| Records |
| Author |
Verryckt, L.T.; Ellsworth, D.S.; Vicca, S.; Van Langenhove, L.; Peñuelas, J.; Ciais, P.; Posada, J.M.; Stahl, C.; Coste, S.; Courtois, E.A.; Obersteiner, M.; Chave, J.; Janssens, I.A. |
| Title |
Can light-saturated photosynthesis in lowland tropical forests be estimated by one light level? |
Type |
Journal Article |
| Year |
2020 |
Publication |
Biotropica |
Abbreviated Journal |
Biotropica |
| Volume |
52 |
Issue |
6 |
Pages |
1183-1193 |
| Keywords |
canopy architecture; interspecific variation; light intensity; lowland environment; parameter estimation; photon flux density; photosynthesis; saturation; tropical forest; French Guiana |
| Abstract |
Leaf-level net photosynthesis (An) estimates and associated photosynthetic parameters are crucial for accurately parameterizing photosynthesis models. For tropical forests, such data are poorly available and collected at variable light conditions. To avoid over- or underestimation of modeled photosynthesis, it is critical to know at which photosynthetic photon flux density (PPFD) photosynthesis becomes light-saturated. We studied the dependence of An on PPFD in two tropical forests in French Guiana. We estimated the light saturation range, including the lowest PPFD level at which Asat (An at light saturation) is reached, as well as the PPFD range at which Asat remained unaltered. The light saturation range was derived from photosynthetic light-response curves, and within-canopy and interspecific differences were studied. We observed wide light saturation ranges of An. Light saturation ranges differed among canopy heights, but a PPFD level of 1,000 µmol m−2 s−1 was common across all heights, except for pioneer trees species that did not reach light saturation below 2,000 µmol m−2 s−1. A light intensity of 1,000 µmol m−2 s−1 sufficed for measuring Asat of climax species at our study sites, independent of the species or the canopy height. Because of the wide light saturation ranges, results from studies measuring Asat at higher PPFD levels (for upper canopy leaves up to 1,600 µmol m−2 s−1) are comparable with studies measuring at 1,000 µmol m−2 s−1. © 2020 The Association for Tropical Biology and Conservation |
| Address |
UMR 5174, Laboratoire Evolution et Diversité Biologique, CNRS, Université Paul Sabatier, Toulouse, France |
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Blackwell Publishing Ltd |
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00063606 (Issn) |
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no |
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EcoFoG @ webmaster @ |
Serial |
948 |
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| Author |
Schmitt, S.; Hérault, B.; Ducouret, É.; Baranger, A.; Tysklind, N.; Heuertz, M.; Marcon, É.; Cazal, S.O.; Derroire, G. |
| Title |
Topography consistently drives intra- and inter-specific leaf trait variation within tree species complexes in a Neotropical forest |
Type |
Journal Article |
| Year |
2020 |
Publication |
Oikos |
Abbreviated Journal |
Oikos |
| Volume |
129 |
Issue |
10 |
Pages |
1521-1530 |
| Keywords |
intraspecific variability; leaf traits; Paracou; species complex; syngameon; tropical forests; Bayesian analysis; coexistence; divergence; genetic variation; hierarchical system; leaf area; local adaptation; niche overlap; species diversity; topography; tropical forest; Guyana Shield |
| Abstract |
Tropical forests shelter the highest species diversity worldwide, although genus diversity is lower than expected. In the species-rich genera, species complexes are composed of closely-related species that share large amounts of genetic variation. Despite the key role of species complexes in diversification, evolution and functioning of ecological communities, little is known on why species complexes arise and how they are maintained in Neotropical forests. Examining how individual phenotypes vary along environmental gradients, within and among closely-related species within species complexes, can reveal processes allowing species coexistence within species complexes. We examined leaf functional trait variation with topography in a hyperdiverse tropical forest of the Guiana Shield. We collected leaf functional traits from 766 trees belonging to five species in two species complexes in permanent plots encompassing a diversity of topographic positions. We tested the role of topography on leaf functional trait variation with a hierarchical Bayesian model, controlling for individual tree diameter effect. We show that, mirroring what has been previously observed among species and communities, individual leaf traits covary from acquisitive to conservative strategy within species. Moreover, decreasing wetness from bottomlands to plateaus was associated with a shift of leaf traits from an acquisitive to a conservative strategy both across and within closely-related species. Our results suggest that intraspecific trait variability widens species’ niches and converges at species’ margins where niches overlap, potentially implying local neutral processes. Intraspecific trait variability favors local adaptation and divergence of closely-related species within species complexes. It is potentially maintained through interspecific sharing of genetic variation through hybridization. © 2020 Nordic Society Oikos. Published by John Wiley & Sons Ltd |
