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Do, N.A.; Dias, D.; Zhang, Z.; Huang, X.; Nguyen, T.T.; Pham, V.V.; Nait-Rabah, O. |
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Title |
Study on the behavior of squared and sub-rectangular tunnels using the Hyperstatic Reaction Method |
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Journal Article |
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Year |
2020 |
Publication |
Transportation Geotechnics |
Abbreviated Journal |
Transp. Geotech. |
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Volume |
22 |
Issue |
100321 |
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Keywords |
Finite element method; Lining; Squared shape; Sub-rectangular shape; Tunnel; efficiency measurement; finite element method; numerical model; transportation development; transportation planning; tunnel design; tunnel lining |
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Saint-Petersburg Mining University, Russian Federation |
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Elsevier Ltd |
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22143912 (Issn) |
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EcoFoG @ webmaster @ |
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915 |
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Author |
Duplais, C.; Papon, N.; Courdavault, V. |
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Title |
Tracking the Origin and Evolution of Plant Metabolites |
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Journal Article |
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Year |
2020 |
Publication |
Trends in Plant Science |
Abbreviated Journal |
Trends Plant Sci. |
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Volume |
25 |
Issue |
12 |
Pages |
1182-1184 |
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Keywords |
enzyme evolution; iridoids; Lamiaceae; nepetalactone; plant metabolites |
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Iridoids are monoterpenes that are produced by various plants as chemical defense molecules. Lichman et al. recently described the timeline of molecular events that underpin the re-emergence of iridoid biosynthesis in an independent lineage of aromatic plants (catnip). This study represents a benchmark for studying enzyme and metabolite evolution in different clades across the tree of life. © 2020 Elsevier Ltd |
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Biomolécules et Biotechnologies Végétales (BBV) EA 2106, Université de Tours, Tours, France |
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Elsevier Ltd |
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13601385 (Issn) |
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EcoFoG @ webmaster @ |
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937 |
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Author |
Ziegler, C.; Dusenge, M.E.; Nyirambangutse, B.; Zibera, E.; Wallin, G.; Uddling, J. |
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Title |
Contrasting Dependencies of Photosynthetic Capacity on Leaf Nitrogen in Early- and Late-Successional Tropical Montane Tree Species |
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Journal Article |
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Year |
2020 |
Publication |
Frontiers in Plant Science |
Abbreviated Journal |
Front. Plant Sci. |
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Volume |
11 |
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Pages |
500479 |
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Keywords |
allocation; early successional; late successional; nitrogen; photosynthesis; tropical montane forests |
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Differences in photosynthetic capacity among tree species and tree functional types are currently assumed to be largely driven by variation in leaf nutrient content, particularly nitrogen (N). However, recent studies indicate that leaf N content is often a poor predictor of variation in photosynthetic capacity in tropical trees. In this study, we explored the relative importance of area-based total leaf N content (Ntot) and within-leaf N allocation to photosynthetic capacity versus light-harvesting in controlling the variation in photosynthetic capacity (i.e. Vcmax, Jmax) among mature trees of 12 species belonging to either early (ES) or late successional (LS) groups growing in a tropical montane rainforest in Rwanda, Central Africa. Photosynthetic capacity at a common leaf temperature of 25˚C (i.e. maximum rates of Rubisco carboxylation, Vcmax25 and of electron transport, Jmax25) was higher in ES than in LS species (+ 58% and 68% for Vcmax25 and Jmax25, respectively). While Ntot did not significantly differ between successional groups, the photosynthetic dependency on Ntot was markedly different. In ES species, Vcmax25 was strongly and positively related to Ntot but this was not the case in LS species. However, there was no significant trade-off between relative leaf N investments in compounds maximizing photosynthetic capacity versus compounds maximizing light harvesting. Both leaf dark respiration at 25˚C (+ 33%) and, more surprisingly, apparent photosynthetic quantum yield (+ 35%) was higher in ES than in LS species. Moreover, Rd25 was positively related to Ntot for both ES and LS species. Our results imply that efforts to quantify carbon fluxes of tropical montane rainforests would be improved if they considered contrasting within-leaf N allocation and photosynthetic Ntot dependencies between species with different successional strategies. © Copyright © 2020 Ziegler, Dusenge, Nyirambangutse, Zibera, Wallin and Uddling. |
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Department of Biology, The University of Western Ontario, London, ON, Canada |
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Frontiers Media S.A. |
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1664462x (Issn) |
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EcoFoG @ webmaster @ |
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953 |
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Author |
Servigne, P.; Orivel, J.; Azémar, F.; Carpenter, J.; Dejean, A.; Corbara, B. |
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Title |
An uneasy alliance: a nesting association between aggressive ants and equally fierce social wasps |
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Journal Article |
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Year |
2020 |
Publication |
Insect Science |
Abbreviated Journal |
Insect Science |
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27 |
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1 |
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122-132 |
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Keywords |
Azteca chartifex ants; interspecific association; mutualism; Polybia rejecta wasps; scent trail erasure |
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Although the Neotropical territorially dominant arboreal ant Azteca chartifex Forel is very aggressive towards any intruder, its populous colonies tolerate the close presence of the fierce polistine wasp Polybia rejecta (F.).
