ecological distribution of species complexes might explain the success of these species complexes at the regional scale.
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Yamamoto, H., & Almeras, T. (2007). A mathematical verification of the reinforced-matrix hypothesis using the Mori-Tanaka theory. J. Wood Sci., 53(6), 505–509.
Abstract: This article presents a theoretical verification of the reinforced-matrix hypothesis derived from tensor equations, σ W = σ f + σ m and ε W = ε f = ε m (Wood Sci Technol 32:171–182, 1998; Wood Sci Technol 33:311–325, 1999; J Biomech Eng 124:432–440, 2002), using classical Mori-Tanaka theory on the micromechanics of fiber-reinforced materials (Acta Metall 21:571–574, 1973; Micromechanics — dislcation and inclusions (in Japanese), pp 141–147, 1976). The Mori-Tanaka theory was applied to a small fragment of the cell wall undergoing changes in its physical state, such as those arising from sorption of moisture, maturation of wall components, or action of an external force, to obtain ⟨σ A⟩D = ϕ·⟨σ F⟩I + (1−ϕ)·⟨σ M⟩D−I. When the constitutive equation of each constituent material was applied to the equation ⟨σ A⟩D = ϕ·⟨σ F⟩I + (1−ϕ)·⟨σ M⟩D−I, the equations σ W = σ f + σ m and ε W = ε f = ε m were derived to lend support to the concept that two main phases, the reinforcing cellulose microfibril and the lignin-hemicellulose matrix, coexist in the same domain. The constitutive equations for the cell wall fragment were obtained without recourse to additional parameters such as Eshelby’s tensor S and Hill’s averaged concentration tensors AF and AM. In our previous articles, the coexistence of two main phases and σ W = σ f + σ m and ε W = ε f =ε m had been taken as our starting point to formulate the behavior of wood fiber with multilayered cell walls. The present article provides a rational explanation for both concepts.
Keywords: Engineering
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Van Langenhove, L., Depaepe, T., Vicca, S., van den Berge, J., Stahl, C., Courtois, E., et al. (2019). Regulation of nitrogen fixation from free-living organisms in soil and leaf litter of two tropical forests of the Guiana shield. Plant Soil, .
Abstract: Background and aims: Biological fixation of atmospheric nitrogen (N 2 ) is the main pathway for introducing N into unmanaged ecosystems. While recent estimates suggest that free-living N fixation (FLNF) accounts for the majority of N fixed in mature tropical forests, the controls governing this process are not completely understood. The aim of this study was to quantify FLNF rates and determine its drivers in two tropical pristine forests of French Guiana. Methods: We used the acetylene reduction assay to measure FLNF rates at two sites, in two seasons and along three topographical positions, and used regression analyses to identify which edaphic explanatory variables, including carbon (C), nitrogen (N), phosphorus (P) and molybdenum (Mo) content, pH, water and available N and P, explained most of the variation in FLNF rates. Results: Overall, FLNF rates were lower than measured in tropical systems elsewhere. In soils seasonal variability was small and FLNF rates differed among topographies at only one site. Water, P and pH explained 24% of the variation. In leaf litter, FLNF rates differed seasonally, without site or topographical differences. Water, C, N and P explained 46% of the observed variation. We found no regulatory role of Mo at our sites. Conclusions: Rates of FLNF were low in primary rainforest on poor soils on the Guiana shield. Water was the most important rate-regulating factor and FLNF increased with increasing P, but decreased with increasing N. Our results support the general assumption that N fixation in tropical lowland forests is limited by P availability. © 2019, The Author(s).
Keywords: Free-living nitrogen fixation; French Guiana; Molybdenum; Nutrients; Phosphorus; Tropical forest
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Scotti, I., Calvo-Vialettes, L., Scotti-Saintagne, C., Citterio, M., Degen, B., & Bonal, D. (2010). Genetic variation for growth, morphological, and physiological traits in a wild population of the Neotropical shade tolerant rainforest tree Sextonia rubra (Mez) van der Werff (Lauraceae). Tree Genet. Genomes, 6(2), 319–329.
Abstract: Quantitative genetic diversity is a fundamental component of the interaction between natural populations and their environment. In breeding programmes, quantitative genetic studies on tropical trees have so far focused on fast-growing, light-demanding species, but no information exists on shade-tolerant, slow-growing species. For this study, 27 3-year-old open-pollinated families of the Neotropical shade-tolerant rainforest tree Sextonia rubra were measured in semicontrolled conditions for 20 morphological, growth, and photosynthesis traits; the effect of genetic relatedness, habitat of provenance, and mother tree status on seedling traits was analysed. Nine traits displayed significant genetic effects, while mother tree status and habitat effects were not significant (P > 0.05) for an y trait. Estimated heritability varied between 0.14 and 0.28, with growth-related traits having the highest values. Additive genetic variation correlated positively with nonheritable variation, suggesting that ecological-evolutionary factors increasing or decreasing additive genetic variance may also affect nonheritable variation in the same direction. Our results suggest that quantitative genetic variability should be taken into account in ecological studies on, and in the management of, natural tropical rainforests; further research is needed to investigate genetic x environment interactions, in particular from the point of view of the genetic response of shade-tolerant plant species to variations in light availability.