| Address |
INRAE, UMR EcoFoG (Agroparistech, CNRS, Cirad, Université des Antilles, Univ. de la Guyane), Kourou, French Guiana |
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Blackwell Publishing Ltd |
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00301299 (Issn) |
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no |
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EcoFoG @ webmaster @ |
Serial |
950 |
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| Author |
Levionnois, S.; Ziegler, C.; Jansen, S.; Calvet, E.; Coste, S.; Stahl, C.; Salmon, C.; Delzon, S.; Guichard, C.; Heuret, P. |
| Title |
Vulnerability and hydraulic segmentations at the stem–leaf transition: coordination across Neotropical trees |
Type |
Journal Article |
| Year |
2020 |
Publication |
New Phytologist |
Abbreviated Journal |
New Phytol. |
| Volume |
228 |
Issue |
2 |
Pages |
512-524 |
| Keywords |
drought-induced embolism resistance; hydraulic segmentation; leaf-specific conductivity; stem–leaf transition; tropical trees; vulnerability segmentation; air bubble; hydraulic conductivity; leaf; Neotropical Region; rainforest; tropical forest; vulnerability; xylem |
| Abstract |
Hydraulic segmentation at the stem–leaf transition predicts higher hydraulic resistance in leaves than in stems. Vulnerability segmentation, however, predicts lower embolism resistance in leaves. Both mechanisms should theoretically favour runaway embolism in leaves to preserve expensive organs such as stems, and should be tested for any potential coordination. We investigated the theoretical leaf-specific conductivity based on an anatomical approach to quantify the degree of hydraulic segmentation across 21 tropical rainforest tree species. Xylem resistance to embolism in stems (flow-centrifugation technique) and leaves (optical visualization method) was quantified to assess vulnerability segmentation. We found a pervasive hydraulic segmentation across species, but with a strong variability in the degree of segmentation. Despite a clear continuum in the degree of vulnerability segmentation, eight species showed a positive vulnerability segmentation (leaves less resistant to embolism than stems), whereas the remaining species studied exhibited a negative or no vulnerability segmentation. The degree of vulnerability segmentation was positively related to the degree of hydraulic segmentation, such that segmented species promote both mechanisms to hydraulically decouple leaf xylem from stem xylem. To what extent hydraulic and vulnerability segmentation determine drought resistance requires further integration of the leaf–stem transition at the whole-plant level, including both xylem and outer xylem tissue. © 2020 The Authors. New Phytologist © 2020 New Phytologist Trust |
| Address |
Univ. Bordeaux, INRAE, BIOGECO, Pessac, F-33615, France |
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Blackwell Publishing Ltd |
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0028646x (Issn) |
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no |
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EcoFoG @ webmaster @ |
Serial |
952 |
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| Author |
Longo, M.; Saatchi, S.; Keller, M.; Bowman, K.; Ferraz, A.; Moorcroft, P.R.; Morton, D.C.; Bonal, D.; Brando, P.; Burban, B.; Derroire, G.; dos-Santos, M.N.; Meyer, V.; Saleska, S.; Trumbore, S.; Vincent, G. |
| Title |
Impacts of Degradation on Water, Energy, and Carbon Cycling of the Amazon Tropical Forests |
Type |
Journal Article |
| Year |
2020 |
Publication |
Journal of Geophysical Research: Biogeosciences |
Abbreviated Journal |
J. Geophys. Res. Biogeosci. |
| Volume |
125 |
Issue |
8 |
Pages |
e2020JG005677 |
| Keywords |
Amazon; drought; ecosystem modeling; evapotranspiration; forest degradation; remote sensing; carbon cycle; deforestation; dry season; evapotranspiration; hydrological cycle; logging (timber); net primary production; remote sensing; sensible heat flux; tropical forest; understory; water stress; Amazon River |
| Abstract |