In French Guiana, 83.33% of the 48 P. rejecta nests recorded were found side by side with those of A. chartifex. This nesting association results in mutual protection from predators (i.e., the wasps protected from army ants; the ants protected from birds).
We conducted field studies, laboratory-based behavioral experiments and chemical analyses to elucidate the mechanisms allowing the persistence of this association. Due to differences in the cuticular profiles of the two species, we eliminated the possibility of chemical mimicry.
Also, analyses of the carton nests did not reveal traces of marking on the envelopes. Because ant forager flows were not perturbed by extracts from the wasps' Dufour's and venom glands, we rejected any hypothetical action of repulsive chemicals. Nevertheless, we noted that the wasps 'scraped' the surface of the upper part of their nest envelope using their mandibles, likely removing the ants' scent trails, and an experiment showed that ant foragers were perturbed by the removal of their scent trails. This leads us to use the term 'erasure hypothesis'. Thus, this nesting association persists thanks to a relative tolerance by the ants towards wasp presence and the behavior of the wasps that allows them to 'contain' their associated ants through the elimination of their scent trails, direct attacks, 'wing-buzzing' behavior and ejecting the ants. |
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John Wiley & Sons, Ltd (10.1111) |
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1672-9609 |
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doi: 10.1111/1744-7917.12597 |
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EcoFoG @ webmaster @ |
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885 |
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Tysklind, N.; Etienne, M.-P.; Scotti-Saintagne, C.; Tinaut, A.; Casalis, M.; Troispoux, V.; Cazal, S.-O.; Brousseau, L.; Ferry, B.; Scotti, I. |
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Title |
Microgeographic local adaptation and ecotype distributions: The role of selective processes on early life-history traits in sympatric, ecologically divergent Symphonia populations |
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Journal Article |
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Year |
2020 |
Publication |
Ecology and Evolution |
Abbreviated Journal |
Ecology and Evolution |
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Volume |
10 |
Issue |
19 |
Pages |
10735-10753 |
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Keywords |
determinants of plant community diversity and structure; evolutionary ecology; landscape ecology; local adaptation; Neotropical forest; plant development and life-history traits; reciprocal transplantation experiments; Symphonia |
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Abstract |
Trees are characterized by the large number of seeds they produce. Although most of those seeds will never germinate, plenty will. Of those which germinate, many die young, and eventually, only a minute fraction will grow to adult stage and reproduce. Is this just a random process? Do variations in germination and survival at very young stages rely on variations in adaptations to microgeographic heterogeneity? and do these processes matter at all in determining tree species distribution and abundance?. We have studied these questions with the Neotropical Symphonia tree species. In the Guiana shield, Symphonia are represented by at least two sympatric taxa or ecotypes, Symphonia globulifera found almost exclusively in bottomlands, and a yet undescribed more generalist taxon/ecotype, Symphonia sp1. A reciprocal transplantation experiment (510 seeds, 16 conditions) was set up and followed over the course of 6 years to evaluate the survival and performance of individuals from different ecotypes and provenances. Germination, survival, growth, and herbivory showed signs of local adaptation, with some combinations of ecotypes and provenances growing faster and surviving better in their own habitat or provenance region. S. globulifera was strongly penalized when planted outside its home habitat but showed the fastest growth rates when planted in its home habitat, suggesting it is a specialist of a high-risk high-gain strategy. Conversely, S. sp1 behaved as a generalist, performing well in a variety of environments. The differential performance of seeds and seedlings in the different habitats matches the known distribution of both ecotypes, indicating that environmental filtering at the very early stages can be a key determinant of tree species distributions, even at the microgeographic level and among very closely related taxa. Furthermore, such differential performance also contributes to explain, in part, the maintenance of the different Symphonia ecotypes living in intimate sympatry despite occasional gene flow. © 2020 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd |
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Address |
UMR AMAP, IRD, Cirad, CNRS, INRAE, Université Montpellier, Montpellier, France |
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John Wiley and Sons Ltd |
