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Clair, B.; Almeras, T.; Yamamoto, H.; Okuyama, T.; Sugiyama, J. |
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Title |
Mechanical behavior of cellulose microfibrils in tension wood, in relation with maturation stress generation |
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Journal Article |
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2006 |
Publication |
Biophysical Journal |
Abbreviated Journal |
Biophys. J. |
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91 |
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3 |
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1128-1135 |
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A change in cellulose lattice spacing can be detected during the release of wood maturation stress by synchrotron x-ray diffraction experiment. The lattice strain was found to be the same order of magnitude as the macroscopic strain. The fiber repeat distance, 1.033 nm evaluated for tension wood after the release of maturation stress was equal to the conventional wood values, whereas the value before stress release was larger, corresponding to a fiber repeat of 1.035 nm, nearly equal to that of cotton and ramie. Interestingly, the fiber repeat varied from 1.033 nm for wood to 1.040 nm for algal cellulose, with an increasing order of lateral size of cellulose microfibrils so far reported. These lines of experiments demonstrate that, before the stress release, the cellulose was in a state of tension, which is, to our knowledge, the first experimental evidence supporting the assumption that tension is induced in cellulose microfibrils. |
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Kyoto Univ, Res Inst Sustainable Humanosphere, Uji, Kyoto, Japan, Email: sugiyama@rish.kyoto-u.ac.jp |
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BIOPHYSICAL SOCIETY |
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0006-3495 |
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ISI:000239086800039 |
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EcoFoG @ eric.marcon @ |
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224 |
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Barr, Cheryl B. ; Cerdan, Axel ; Clavier, Simon ; Murienne, Jérôme |
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Title |
Amazonopsis cerdani (Coleoptera: Elmidae: Elminae), a New Species of RiffleBeetle from French Guiana with Habitat Observations |
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Journal Article |
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Year |
2021 |
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The Coleopterists Bulletin |
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75 |
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2 |
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427-439 |
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A third species of Amazonopsis , Amazonopsis cerdani Barr and Cerdan, new species (Coleoptera: Elmidae), is herein described from French Guiana. One female paratype of Amazonopsis theranyi Barr from Peru is tentatively reassigned to A. cerdani as a non-paratype. Photographic images of the male and female habitus, and the male genitalia, are provided, as is a distribution map and a key to the species. Amazonopsis cerdani differs from A. theranyi from Peru and Amazonopsis camachoi Barr from Venezuela by the presence of prominent spines on protarsomeres 1–4 of males, among other characters. The habitat of this species is small, shallow, lowland streams with sandy-silty substrates and low flow. Specimens were collected from unconsolidated leaf litter in depositional areas, and from stick and leaf packs lodged in the current. Genetic analysis conducted on three specimens from two localities, a male and two females, showed that they are conspecific. |
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BioOne |
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EcoFoG @ webmaster @ |
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1035 |
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Brousseau, L.; Tinaut, A.; Duret, C.; Lang, T.; Garnier-Gere, P.; Scotti, I. |
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Title |
High-throughput transcriptome sequencing and preliminary functional analysis in four Neotropical tree species |
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Journal Article |
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Year |
2014 |
Publication |
BMC Genomics |
Abbreviated Journal |
BMC Genomics |
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Volume |
15 |
Issue |
238 |
Pages |
1-13 |
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Keywords |
454-Pyrosequencing; Polymorphism discovery; Tropical rainforest tree species |
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Background: The Amazonian rainforest is predicted to suffer from ongoing environmental changes. Despite the need to evaluate the impact of such changes on tree genetic diversity, we almost entirely lack genomic resources. Results: In this study, we analysed the transcriptome of four tropical tree species (Carapa guianensis, Eperua falcata, Symphonia globulifera and Virola michelii) with contrasting ecological features, belonging to four widespread botanical families (respectively Meliaceae, Fabaceae, Clusiaceae and Myristicaceae). We sequenced cDNA libraries from three organs (leaves, stems, and roots) using 454 pyrosequencing. We have developed an R and bioperl-based bioinformatic procedure for de novo assembly, gene functional annotation and marker discovery. Mismatch identification takes into account single-base quality values as well as the likelihood of false variants as a function of contig depth and number of sequenced chromosomes. Between 17103 (for Symphonia globulifera) and 23390 (for Eperua falcata) contigs were assembled. Organs varied in the numbers of unigenes they apparently express, with higher number in roots. Patterns of gene expression were similar across species, with metabolism of aromatic compounds standing out as an overrepresented gene function. Transcripts corresponding to several gene functions were found to be over- or underrepresented in each organ. We identified between 4434 (for Symphonia globulifera) and 9076 (for Virola surinamensis) well-supported mismatches. The resulting overall mismatch density was comprised between 0.89 (S. globulifera) and 1.05 (V. surinamensis) mismatches/100 bp in variation-containing contigs.Conclusion: The relative representation of gene functions in the four transcriptomes suggests that secondary metabolism may be particularly important in tropical trees. The differential representation of transcripts among tissues suggests differential gene expression, which opens the way to functional studies in these non-model, ecologically important species. We found substantial amounts of mismatches in the four species. These newly identified putative variants are a first step towards acquiring much needed genomic resources for tropical tree species. © 2014 Brousseau et al.; licensee BioMed Central Ltd. |
