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| Author |
Bekaert, E.; Robert, F.; Lippens, P.E.; Menetrier, M. |
| Title |
Li-7 NMR Knight Shifts in Li-Sn Compounds: MAS NMR Measurements and Correlation with DFT Calculations |
Type |
Journal Article |
| Year |
2010 |
Publication  |
Journal of Physical Chemistry C |
Abbreviated Journal |
J. Phys. Chem. C |
| Volume |
114 |
Issue |
14 |
Pages |
6749-6754 |
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| Abstract |
Several Li-Sn crystalline phases, LiSn. Li7Sn3, Li5Sn7, Li13Sn5, Li7Sn2, and Li22Sn5. were prepared by ball-milling and studied by Li-7 MAS NMR spectroscopy with silica as a chiming agent to avoid field penetration limitations All phases except for LiSn exhibit exchanged NMR signals at room temperature for the various types of Li present in the unit cells. in the 10 to 100 ppm range. Electronic structure calculations based on first-principles method led to a lather good correlation between the participation of the Li 2s orbital to the density of states (DOS) at the Fermi level and the corresponding NMR Knight shift for the two Li crystallographic types in the case of LiSn, and for the weighted average of the different crystallographic types in the case of the NMR-exchanged signals for the other compounds |
| Address |
[Bekaert, Emilie; Menetrier, Michel] Univ Bordeaux, CNRS, ICMCB, F-33608 Pessac, France |
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AMER CHEMICAL SOC |
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1932-7447 |
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ISI:000276341700075 |
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no |
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EcoFoG @ eric.marcon @ |
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80 |
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| Author |
Leroy, C.; Carrias, J.-F.; Céréghino, R.; Corbara, B. |
| Title |
The contribution of microorganisms and metazoans to mineral nutrition in bromeliads |
Type |
Journal Article |
| Year |
2016 |
Publication |
Journal of Plant Ecology |
Abbreviated Journal |
Journal of Plant Ecology |
| Volume |
9 |
Issue |
3 |
Pages |
241-255 |
| Keywords |
digestive mutualism; insect-assisted nutrients; leaf δ15N; multiple N sources; myrmecotrophy |
| Abstract |
Aims One critical challenge for plants is to maintain an adequate nutrient supply under fluctuating environmental conditions. This is particularly true for epiphytic species that have limited or no access to the pedosphere and often live in harsh climates. Bromeliads have evolved key innovations such as epiphytism, water-absorbing leaf trichomes, tank habit and Crassulacean acid metabolism (CAM) photosynthesis that enable them to survive under various environmental conditions. Bromeliads encompass diverse ecological types that live on different substrates (they can be terrestrial, epilithic or epiphytic) and vary in their ability to retain water (they can be tank-forming or tankless) and photosynthetic pathway (i.e. C3 or CAM). In this review, we outline the nutritional modes and specializations that enable bromeliads to thrive in a wide range of nutrient-poor (mostly nitrogen-depleted) environments. Important Findings Bromeliads have evolved a great diversity of morphologies and functional adaptations leading to the existence of numerous nutritional modes. Focusing on species that have absorptive foliar trichomes, we review evidence that bromeliads have evolved multi-faceted nutritional strategies to respond to fluctuations in the supply of natural nitrogen (N). These plants have developed mutualistic associations with many different and functionally diverse terrestrial and aquatic microorganisms and metazoans that contribute substantially to their mineral nutrition and, thus, their fitness and survival. Bacterial and fungal microbiota-assisted N provisioning, protocarnivory, digestive mutualisms and myrmecotrophic pathways are the main strategies used by bromeliads to acquire nitrogen. The combination of different nutritional pathways in bromeliads represents an important adaptation enabling them to exploit nutrient-poor habitats. Nonetheless, as has been shown for several other vascular plants, multiple partners are involved in nutrient acquisition indicating that there have been convergent adaptations to nutrient scarcity. Finally, we point out some gaps in the current knowledge of bromeliad nutrition that offer fascinating research opportunities. © The Author 2015. Published by Oxford University Press on behalf of the Institute of Botany, Chinese Academy of Sciences and the Botanical Society of China. |
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CNRS, EcoLab, 118 Route de Narbonne, Toulouse, France |
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Export Date: 28 June 2016 |
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no |
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EcoFoG @ webmaster @ |
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683 |