Selective logging, fragmentation, and understory fires directly degrade forest structure and composition. However, studies addressing the effects of forest degradation on carbon, water, and energy cycles are scarce. Here, we integrate field observations and high-resolution remote sensing from airborne lidar to provide realistic initial conditions to the Ecosystem Demography Model (ED-2.2) and investigate how disturbances from forest degradation affect gross primary production (GPP), evapotranspiration (ET), and sensible heat flux (H). We used forest structural information retrieved from airborne lidar samples (13,500 ha) and calibrated with 817 inventory plots (0.25 ha) across precipitation and degradation gradients in the eastern Amazon as initial conditions to ED-2.2 model. Our results show that the magnitude and seasonality of fluxes were modulated by changes in forest structure caused by degradation. During the dry season and under typical conditions, severely degraded forests (biomass loss ≥66%) experienced water stress with declines in ET (up to 34%) and GPP (up to 35%) and increases of H (up to 43%) and daily mean ground temperatures (up to 6.5°C) relative to intact forests. In contrast, the relative impact of forest degradation on energy, water, and carbon cycles markedly diminishes under extreme, multiyear droughts, as a consequence of severe stress experienced by intact forests. Our results highlight that the water and energy cycles in the Amazon are driven by not only climate and deforestation but also the past disturbance and changes of forest structure from degradation, suggesting a much broader influence of human land use activities on the tropical ecosystems. ©2020. The Authors. |
| Address |
AMAP, Univ Montpellier, IRD, CIRAD, CNRS, INRAE, Montpellier, France |
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| Publisher |
Blackwell Publishing Ltd |
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21698953 (Issn) |
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no |
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EcoFoG @ webmaster @ |
Serial |
957 |
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| Author |
Verryckt, L.T.; Van Langenhove, L.; Ciais, P.; Courtois, E.A.; Vicca, S.; Peñuelas, J.; Stahl, C.; Coste, S.; Ellsworth, D.S.; Posada, J.M.; Obersteiner, M.; Chave, J.; Janssens, I.A. |
| Title |
Coping with branch excision when measuring leaf net photosynthetic rates in a lowland tropical forest |
Type |
Journal Article |
| Year |
2020 |
Publication |
Biotropica |
Abbreviated Journal |
Biotropica |
| Volume |
52 |
Issue |
4 |
Pages |
608-615 |
| Keywords |
branch cutting; canopy physiology; French Guiana; gas exchange; photosynthesis; rainforest; stomatal conductance; ecological modeling; environmental conditions; forest canopy; leaf; measurement method; photosynthesis; tree; tropical forest; Gruidae |
| Abstract |
Measuring leaf gas exchange from canopy leaves is fundamental for our understanding of photosynthesis and for a realistic representation of carbon uptake in vegetation models. Since canopy leaves are often difficult to reach, especially in tropical forests with emergent trees up to 60 m at remote places, canopy access techniques such as canopy cranes or towers have facilitated photosynthetic measurements. These structures are expensive and therefore not very common. As an alternative, branches are often cut to enable leaf gas exchange measurements. The effect of branch excision on leaf gas exchange rates should be minimized and quantified to evaluate possible bias. We compared light-saturated leaf net photosynthetic rates measured on excised and intact branches. We selected branches positioned at three canopy positions, estimated relative to the top of the canopy: upper sunlit foliage, middle canopy foliage, and lower canopy foliage. We studied the variation of the effects of branch excision and transport among branches at these different heights in the canopy. After excision and transport, light-saturated leaf net photosynthetic rates were close to zero for most leaves due to stomatal closure. However, when the branch had acclimated to its new environmental conditions—which took on average 20 min—light-saturated leaf net photosynthetic rates did not significantly differ between the excised and intact branches. We therefore conclude that branch excision does not affect the measurement of light-saturated leaf net photosynthesis, provided that the branch is recut under water and is allowed sufficient time to acclimate to its new environmental conditions. © 2020 The Association for Tropical Biology and Conservation |
| Address |
UMR 5174 Laboratoire Evolution et Diversité Biologique, Université Paul Sabatier, CNRS, Toulouse, France |
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Blackwell Publishing Ltd |
Place of Publication |
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Edition |
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00063606 (Issn) |
ISBN |
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no |
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EcoFoG @ webmaster @ |
Serial |
960 |
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Schimann, H.; Vleminckx, J.; Baraloto, C.; Engel, J.; Jaouen, G.; Louisanna, E.; Manzi, S.; Sagne, A.; Roy, M. |
| Title |