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BIOGECO, UMR 1202, University of Bordeaux, F-33400 Talence, France |
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BioMed Central Ltd. |
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14712164 (Issn) |
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Export Date: 18 April 2014; Source: Scopus; Art. No.: 238; Coden: Bgmee; Language of Original Document: English; Correspondence Address: Scotti, I.; INRA, UMR 0745 EcoFoG, Campus agronomique BP 709, F-97387 Cedex, France; email: ivan.scotti@ecofog.gf |
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EcoFoG @ webmaster @ |
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537 |
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Dezecache, C.; Salles, J.-M.; Herault, B. |
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Questioning emissions-based approaches for the definition of REDD+ deforestation baselines in high forest cover/low deforestation countries |
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Journal Article |
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Year |
2018 |
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Carbon Balance Manage. |
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13 |
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21 |
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Baseline; Deforestation; Guiana Shield; HFLD countries; Redd+; Reference level; Spatial modelling |
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Background: REDD+ is being questioned by the particular status of High Forest/Low Deforestation countries. Indeed, the formulation of reference levels is made difficult by the confrontation of low historical deforestation records with the forest transition theory on the one hand. On the other hand, those countries might formulate incredibly high deforestation scenarios to ensure large payments even in case of inaction. Results: Using a wide range of scenarios within the Guiana Shield, from methods involving basic assumptions made from past deforestation, to explicit modelling of deforestation using relevant socio-economic variables at the regional scale, we show that the most common methodologies predict huge increases in deforestation, unlikely to happen given the existing socio-economic situation. More importantly, it is unlikely that funds provided under most of these scenarios could compensate for the total cost of avoided deforestation in the region, including social and economic costs. Conclusion: This study suggests that a useful and efficient international mechanism should really focus on removing the underlying political and socio-economic forces of deforestation rather than on hypothetical result-based payments estimated from very questionable reference levels. |
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BioMed Central Ltd. |
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17500680 (Issn) |
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EcoFoG @ webmaster @ |
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837 |
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Audigeos, D.; Buonamici, A.; Belkadi, L.; Rymer, P.; Boshier, D.; Scotti-Saintagne, C.; Vendramin, G.G.; Scotti, I. |
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Title |
Aquaporins in the wild: natural genetic diversity and selective pressure in the PIP gene family in five Neotropical tree species |
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Journal Article |
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Year |
2010 |
Publication |
BMC Evolutionary Biology |
Abbreviated Journal |
BMC Evol. Biol. |
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10 |
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18 |
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Background: Tropical trees undergo severe stress through seasonal drought and flooding, and the ability of these species to respond may be a major factor in their survival in tropical ecosystems, particularly in relation to global climate change. Aquaporins are involved in the regulation of water flow and have been shown to be involved in drought response; they may therefore play a major adaptive role in these species. We describe genetic diversity in the PIP sub-family of the widespread gene family of Aquaporins in five Neotropical tree species covering four botanical families. Results: PIP Aquaporin subfamily genes were isolated, and their DNA sequence polymorphisms characterised in natural populations. Sequence data were analysed with statistical tests of standard neutral equilibrium and demographic scenarios simulated to compare with the observed results. Chloroplast SSRs were also used to test demographic transitions. Most gene fragments are highly polymorphic and display signatures of balancing selection or bottlenecks; chloroplast SSR markers have significant statistics that do not conform to expectations for population bottlenecks. Although not incompatible with a purely demographic scenario, the combination of all tests tends to favour a selective interpretation of extant gene diversity. Conclusions: Tropical tree PIP genes may generally undergo balancing selection, which may maintain high levels of genetic diversity at these loci. Genetic variation at PIP genes may represent a response to variable environmental conditions. |
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Address |
[Audigeos, Delphine; Belkadi, Laurent; Scotti-Saintagne, Caroline; Scotti, Ivan] INRA, UMR EcoFoG Ecol Forets Guyane 0745, Kourou 97387, French Guiana, Email: ivan.scotti@cirad.fr |
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BIOMED CENTRAL LTD |
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1471-2148 |