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| Author |
Aili, S.R.; Touchard, A.; Koh, J.M.S.; Dejean, A.; Orivel, J.; Padula, M.P.; Escoubas, P.; Nicholson, G.M. |
| Title |
Comparisons of Protein and Peptide Complexity in Poneroid and Formicoid Ant Venoms |
Type |
Journal Article |
| Year |
2016 |
Publication |
Journal of Proteome Research |
Abbreviated Journal |
Journal of Proteome Research |
| Volume |
15 |
Issue |
9 |
Pages |
3039-3054 |
| Keywords |
ant venom; Hymenoptera; Lc-Maldi-Tof Ms; mass spectrometry; nanoLC-ESI-QTOF MS/MS; peptidome; proteomic analysis; toxin |
| Abstract |
Animal venom peptides are currently being developed as novel drugs and bioinsecticides. Because ants use venoms for defense and predation, venomous ants represent an untapped source of potential bioactive toxins. This study compared the protein and peptide components of the poneroid ants Neoponera commutata, Neoponera apicalis, and Odontomachus hastatus and the formicoid ants Ectatomma tuberculatum, Ectatomma brunneum, and Myrmecia gulosa. 1D and 2D PAGE revealed venom proteins in the mass range <10 to >250 kDa. NanoLC-ESI-QTOF MS/MS analysis of tryptic peptides revealed the presence of common venom proteins and also many undescribed proteins. RP-HPLC separation followed by MALDI-TOF MS of the venom peptides also revealed considerable heterogeneity. It was found that the venoms contained between 144 and 1032 peptides with 5-95% of peptides in the ranges 1-4 and 1-8 kDa for poneroid and formicoid ants, respectively. By employing the reducing MALDI matrix 1,5-diaminonapthalene, up to 28 disulfide-bonded peptides were also identified in each of the venoms. In particular, the mass range of peptides from poneroid ants is lower than peptides from other venoms, indicating possible novel structures and pharmacologies. These results indicate that ant venoms represent an enormous, untapped source of novel therapeutic and bioinsecticide leads. © 2016 American Chemical Society. |
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VenomeTech, 473 Route des Dolines, Valbonne, France |
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Export Date: 15 September 2016 |
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no |
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EcoFoG @ webmaster @ |
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695 |
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Aili, S.R.; Touchard, A.; Petitclerc, F.; Dejean, A.; Orivel, J.; Padula, M.P.; Escoubas, P.; Nicholson, G.M. |
| Title |
Combined Peptidomic and Proteomic Analysis of Electrically Stimulated and Manually Dissected Venom from the South American Bullet Ant Paraponera clavata |
Type |
Journal Article |
| Year |
2017 |
Publication |
Journal of Proteome Research |
Abbreviated Journal |
J. Proteome Res. |
| Volume |
16 |
Issue |
3 |
Pages |
1339-1351 |
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Ants have evolved venoms rich in peptides and proteins used for predation, defense, and communication. However, they remain extremely understudied due to the minimal amount of venom secreted by each ant. The present study investigated the differences in the proteome and peptidome of the venom from the bullet ant, Paraponera clavata. Venom samples were collected from a single colony either by manual venom gland dissection or by electrical stimulation and were compared using proteomic methods. Venom proteins were separated by 2D-PAGE and identified by nanoLC-ESI-QTOF MS/MS. Venom peptides were initially separated using C18 reversed-phase high-performance liquid chromatography, then analyzed by MALDI-TOF MS. The proteomic analysis revealed numerous proteins that could be assigned a biological function (total 94), mainly as toxins, or roles in cell regulation and transport. This investigation found that ca. 73% of the proteins were common to venoms collected by the two methods. The peptidomic analysis revealed a large number of peptides (total 309) but with <20% shared by the two collection methods. There was also a marked difference between venoms obtained by venom gland dissection from different ant colonies. These findings demonstrate the rich composition and variability of P. clavata venom. |
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American Chemical Society |
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1535-3893 |
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no |
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EcoFoG @ webmaster @ |
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746 |
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Touchard, A.; Aili, S.R.; Téné, N.; Barassé, V.; Klopp, C.; Dejean, A.; Kini, R.M.; Mrinalini; Coquet, L.; Jouenne, T.; Lefranc, B.; Leprince, J.; Escoubas, P.; Nicholson, G.M.; Treilhou, M.; Bonnafé, E. |
| Title |
Venom Peptide Repertoire of the European Myrmicine Ant Manica rubida: Identification of Insecticidal Toxins |
Type |
Journal Article |
| Year |
2020 |