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20457758 (Issn) |
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EcoFoG @ webmaster @ |
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951 |
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Perrot, T.; Guillaume, S.; Nadine, A.; Jacques, B.; Philippe, G.; Stéphane, D.; Rodnay, S.; Mélanie, M.-R.; Eric, G. |
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Title |
A reverse chemical ecology approach to explore wood natural durability |
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Journal Article |
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Year |
2020 |
Publication |
Microbial Biotechnology |
Abbreviated Journal |
Microb. Biotechnol. |
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Volume |
13 |
Issue |
5 |
Pages |
1673-1677 |
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Keywords |
glutathione transferase; Article; biodegradation; data base; detoxification; ecology; enzyme activity; enzyme metabolism; forest; molecular dynamics; physical parameters; species identification; thermal analysis; Trametes versicolor; wood; wood durability |
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Abstract |
The natural durability of wood species, defined as their inherent resistance to wood-destroying agents, is a complex phenomenon depending on many biotic and abiotic factors. Besides the presence of recalcitrant polymers, the presence of compounds with antimicrobial properties is known to be important to explain wood durability. Based on the advancement in our understanding of fungal detoxification systems, a reverse chemical ecology approach was proposed to explore wood natural durability using fungal glutathione transferases. A set of six glutathione transferases from the white-rot Trametes versicolor were used as targets to test wood extracts from seventeen French Guiana neotropical species. Fluorescent thermal shift assays quantified interactions between fungal glutathione transferases and these extracts. From these data, a model combining this approach and wood density significantly predicts the wood natural durability of the species tested previously using long-term soil bed tests. Overall, our findings confirm that detoxification systems could be used to explore the chemical environment encountered by wood-decaying fungi and also wood natural durability. © 2020 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology. |
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Université de Lorraine, INRAE, LERMAB, Nancy, France |
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John Wiley and Sons Ltd |
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17517907 (Issn) |
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EcoFoG @ webmaster @ |
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955 |
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Binelli, G.; Montaigne, W.; Sabatier, D.; Scotti-Saintagne, C.; Scotti, I. |
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Title |
Discrepancies between genetic and ecological divergence patterns suggest a complex biogeographic history in a Neotropical genus |
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Journal Article |
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Year |
2020 |
Publication |
Ecology and Evolution |
Abbreviated Journal |
Ecology and Evolution |
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Volume |
10 |
Issue |
11 |
Pages |
4726-4738 |
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Keywords |
allopatric divergence; Amazon; Guiana Shield; interspecific gene flow; Myristicaceae; secondary contact; Virola |
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Abstract |
Phylogenetic patterns and the underlying speciation processes can be deduced from morphological, functional, and ecological patterns of species similarity and divergence. In some cases, though, species retain multiple similarities and remain almost indistinguishable; in other cases, evolutionary convergence can make such patterns misleading; very often in such cases, the “true” picture only emerges from carefully built molecular phylogenies, which may come with major surprises. In addition, closely related species may experience gene flow after divergence, thus potentially blurring species delimitation. By means of advanced inferential methods, we studied molecular divergence between species of the Virola genus (Myristicaceae): widespread Virola michelii and recently described, endemic V. kwatae, using widespread V. surinamensis as a more distantly related outgroup with different ecology and morphology—although with overlapping range. Contrary to expectations, we found that the latter, and not V. michelii, was sister to V. kwatae. Therefore, V. kwatae probably diverged from V. surinamensis through a recent morphological and ecological shift, which brought it close to distantly related V. michelii. Through the modeling of the divergence process, we inferred that gene flow between V. surinamensis and V. kwatae stopped soon after their divergence and resumed later, in a classical secondary contact event which did not erase their ecological and morphological differences. While we cannot exclude that initial divergence occurred in allopatry, current species distribution and the absence of geographical barriers make complete isolation during speciation unlikely. We tentatively conclude that (a) it is possible that divergence occurred in allopatry/parapatry and (b) secondary contact did not suppress divergence. © 2020 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd. |