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ISI:000280369200002 |
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no |
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EcoFoG @ eric.marcon @ |
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47 |
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Degen, B.; Roubilk, D.W. |
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Title |
Effects of animal pollination on pollen dispersal, selfing, and effective population size of tropical trees: A simulation study |
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Journal Article |
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2004 |
Publication |
Biotropica |
Abbreviated Journal |
Biotropica |
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36 |
Issue |
2 |
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165-179 |
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Amazon; bees; Brazil; Dipteryx; Jacaranda; model; pollination; sensitivity analysis; trees |
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Animals, especially insects, are principal pollen vectors of tropical trees and have behavior patterns that affect gene dispersal. Here, we explore complex pollination systems using a new simulation model Eco-Gene and considering, among other factors, flowering synchrony. spatial distribution of trees, degree of selfing, population densities, pollinator flight distances, pollen deposition, and pollinator response to floral display size. Sensitivity analyses using two contrasting tree data sets (Jacaranda copaia and Dipteryx odorata) determined the importance of each parameter on three response variables: the proportion of seeds from self-pollination, effective population size, and pollen dispersal. Spatial considerations and attractiveness of floral displays were prominent features determining the population genetic result of pollinators, and some biological implications of the results are discussed. |
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INRA, Kourou 97387, French Guiana, Email: degen_b@kourou.cirad.fr |
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ASSOC TROPICAL BIOLOGY INC |
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0006-3606 |
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ISI:000222092900006 |
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no |
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EcoFoG @ eric.marcon @ |
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264 |
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Denis, T.; Herault, B.; Jaouen, G.; Brunaux, O.; Guitet, S.; Richard-Hansen, C. |
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Title |
Black Curassow habitat relationships in terra firme forests of the Guiana Shield: A multiscale approach |
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Journal Article |
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2016 |
Publication |
The Condor |
Abbreviated Journal |
The Condor |
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118 |
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2 |
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253-273 |
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ABSTRACT The Black Curassow (Crax alector) is a large game bird with Vulnerable conservation status found in north-central South America. We examined its distributional pattern across French Guiana using a large number of environmental descriptors at 3 scales of analysis: landscape, forest type, and microhabitat. We used a hierarchical model with temporary emigration and imperfect detection for data collected by standard distance sampling methods at 35 study sites. At the landscape scale, Black Curassow density decreased with hunting pressure and increased with steeper slopes in both hunted and unhunted areas. Topography appeared to be a good proxy for Black Curassow ecological requirements and probably reflected habitat quality. At the forest scale, population density was negatively correlated with the abundance of palms and Mimosoideae and positively correlated with the abundance of Lauraceae. Botanical families did not directly influence Black Curassow distribution, but rather determined spatial patterns by being markers of a particular forest type. At the microhabitat scale, Black Curassows used hilltops more frequently than other parts of the local topographical gradient. Our multiscale analysis shows that this species' distribution can be explained by biotic or abiotic conditions, regardless of the scale. For conservation, we recommend maintaining connectivity between Black Curassow populations separated by hunted areas. Our predicted densities could be used to adapt hunting quotas across French Guiana's forests. We show that combining field and remote sensing data helps to understand the ecological processes responsible for Black Curassow habitat relationships. |
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American Ornithological Society |
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0010-5422 |
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doi: 10.1650/CONDOR-15-28.1 |
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EcoFoG @ webmaster @ |
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714 |
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Van Langenhove, Leandro ; Depaepe, Thomas ; Verryckt, Lore T. ; Vallicrosa, Helena ; Fuchslueger, Lucia ; Lugli, Laynara F. ; Bréchet, Laëtitia M. ; Ogaya, Roma ; Llusia, Joan ; Urbina, Ifigenia ; Gargallo-Garriga, Albert ; Grau, Oriol ; Richter, Andreas ; Penuelas, Josep ; Van Der Straeten, Dominique ; August Janssens, Ivan A. |
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Title |
Impact of Nutrient Additions on Free-Living Nitrogen Fixation in Litter and Soil of Two French-Guianese Lowland Tropical Forests |
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Journal Article |
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Year |
2021 |
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JGR Biogeosciences |
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126 |
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7 |
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e2020JG006023 |