Publication |
Journal of proteome research |
Abbreviated Journal |
J. Proteome Res. |
| Volume |
19 |
Issue |
4 |
Pages |
1800-1811 |
| Keywords |
glycosylated toxin; peptidome; polycationic α-helix; predation; pyroglutamate; reversible neurotoxicity |
| Abstract |
Using an integrated transcriptomic and proteomic approach, we characterized the venom peptidome of the European red ant, Manica rubida. We identified 13 “myrmicitoxins” that share sequence similarities with previously identified ant venom peptides, one of them being identified as an EGF-like toxin likely resulting from a threonine residue modified by O-fucosylation. Furthermore, we conducted insecticidal assays of reversed-phase HPLC venom fractions on the blowfly Lucilia caesar, permitting us to identify six myrmicitoxins (i.e., U3-, U10-, U13-, U20-MYRTX-Mri1a, U10-MYRTX-Mri1b, and U10-MYRTX-Mri1c) with an insecticidal activity. Chemically synthesized U10-MYRTX-Mri1a, -Mri1b, -Mri1c, and U20-MYRTX-Mri1a irreversibly paralyzed blowflies at the highest doses tested (30-125 nmol·g-1). U13-MYRTX-Mri1a, the most potent neurotoxic peptide at 1 h, had reversible effects after 24 h (150 nmol·g-1). Finally, U3-MYRTX-Mri1a has no insecticidal activity, even at up to 55 nmol·g-1. Thus, M. rubida employs a paralytic venom rich in linear insecticidal peptides, which likely act by disrupting cell membranes. |
| Address |
VenomeTech, 473 Route des Dolines – Villa 3, Valbonne, 06560, France |
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NLM (Medline) |
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15353907 (Issn) |
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Export Date: 20 April 2020 |
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no |
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EcoFoG @ webmaster @ |
Serial |
927 |
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| Author |
Touchard, A.; Dauvois, M.; Arguel, M.-J.; Petitclerc, F.; Leblanc, M.; Dejean, A.; Orivel, J.; Nicholson, G.M.; Escoubas, P. |
| Title |
Elucidation of the unexplored biodiversity of ant venom peptidomes via MALDI-TOF mass spectrometry and its application for chemotaxonomy |
Type |
Journal Article |
| Year |
2014 |
Publication |
Journal of Proteomics |
Abbreviated Journal |
J. Proteomics |
| Volume |
105 |
Issue |
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Pages |
217-231 |
| Keywords |
Ant venom; Chemotaxonomy; Maldi-Tof Ms; Peptide; Peptidome; Ponerinae; ant venom; cytochrome c oxidase; ant; article; biodiversity; chemotaxonomy; correlational study; DNA sequence; French Guiana; Hymenoptera; matrix assisted laser desorption ionization time of flight mass spectrometry; mitochondrial gene; nonhuman; Odontomachus biumbonatus; Odontomachus haematodus; Odontomachus hastatus; Odontomachus mayi; Odontomachus scalptus; Pachcondyla apicalis; Pachcondyla arhuaca; Pachcondyla commutata; Pachcondyla constricta; Pachcondyla crassinola; Pachcondyla goeldii; Pachcondyla inversa; Pachcondyla marginata; Pachcondyla procidua; Pachcondyla stigma; Pachcondyla verenae; Pachcondyla villosa; peptidomics; phylogeny; priority journal; Animalia; Formicidae; Hymenoptera; Odontomachus; Pachycondyla; Pachycondyla apicalis; Pachycondyla stigma; Ponerinae |
| Abstract |
The rise of integrative taxonomy, a multi-criteria approach used in characterizing species, fosters the development of new tools facilitating species delimitation. Mass spectrometric (MS) analysis of venom peptides from venomous animals has previously been demonstrated to be a valid method for identifying species. Here we aimed to develop a rapid chemotaxonomic tool for identifying ants based on venom peptide mass fingerprinting. The study focused on the biodiversity of ponerine ants (Hymenoptera: Formicidae: Ponerinae) in French Guiana. Initial experiments optimized the use of automated matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF MS) to determine variations in the mass profiles of ant venoms using several MALDI matrices and additives. Data were then analyzed via a hierarchical cluster analysis to classify the venoms of 17 ant species. In addition, phylogenetic relationships were assessed and were highly correlated with methods using DNA sequencing of the mitochondrial gene cytochrome c oxidase subunit 1. By combining a molecular genetics approach with this chemotaxonomic approach, we were able to improve the accuracy of the taxonomic findings to reveal cryptic ant species within species complexes. This chemotaxonomic tool can therefore contribute to more rapid species identification and more accurate taxonomies. Biological significance: This is the first extensive study concerning the peptide analysis of the venom of both Pachycondyla and Odontomachus ants. We studied the venoms of 17 ant species from French Guiana that permitted us to fine-tune the venom analysis of ponerine ants via MALDI-TOF mass spectrometry. We explored the peptidomes of crude ant venom and demonstrated that venom peptides can be used in the identification of ant species. In addition, the application of this novel chemotaxonomic method combined with a parallel genetic approach using COI sequencing permitted us to reveal the presence of cryptic ants within both the Pachycondyla apicalis and Pachycondyla stigma species complexes. This adds a new dimension to the search for means of exploiting the enormous biodiversity of venomous ants as a source for novel therapeutic drugs or biopesticides. This article is part of a Special Issue entitled: Proteomics of non-model organisms. © 2014 Elsevier B.V. |