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INRAE, URFM, Avignon, France |
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John Wiley and Sons Ltd |
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20457758 (Issn) |
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EcoFoG @ webmaster @ |
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963 |
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Author |
Privet, K.; Vedel, V.; Fortunel, C.; Orivel, J.; Martinez, Q.; Cerdan, A.; Baraloto, C.; Pétillon, J. |
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Title |
Relative effciency of pitfall trapping vs. nocturnal hand collecting in assessing soil-dwelling spider diversity along a structural gradient of neotropical habitats |
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Journal Article |
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Year |
2020 |
Publication |
Diversity |
Abbreviated Journal |
Diversity |
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Volume |
12 |
Issue |
2 |
Pages |
81 |
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Keywords |
Araneae; Diversity indices; Functional diversity; Guiana shield; Sampling methods; Species richness; Turnover; Araneae |
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Abstract |
Assessing spider diversity remains a great challenge, especially in tropical habitats where dozens of species can locally co-occur. Pitfall trapping is one of the most widely used techniques to collect spiders, but it suffers from several biases, and its accuracy likely varies with habitat complexity. In this study, we compared the efficiency of passive pitfall trapping versus active nocturnal hand collecting (\"HC) to capture low understory-dwelling spider taxonomical (morpho-species) and functional (hunting guilds) diversity along a structural gradient of habitats in French Guiana. We focused on four habitats describing a structural gradient: garden to the orchard to the forest edge to the undisturbed forest. Overall, estimated morpho-species richness and composition did not vary consistently between habitats, but abundances of ground-hunting spiders decreased significantly with increasing habitat complexity. We found habitat-dependence differences in taxonomic diversity between sampling strategies: NHC revealed higher diversity in the orchard, whereas pitfalls resulted in higher diversity in the forest. Species turnover resulted in high dissimilarity in species composition between habitats using either method. This study shows how pitfall trapping is influenced by habitat structure, rendering this sampling method incomplete for complex, tropical environments. However, pitfall traps remain a valuable component of inventories because they sample distinct assemblage of spiders. © 2020 by the authors. |
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International Center for Tropical Botany, Department of Biological Sciences, Florida International University, 11200 S.W. 8th Street, Miami, FL 33199, United States |
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Mdpi Ag |
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14242818 (Issn) |
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Export Date: 16 March 2020; Correspondence Address: Privet, K.; CNRS, Ecobio (Ecosystèmes, biodiversité, évolution), Université de RennesFrance; email: kprivet@hotmail.fr |
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EcoFoG @ webmaster @ |
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923 |
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Author |
Laybros, A.; Aubry-Kientz, M.; Féret, J.-B.; Bedeau, C.; Brunaux, O.; Derroire, G.; Vincent, G. |
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Title |
Quantitative airborne inventories in dense tropical forest using imaging spectroscopy |
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Journal Article |
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Year |
2020 |
Publication |
Remote Sensing |
Abbreviated Journal |
Remote Sens. |
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Volume |
12 |
Issue |
10 |
Pages |
1577 |
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Keywords |
Hyperspectral; LiDAR; Species diversity; Tropical forest; Cost effectiveness; Discriminant analysis; Infrared devices; Infrared radiation; Logistic regression; Remote sensing; Tropics; Classification accuracy; Classification performance; Linear discriminant analysis; Operational applications; Regularized discriminant analysis; Remote sensing technology; Short wave infrared bands; Visible and near infrared; Forestry |
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Abstract |