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In tropical forests, free-living Biological nitrogen (N) fixation (BNF) in soil and litter tends to decrease when substrate N concentrations increase, whereas increasing phosphorus (P) and molybdenum (Mo) soil and litter concentrations have been shown to stimulate free-living BNF rates. Yet, very few studies explored the effects of adding N, P, and Mo together in a single large-scale fertilization experiment, which would teach us which of these elements constrain or limit BNF activities. At two distinct forest sites in French Guiana, we performed a 3-year in situ nutrient addition study to explore the effects of N, P, and Mo additions on leaf litter and soil BNF. Additionally, we conducted a short-term laboratory study with the same nutrient addition treatments (+N, +N+P, +P, +Mo, and +P+Mo). We found that N additions alone suppressed litter free-living BNF in the field, but not in the short-term laboratory study, while litter free-living BNF remained unchanged in response to N+P additions. Additionally, we found that P and P+Mo additions stimulated BNF in leaf litter, both in the field and in the lab, while Mo alone yielded no changes. Soil BNF increased with P and P+Mo additions in only one of the field sites, while in the other site soil BNF increased with Mo and P+Mo additions. We concluded that increased substrate N concentrations suppress BNF. Moreover, both P and Mo have the potential to limit free-living BNF in these tropical forests, but the balance between P versus Mo limitation is determined by site-specific characteristics of nutrient supply and demand. |
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American Geophysical Union |
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EcoFoG @ webmaster @ |
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1040 |
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Aili, S.R.; Touchard, A.; Petitclerc, F.; Dejean, A.; Orivel, J.; Padula, M.P.; Escoubas, P.; Nicholson, G.M. |
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Combined Peptidomic and Proteomic Analysis of Electrically Stimulated and Manually Dissected Venom from the South American Bullet Ant Paraponera clavata |
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Journal Article |
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2017 |
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Journal of Proteome Research |
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J. Proteome Res. |
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16 |
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3 |
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1339-1351 |
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Ants have evolved venoms rich in peptides and proteins used for predation, defense, and communication. However, they remain extremely understudied due to the minimal amount of venom secreted by each ant. The present study investigated the differences in the proteome and peptidome of the venom from the bullet ant, Paraponera clavata. Venom samples were collected from a single colony either by manual venom gland dissection or by electrical stimulation and were compared using proteomic methods. Venom proteins were separated by 2D-PAGE and identified by nanoLC-ESI-QTOF MS/MS. Venom peptides were initially separated using C18 reversed-phase high-performance liquid chromatography, then analyzed by MALDI-TOF MS. The proteomic analysis revealed numerous proteins that could be assigned a biological function (total 94), mainly as toxins, or roles in cell regulation and transport. This investigation found that ca. 73% of the proteins were common to venoms collected by the two methods. The peptidomic analysis revealed a large number of peptides (total 309) but with <20% shared by the two collection methods. There was also a marked difference between venoms obtained by venom gland dissection from different ant colonies. These findings demonstrate the rich composition and variability of P. clavata venom. |
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American Chemical Society |
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1535-3893 |
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EcoFoG @ webmaster @ |
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746 |
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Fu, T.; Touboul, D.; Della-Negra, S.; Houel, E.; Amusant, N.; Duplais, C.; Fisher, G.L.; Brunelle, A. |
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Title |
Tandem Mass Spectrometry Imaging and in Situ Characterization of Bioactive Wood Metabolites in Amazonian Tree Species Sextonia rubra |
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Journal Article |
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Year |
2018 |
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Analytical Chemistry |
Abbreviated Journal |
Anal. Chem. |
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90 |
Issue |
12 |
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7535-7543 |
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Driven by a necessity for confident molecular identification at high spatial resolution, a new time-of-flight secondary ion mass spectrometry (TOF-SIMS) tandem mass spectrometry (tandem MS) imaging instrument has been recently developed. In this paper, the superior MS/MS spectrometry and imaging capability of this new tool is shown for natural product study. For the first time, via in situ analysis of the bioactive metabolites rubrynolide and rubrenolide in Amazonian tree species Sextonia rubra (Lauraceae), we were able both to analyze and to image by tandem MS the molecular products of natural biosynthesis. Despite the low abundance of the metabolites in the wood sample(s), efficient MS/MS analysis of these γ-lactone compounds was achieved, providing high confidence in the identification and localization. In addition, tandem MS imaging minimized the mass interferences and revealed specific localization of these metabolites primarily in the ray parenchyma cells but also in certain oil cells and, further, revealed the presence of previously unidentified γ-lactone, paving the way for future studies in biosynthesis. |
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American Chemical Society |
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0003-2700 |
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doi: 10.1021/acs.analchem.8b01157 |
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EcoFoG @ webmaster @ |
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834 |
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