| Address |
Neurotoxin Research Group, School of Medical and Molecular Biosciences, University of Technology, Sydney, NSW, Australia |
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Elsevier |
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18767737 (Issn) |
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Cited By (since 1996):1; Export Date: 30 July 2014; Correspondence Address: Touchard, A.; UMR-EcoFoG, Campus Agronomique, BP 316, 97379 Kourou Cedex, France; email: axel.touchard@ecofog.gf; Chemicals/CAS: cytochrome c oxidase, 72841-18-0, 9001-16-5 |
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EcoFoG @ webmaster @ |
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555 |
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Fromin, N.; Porte, B.; Lensi, R.; Hamelin, J.; Domenach, A.-M.; Buatois, B.; Roggy, J.-C. |
| Title |
Spatial variability of the functional stability of microbial respiration process: A microcosm study using tropical forest soil |
Type |
Journal Article |
| Year |
2012 |
Publication |
Journal of Soils and Sediments |
Abbreviated Journal |
J. Soils Sed. |
| Volume |
12 |
Issue |
7 |
Pages |
1030-1039 |
| Keywords |
Disturbance; Diversity-stability relationship; Microbial diversity; Substrate-induced respiration |
| Abstract |
Purpose: Understanding the ability of ecosystem processes to resist to and to recover from disturbances is critical to sustainable land use. However, the spatial variability of the stability has rarely been addressed. Here, we investigated the functional stability of a soil microbial process for 24 soils collected from adjacent locations from a 0. 3 ha tropical rainforest plot in Paracou, French Guiana. Materials and methods: The 24 locations were characterized regarding soil chemical and biological (microbial diversity) parameters and forest structure. The corresponding soils were submitted to an experimental transient heat disturbance during a microcosm experiment. The response of the respiration process was followed using substrate-induced respiration (SIR). Results and discussion: The response of soil SIR to heat disturbance varied widely between samples. The variability of the SIR response increased just after the disturbance, and a global rather homogeneous decrease in SIR rates was observed 15 and 30 days after. The stability of SIR in response to heat disturbance could not be related to either the genetic or the metabolic diversity of the microbial community. The initial level of SIR before the disturbance was the soil variable that best correlated with the impact of the disturbance: the soil locations with the highest initial SIR rates were the most affected 15 and 30 days after the heat disturbance. Conclusions: Such a heterogeneous response suggests that the response of soil processes to a disturbance will be difficult to assess from only local-scale analyses and highlights the need for spatial explicitness in understanding biogeochemical processes. © 2012 Springer-Verlag. |
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UMR EcoFoG, BP 709, 97387 Kourou, French Guiana |
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14390108 (Issn) |
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Export Date: 30 July 2012; Source: Scopus; doi: 10.1007/s11368-012-0528-7; Language of Original Document: English; Correspondence Address: Fromin, N.; CEFE, CNRS UMR 5175, 1919 Route de Mende, 34293 Montpellier cedex 5, France; email: nathalie.fromin@cefe.cnrs.fr |
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EcoFoG @ webmaster @ |
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415 |
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Conte, D.E.; Aboulaich, A.; Robert, F.; Olivier-Fourcade, J.; Jumas, J.C.; Jordy, C.; Willmann, P. |
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Sn-x[BPO4](1-x) composites as negative electrodes for lithium ion cells: Comparison with amorphous SnB0.6P0.4O2.9 and effect of composition |
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Journal Article |
| Year |
2010 |
Publication |
Journal of Solid State Chemistry |
Abbreviated Journal |
J. Solid State Chem. |
| Volume |
183 |
Issue |
1 |
Pages |
65-75 |
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Sn-based composites; Lithium-ion batteries; Negative electrodes; Mossbauer spectroscopy; LixSn alloys |