Tropical forests have exceptional floristic diversity, but their characterization remains incomplete, in part due to the resource intensity of in-situ assessments. Remote sensing technologies can provide valuable, cost-effective, large-scale insights. This study investigates the combined use of airborne LiDAR and imaging spectroscopy to map tree species at landscape scale in French Guiana. Binary classifiers were developed for each of 20 species using linear discriminant analysis (LDA), regularized discriminant analysis (RDA) and logistic regression (LR). Complementing visible and near infrared (VNIR) spectral bands with short wave infrared (SWIR) bands improved the mean average classification accuracy of the target species from 56.1% to 79.6%. Increasing the number of non-focal species decreased the success rate of target species identification. Classification performance was not significantly affected by impurity rates (confusion between assigned classes) in the non-focal class (up to 5% of bias), provided that an adequate criterion was used for adjusting threshold probability assignment. A limited number of crowns (30 crowns) in each species class was sufficient to retrieve correct labels effectively. Overall canopy area of target species was strongly correlated to their basal area over 118 ha at 1.5 ha resolution, indicating that operational application of the method is a realistic prospect (R2 = 0.75 for six major commercial tree species). © 2020 by the authors. |
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Address |
Cirad, UMR EcoFoG (AgroParistech, CNRS, INRAE, Université des Antilles, Université de la Guyane), Kourou, French Guiana, 97379, France |
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Mdpi Ag |
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20724292 (Issn) |
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EcoFoG @ webmaster @ |
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969 |
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Author |
Aili, S.R.; Touchard, A.; Hayward, R.; Robinson, S.D.; Pineda, S.S.; Lalagüe, H.; Mrinalini; Vetter, I.; Undheim, E.A.B.; Kini, R.M.; Escoubas, P.; Padula, M.P.; Myers, G.S.A.; Nicholson, G.M. |
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An integrated proteomic and transcriptomic analysis reveals the venom complexity of the bullet ant Paraponera clavata |
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Journal Article |
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Year |
2020 |
Publication |
Toxins |
Abbreviated Journal |
Toxins |
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Volume |
12 |
Issue |
5 |
Pages |
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Keywords |
DRG neurons; Hyaluronidase; Neurotoxins; Paraponeritoxin; Phospholipases; Rp-Hplc; alpha latrotoxin; ant venom; arginine kinase; cathepsin; contig; defensin 2; hyaluronidase; icarapin; metalloproteinase; neurotoxin; novel toxin like protein; phospholipase; phospholipase A2; poneratoxin; proteome; serine proteinase; transcriptome; unclassified drug; amino acid sequence; ant; Article; liquid chromatography-mass spectrometry; neurotoxicity; nonhuman; Paraponera clavata; protein expression; proteomics; sequence database; tandem mass spectrometry; transcriptomics; venom gland |
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Abstract |
A critical hurdle in ant venom proteomic investigations is the lack of databases to comprehensively and specifically identify the sequence and function of venom proteins and peptides. To resolve this, we used venom gland transcriptomics to generate a sequence database that was used to assign the tandem mass spectrometry (MS) fragmentation spectra of venom peptides and proteins to specific transcripts. This was performed alongside a shotgun liquid chromatography-mass spectrometry (LC-MS/MS) analysis of the venom to confirm that these assigned transcripts were expressed as proteins. Through the combined transcriptomic and proteomic investigation of Paraponera clavata venom, we identified four times the number of proteins previously identified using 2D-PAGE alone. In addition to this, by mining the transcriptomic data, we identified several novel peptide sequences for future pharmacological investigations, some of which conform with inhibitor cysteine knot motifs. These types of peptides have the potential to be developed into pharmaceutical or bioinsecticide peptides. © 2020 by the authors. Licensee MDPI, Basel, Switzerland. |
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Faculty of Science, University of Nice, Nice, 06000, France |
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Publisher |
Mdpi Ag |
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Series Volume |
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Edition |
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ISSN |
20726651 (Issn) |
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Conference |
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Notes |
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Approved |
no |
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Call Number |
EcoFoG @ webmaster @ |
Serial |
972 |
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