Tree communities and soil properties influence fungal community assembly in neotropical forests |
Type |
Journal Article |
| Year |
2020 |
Publication |
Biotropica |
Abbreviated Journal |
Biotropica |
| Volume |
52 |
Issue |
3 |
Pages |
444-456 |
| Keywords |
communities; composition; diversity; habitat; lowland neotropical rain forest; macrofungi; soil properties; trees; ectomycorrhiza; fungus; heterogeneity; Neotropical Region; physicochemical property; rainforest; species inventory; species richness; tree; tropical forest; French Guiana; Agaricales; Aphyllophorales; Basidiomycota |
| Abstract |
The influence exerted by tree communities, topography, and soil chemistry on the assembly of macrofungal communities remains poorly understood, especially in highly diverse tropical forests. Here, we used a large dataset that combines inventories of macrofungal Basidiomycetes fruiting bodies, tree species composition, and measurements for 16 soil physicochemical parameters, collected in 34 plots located in four sites of lowland rain forests in French Guiana. Plots were established on three different topographical conditions: hilltop, slope, and seasonally flooded soils. We found hyperdiverse Basidiomycetes communities, mainly comprising members of Agaricales and Polyporales. Phosphorus, clay contents, and base saturation in soils strongly varied across plots and shaped the richness and composition of tree communities. The latter composition explained 23% of the variation in the composition of macrofungal communities, probably through high heterogeneity of the litter chemistry and selective effects of biotic interactions. The high local heterogeneity of habitats influenced the distribution of both macrofungi and trees, as a result of diversed local soil hydromorphic conditions associated with contrasting soil chemistry. This first regional study across habitats of French Guiana forests revealed new niches for macrofungi, such as ectomycorrhizal ones, and illustrates how macrofungi inventories are still paramount to can be to understand the processes at work in the tropics. Abstract in Spanish is available with online material. © 2020 The Association for Tropical Biology and Conservation |
| Address |
Laboratoire Évolution et Diversité Biologique, CNRS, UMR 5174 UPS CNRS ENFA IRD, Université Toulouse 3 Paul Sabatier, Toulouse, France |
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Blackwell Publishing Ltd |
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00063606 (Issn) |
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no |
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EcoFoG @ webmaster @ |
Serial |
968 |
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Birer, C.; Moreau, C.S.; Tysklind, N.; Zinger, L.; Duplais, C. |
| Title |
Disentangling the assembly mechanisms of ant cuticular bacterial communities of two Amazonian ant species sharing a common arboreal nest |
Type |
Journal Article |
| Year |
2020 |
Publication |
Molecular Ecology |
Abbreviated Journal |
Mol. Ecol. |
| Volume |
29 |
Issue |
7 |
Pages |
1372-1385 |
| Keywords |
ant gardens; bacterial communities; cuticular microbiome; insect cuticle; metabarcoding |
| Abstract |
Bacteria living on the cuticle of ants are generally studied for their protective role against pathogens, especially in the clade of fungus-growing ants. However, little is known regarding the diversity of cuticular bacteria in other ant host species, as well as the mechanisms leading to the composition of these communities. Here, we used 16S rRNA gene amplicon sequencing to study the influence of host species, species interactions and the pool of bacteria from the environment on the assembly of cuticular bacterial communities on two phylogenetically distant Amazonian ant species that frequently nest together inside the roots system of epiphytic plants, Camponotus femoratus and Crematogaster levior. Our results show that (a) the vast majority of the bacterial community on the cuticle is shared with the nest, suggesting that most bacteria on the cuticle are acquired through environmental acquisition, (b) 5.2% and 2.0% of operational taxonomic units (OTUs) are respectively specific to Ca. femoratus and Cr. levior, probably representing their respective core cuticular bacterial community, and (c) 3.6% of OTUs are shared between the two ant species. Additionally, mass spectrometry metabolomics analysis of metabolites on the cuticle of ants, which excludes the detection of cuticular hydrocarbons produced by the host, were conducted to evaluate correlations among bacterial OTUs and m/z ion mass. Although some positive and negative correlations are found, the cuticular chemical composition was weakly species-specific, suggesting that cuticular bacterial communities are prominently environmentally acquired. Overall, our results suggest the environment is the dominant source of bacteria found on the cuticle of ants. © 2020 John Wiley & Sons Ltd |
| Address |