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A comparative study of two Sn-based composite materials as negative electrode for Li-ion accumulators is presented. The former SnB0.6P0.4O2.9 obtained by in-situ dispersion of SnO in an oxide matrix is shown to be an amorphous tin composite oxide (ATCO). The latter Sn-0.72[BPO4](0.28) obtained by ex-situ dispersion of Sri in a borophosphate matrix consists of Sri particles embedded in a crystalline BPO4 matrix. The electrochemical responses of ATCO and Sn-0.72.[BPO4](0.28) composite in galvanostatic mode show reversible capacities of about 450 and 530 mAhg(-1), respectively, with different irreversible capacities (60% and 29%). Analysis of these composite materials by Sn-119 Mossbauer spectroscopy in transmission (TMS) and emission (CEMS) modes confirms that ATCO is an amorphous Sn-II composite oxide and shows that in the case of Sn-0.72[BPO4](0.28), the Surface of the tin clusters is mainly formed by Sn-II in an amorphous interface whereas the bulk of the clusters is mainly formed by Sn-0. The determination of the recoilless free fractions f (Lamb-Mossbauer factors) leads to the effective fraction of both Sn-0 and Sn-II species in such composites. The influence of chemical composition and especially of the surface-to-bulk tin species ratio oil the electrochemical behaviour has been analysed for several Sn-x[BPO4](1-x) composite materials (0.17 < x < 0.91). The cell using the compound Sn-0.72[BPO4](0.28) as active material exhibits interesting electrochemical performances (reversible capacity of 500 mAh g(-1) at C/5 rate). (C) 2009 Elsevier Inc. All rights reserved. |
| Address |
[Conte, Donato Ercole; Aboulaich, Abdelmaula; Robert, Florent; Olivier-Fourcade, Josette; Jumas, Jean-Claude] Univ Montpellier 2, CNRS, UMR 5253,Inst Charles Gerhardt, Equipe Agregats Interfaces & Mat Energie, F-34095 Montpellier, France, Email: iguanasornione@libero.it |
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ACADEMIC PRESS INC ELSEVIER SCIENCE |
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0022-4596 |
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ISI:000273834600010 |
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EcoFoG @ eric.marcon @ |
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83 |
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Marcon, E.; Herault, B. |
| Title |
entropart: An R package to measure and partition diversity |
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Journal Article |
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2015 |
Publication |
Journal of Statistical Software |
Abbreviated Journal |
Journal of Statistical Software |
| Volume |
67 |
Issue |
8 |
Pages |
1-26 |
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Biodiversity; Entropy; Partitioning |
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entropart is a package for R designed to estimate diversity based on HCDT entropy or similarity-based entropy. It allows calculating species-neutral, phylogenetic and functional entropy and diversity, partitioning them and correcting them for estimation bias. © 2015, American Statistical Association. All rights reserved. |
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Cirad, Campus agronomique, BP 316, Kourou, French Guiana |
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Export Date: 22 October 2015 |
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EcoFoG @ webmaster @ |
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633 |
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Marcon, E.; Traissac, S.; Puech, F.; Lang, G. |
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Tools to characterize point patterns: dbmss for R |
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Journal Article |
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2015 |
Publication |
Journal of Statistical Software |
Abbreviated Journal |
Journal of Statistical Software |
| Volume |
67 |
Issue |
Codesnippet3 |
Pages |
1-15 |
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Point patterns; R; Spatial structure |
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The dbmss package for R provides an easy-to-use toolbox to characterize the spatial structure of point patterns. Our contribution presents the state of the art of distance-based methods employed in economic geography and which are also used in ecology. Topographic functions such as Ripley’s K, absolute functions such as Duranton and Overman’s Kd and relative functions such as Marcon and Puech’s M are implemented. Their confidence envelopes (including global ones) and tests against counterfactuals are included in the package. © 2015, American Statistical Association. All rights reserved. |
| Address |
AgroParisTech, INRA, UMR 518 Math. Info. Appli., 16 rue Claude Bernard, Paris, France |
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Export Date: 22 October 2015 |
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EcoFoG @ webmaster @ |
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635 |
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