Keywords: Ecophysiological traits; Heritability; Guiana shield; Amazon; Ecological genetics
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Brendel, O., Le Thiec, D., Scotti-Saintagne, C., Bodenes, C., Kremer, A., & Guehl, J. M. (2008). Quantitative trait loci controlling water use efficiency and related traits in Quercus robur L. Tree Genet. Genomes, 4(2), 263–278.
Abstract: Genetic variation for intrinsic water use efficiency (W-i) and related traits was estimated in a full-sib family of Quercus robur L. over 3 years. The genetic linkage map available for this F1 family was used to locate quantitative trait loci (QTL) for W-i, as estimated by leaf carbon stable isotope composition (delta C-13) or the ratio of net CO2 assimilation rate (A) to stomatal conductance to water vapour (g(w)) and related leaf traits. Gas exchange measurements were used to standardize estimates of A and g(w) and to model the sensitivity of gw to leaf-to-air vapour pressure deficit (sg(VPD)). delta C-13 varied by more than 3% among the siblings, which is equivalent to 40% variation of W-i. Most of the studied traits exhibited high clonal mean repeat-abilities (> 50%; proportion of clonal mean variability in global variance). Repeatabilities for delta C-13, leaf mass per area (LMA) and leaf nitrogen content were higher than 70%. For delta C-13, ten QTLs were detected, one of which was detected repeatedly for all 3 years and consistently explained more than 20% of measured variance. Four genomic regions were found in which co-localizing traits linked variation in W-i to variations in leaf chlorophyll and nitrogen content, LMA and sg(VPD). A positive correlation using clonal means between delta C-13 and A/g(w), as well as a co-localisation of QTL detected for both traits, can be seen as validation of the theoretical model linking the genetic architecture of these two traits.
Keywords: Quercus robur; carbon isotope composition; delta C-13; water use efficiency; QTL
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Scotti, I., Burelli, A., Cattonaro, F., Chagne, D., Fuller, J., Hedley, P. E., et al. (2005). Analysis of the distribution of marker classes in a genetic linkage map: a case study in Norway spruce (Picea abies karst). Tree Genet. Genomes, 1(3), 93–102.
Abstract: In order to analyze the large-scale structure of the genome of Norway spruce (Picea abies Karst.), a pseudo-testcross genetic linkage map was built using markers of six different types, belonging to the low (amplified fragment length polymorphisms, simple sequence repeats) or high (sequence-specific amplified polymorphisms, inter-retrotransposon amplified polymorphisms) copy-number fraction of the genome, and including expressed region-derived markers (expressed sequence tag polymorphisms). Twenty seven and 23 linkage groups of at least four markers were obtained for the female and the male parent maps, respectively. A subset of these linkage groups coalesced into 13 bi-parental linkage groups through markers shared between the two maps. This map was used to investigate the frequency of each marker type over chromosomes and the distribution of marker types relative to each other, using autocorrelation techniques. Our results show that, while the composition of chromosomes is homogeneous, low- and high-copy-number markers tend to occupy separate regions of the linkage groups, and that expressed sequences are preferentially associated with microsatellites and separated from retrotranspo sons. These results indicate that the spatial structure of Norway spruce chromosomes is not homogeneous.
Keywords: Picea abies; conifers; linkage map; genome structure; molecular markers; autocorrelation
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Chevolot, M., Louisanna, E., Azri, W., Leblanc-Fournier, N., Roeckel-Drevet, P., Scotti-Saintagne, C., et al. (2011). Isolation of primers for candidate genes for mechano-sensing in five Neotropical tree species. Tree Genet. Genomes, 7(3), 655–661.
Abstract: Mechanical signals have an impact on plant development. Tropical rainforest trees display large variability for life-history traits related to biomechanics and therefore are a unique study system to better understand biomechanical trait variability from an evolutionary perspective. From sequences and gene expression data available in model species, we developed specific primers for six candidate genes for mechano-sensing in five tropical species. Most of the gene sequences were polymorphic in most species.
Keywords: Population genomics; Functional gene; Mechanical signals; Fabaceae
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