Institut de Biologie de l’Ecole Normale Supérieure (IBENS), Ecole Normale Supérieure, CNRS, INSERM, PSL Université Paris, Paris, France |
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Blackwell Publishing Ltd |
Place of Publication |
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Summary Language |
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Series Issue |
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Edition |
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| ISSN |
09621083 (Issn) |
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no |
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EcoFoG @ webmaster @ |
Serial |
975 |
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| Author |
Fortunel, C.; Stahl, C.; Heuret, P.; Nicolini, E.; Baraloto, C. |
| Title |
Disentangling the effects of environment and ontogeny on tree functional dimensions for congeneric species in tropical forests |
Type |
Journal Article |
| Year |
2020 |
Publication |
New Phytologist |
Abbreviated Journal |
New Phytol. |
| Volume |
226 |
Issue |
2 |
Pages |
385-395 |
| Keywords |
chemistry; developmental stage; habitats; Micropholis; morphology; physiology; plant traits; seasons; developmental stage; ecosystem function; forest ecosystem; habitat selection; habitat structure; nutrient availability; ontogeny; physiological response; soil water; taxonomy; tropical forest; Amazonia |
| Abstract |
Soil water and nutrient availability are key drivers of tree species distribution and forest ecosystem functioning, with strong species differences in water and nutrient use. Despite growing evidence for intraspecific trait differences, it remains unclear under which circumstances the effects of environmental gradients trump those of ontogeny and taxonomy on important functional dimensions related to resource use, particularly in tropical forests. Here, we explore how physiological, chemical, and morphological traits related to resource use vary between life stages in four species within the genus Micropholis that is widespread in lowland Amazonia. Specifically, we evaluate how environment, developmental stage, and taxonomy contribute to single-trait variation and multidimensional functional strategies. We find that environment, developmental stage, and taxonomy differentially contribute to functional dimensions. Habitats and seasons shape physiological and chemical traits related to water and nutrient use, whereas developmental stage and taxonomic identity impact morphological traits –especially those related to the leaf economics spectrum. Our findings suggest that combining environment, ontogeny, and taxonomy allows for a better understanding of important functional dimensions in tropical trees and highlights the need for integrating tree physiological and chemical traits with classically used morphological traits to improve predictions of tropical forests’ responses to environmental change. © 2019 The Authors New Phytologist © 2019 New Phytologist Trust |
| Address |
Department of Biological Sciences, Florida International University, Miami, FL 33133, United States |
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Blackwell Publishing Ltd |
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0028646x (Issn) |
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no |
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EcoFoG @ webmaster @ |
Serial |
977 |
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| Author |
Sommeria-Klein, G.; Zinger, L.; Coissac, E.; Iribar, A.; Schimann, H.; Taberlet, P.; Chave, J. |
| Title |
Latent Dirichlet Allocation reveals spatial and taxonomic structure in a DNA-based census of soil biodiversity from a tropical forest |
Type |
Journal Article |
| Year |
2020 |
Publication |
Molecular Ecology Resources |
Abbreviated Journal |
Mol. Ecol. Resour. |
| Volume |
20 |
Issue |
2 |
Pages |
371-386 |
| Keywords |
community ecology; environmental DNA; metabarcoding; OTU presence–absence; soil microbiome; topic modelling; bacterium; biodiversity; biology; classification; eukaryote; fungus; genetics; high throughput sequencing; isolation and purification; microbiology; parasitology; procedures; soil; Bacteria; Biodiversity; Computational Biology; Eukaryota; Fungi; High-Throughput Nucleotide Sequencing; Soil; Soil Microbiology |
| Abstract |
High-throughput sequencing of amplicons from environmental DNA samples permits rapid, standardized and comprehensive biodiversity assessments. However, retrieving and interpreting the structure of such data sets requires efficient methods for dimensionality reduction. Latent Dirichlet Allocation (LDA) can be used to decompose environmental DNA samples into overlapping assemblages of co-occurring taxa. It is a flexible model-based method adapted to uneven sample sizes and to large and sparse data sets. Here, we compare LDA performance on abundance and occurrence data, and we quantify the robustness of the LDA decomposition by measuring its stability with respect to the algorithm's initialization. We then apply LDA to a survey of 1,131 soil DNA samples that were collected in a 12-ha plot of primary tropical forest and amplified using standard primers for bacteria, protists, fungi and metazoans. The analysis reveals that bacteria, protists and fungi exhibit a strong spatial structure, which matches the topographical features of the plot, while metazoans do not, confirming that microbial diversity is primarily controlled by environmental variation at the studied scale. We conclude that LDA is a sensitive, robust and computationally efficient method to detect and interpret the structure of large DNA-based biodiversity data sets. We finally discuss the possible future applications of this approach for the study of biodiversity. © 2019 John Wiley & Sons Ltd |
| Address |
Laboratoire d’Ecologie des Forêts de Guyane (EcoFoG, UMR 745), INRA, AgroParisTech, CIRAD, CNRS, University of the French West Indies, University of French Guiana, Kourou, France |
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Blackwell Publishing Ltd |
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1755098x (Issn) |
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no |
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EcoFoG @ webmaster @ |
Serial |
981 |
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| Author |
Marino, N.A.C.; Céréghino, R.; Gilbert, B.; Petermann, J.S.; Srivastava, D.S.; de Omena, P.M.; Bautista, F.O.; Guzman, L.M.; Romero, G.Q.; Trzcinski, M.K.; Barberis, I.M.; Corbara, B.; Debastiani, V.J.; Dézerald, O.; Kratina, P.; Leroy, C.; MacDonald, A.A.M.; Montero, G.; Pillar, V.D.; Richardson, B.A.; Richardson, M.J.; Talaga, S.; Gonçalves, A.Z.; Piccoli, G.C.O.; Jocqué, M.; Farjalla, V.F. |
| Title |
Species niches, not traits, determine abundance and occupancy patterns: A multi-site synthesis |
Type |
Journal Article |
| Year |
2020 |
Publication |
Global Ecology and Biogeography |
Abbreviated Journal |
Global Ecol. Biogeogr. |
| Volume |
29 |
Issue |
2 |
Pages |
295-308 |
| Keywords |
abundance; environmental niche; functional distinctiveness; functional traits; metacommunity; niche breadth; niche position; occupancy; abundance; biodiversity; functional group; geographical distribution; invertebrate; Neotropical Region; niche breadth; Invertebrata |
| Abstract |
Aim: Locally abundant species are usually widespread, and this pattern has been related to properties of the niches and traits of species. However, such explanations fail to account for the potential of traits to determine species niches and often overlook statistical artefacts. Here, we examine how trait distinctiveness determines the abilities of species to exploit either common habitats (niche position) or a range of habitats (niche breadth) and how niche position and breadth, in turn, affect abundance and occupancy. We also examine how statistical artefacts moderate these relationships. Location: Sixteen sites in the Neotropics. Time period: 1993–2014. Major taxa studied: Aquatic invertebrates from tank bromeliads. Methods: We measured the environmental niche position and breadth of each species and calculated its trait distinctiveness as the average trait difference from all other species at each site. Then, we used a combination of structural equation models and a meta-analytical approach to test trait–niche relationships and a null model to control for statistical artefacts. Results: The trait distinctiveness of each species was unrelated to its niche properties, abundance and occupancy. In contrast, niche position was the main predictor of abundance and occupancy; species that used the most common environmental conditions found across bromeliads were locally abundant and widespread. Contributions of niche breadth to such patterns were attributable to statistical artefacts, indicating that effects of niche breadth might have been overestimated in previous studies. Main conclusions: Our study reveals the generality of niche position in explaining one of the most common ecological patterns. The robustness of this result is underscored by the geographical extent of our study and our control of statistical artefacts. We call for a similar examination across other systems, which is an essential task to understand the drivers of commonness across the tree of life. © 2019 John Wiley & Sons Ltd |
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Aquatic and Terrestrial Ecology, Royal Belgian Institute of Natural Sciences, Brussels, Belgium |
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Blackwell Publishing Ltd |
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1466822x (Issn) |
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EcoFoG @ webmaster @ |
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991 |
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