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Author |
Blanc, L.; Echard, M.; Herault, B.; Bonal, D.; Marcon, E.; Chave, J.; Baraloto, C. |
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Title |
Dynamics of aboveground carbon stocks in a selectively logged tropical forest |
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Journal Article |
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Year |
2009 |
Publication |
Ecological Applications |
Abbreviated Journal |
Ecol. Appl. |
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Volume |
19 |
Issue |
6 |
Pages |
1397-1404 |
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Keywords |
aboveground biomass; carbon sequestration; deforestation; French Guiana; global change; timber stand improvement; tropical forests |
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Abstract |
The expansion of selective logging in tropical forests may be an important source of global carbon emissions. However, the effects of logging practices on the carbon cycle have never been quantified over long periods of time. We followed the fate of more than 60 000 tropical trees over 23 years to assess changes in aboveground carbon stocks in 48 1.56-ha plots in French Guiana that represent a gradient of timber harvest intensities, with and without intensive timber stand improvement (TSI) treatments to stimulate timber tree growth. Conventional selective logging led to emissions equivalent to more than a third of aboveground carbon stocks in plots without TSI (85 Mg C/ha), while plots with TSI lost more than one-half of aboveground carbon stocks (142 Mg C/ha). Within 20 years of logging, plots without TSI sequestered aboveground carbon equivalent to more than 80% of aboveground carbon lost to logging (-70.7 Mg C/ha), and our simulations predicted an equilibrium aboveground carbon balance within 45 years of logging. In contrast, plots with intensive TSI are predicted to require more than 100 years to sequester aboveground carbon lost to emissions. These results indicate that in some tropical forests aboveground carbon storage can be recovered within half a century after conventional logging at moderate harvest intensities. |
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[Bonal, Damien; Baraloto, Christopher] INRA, UMR Ecol Forets Guyane, Kourou 97379, French Guiana, Email: chris.baraloto@ecofog.gf |
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ECOLOGICAL SOC AMER |
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1051-0761 |
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ISI:000269075200003 |
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no |
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Call Number |
EcoFoG @ eric.marcon @ |
Serial |
105 |
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Author |
Campillo, F.; Rakotozafy, R.; Rossi, V. |
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Title |
Parallel and interacting Markov chain Monte Carlo algorithm |
Type |
Journal Article |
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Year |
2009 |
Publication |
Mathematics and Computers in Simulation |
Abbreviated Journal |
Math. Comput. Simul. |
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Volume |
79 |
Issue |
12 |
Pages |
3424-3433 |
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Keywords |
Markov chain Monte Carlo method; Interacting chains; Hidden Markov model |
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Abstract |
In many situations it is important to be able to propose N independent realizations of a given distribution law. We propose a strategy for making N parallel Monte Carlo Markov chains (MCMC) interact in order to get an approximation of an independent N-sample of a given target law. In this method each individual chain proposes candidates for all other chains. We prove that the set of interacting chains is itself a MCMC method for the product of N target measures. Compared to independent parallel chains this method is more time consuming. but we show through examples that it possesses many advantages. This approach is applied to a biomass evolution model. (C) 2009 IMACS. Published by Elsevier B.V. All rights reserved. |
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[Rossi, Vivien] CIRAD, Res Unit, Montpellier, France, Email: Fabien.Campillo@inria.fr |
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ELSEVIER SCIENCE BV |
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0378-4754 |
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ISI:000269289100006 |
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EcoFoG @ eric.marcon @ |
Serial |
197 |
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Seymour, R.S.; White, C.R.; Gibernau, M. |
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Title |
Endothermy of dynastine scarab beetles (Cyclocephala colasi) associated with pollination biology of a thermogenic arum lily (Philodendron solimoesense) |
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Journal Article |
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Year |
2009 |
Publication |
Journal of Experimental Biology |
Abbreviated Journal |
J. Exp. Biol. |
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Volume |
212 |
Issue |
18 |
Pages |
2960-2968 |
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Keywords |
beetle; endothermy; pollination biology; Cyclocephala; Philodendron |
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Abstract |
Cyclocephala colasi beetles are facultative endotherms that spend most of their adult lives inside the inflorescences of Philodendron solimoesense, where ambient temperature (T-a) averages about 28 degrees C due to floral thermogenesis. Measurements of respiration within a range of T-a showed that active beetles became spontaneously endothermic at T-a below 28 degrees C but were rarely endothermic above it. There was no evidence of endothermy within the inflorescences, indicating that activities in the floral chamber can occur without the high energy expense of endothermy. Bouts of endothermy occurred at lower T-a in respirometer chambers mainly in the evening, when the insects normally fly from one inflorescence to another, and during the night, when they normally eat and mate within the inflorescence. Patterns of endothermy in individual episodes were studied in non-flying beetles with respirometry and infrared thermal imaging. Heat was generated in the thorax by oscillatory waves of respiration that were coupled with thoracic temperature (T-th) increases. Stationary beetles could regulate T-th at about 33 degrees C independently of T-a between 16 and 29 degrees C. At T-a=20 degrees C, this represents a 116-fold increase in metabolic rate over resting, ectothermic values. Endothermy was clearly a requirement for flight, and beetles departing inflorescences warmed to about 30 degrees C before take-off. During flight, T-th was dependent on T-a, decreasing from 37 to 28 degrees C at T-a of 37 to 20 degrees C, respectively. The lowest T-a at which flight could occur was about 20 degrees C. Thermal conductance of stationary, endothermic beetles increased at higher metabolic rates, probably because of increased ventilatory heat loss. |
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[Seymour, Roger S.] Univ Adelaide, Sch Earth & Environm Sci, Adelaide, SA 5005, Australia, Email: roger.seymour@adelaide.edu.au |
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COMPANY OF BIOLOGISTS LTD |
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0022-0949 |
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ISI:000269383500014 |
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no |
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EcoFoG @ eric.marcon @ |
Serial |
198 |
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Author |
Gloor, M.; Phillips, O.L.; Lloyd, J.J.; Lewis, S.L.; Malhi, Y.; Baker, T.R.; Lopez-Gonzalez, G.; Peacock, J.; Almeida, S.; de Oliveira, A.C.A.; Alvarez, E.; Amaral, I.; Arroyo, L.; Aymard, G.; Banki, O.; Blanc, L.; Bonal, D.; Brando, P.; Chao, K.J.; Chave, J.; Davila, N.; Erwin, T.; Silva, J.; Di Fiore, A.; Feldpausch, T.R.; Freitas, A.; Herrera, R.; Higuchi, N.; Honorio, E.; Jimenez, E.; Killeen, T.; Laurance, W.; Mendoza, C.; Monteagudo, A.; Andrade, A.; Neill, D.; Nepstad, D.; Vargas, P.N.; Penuela, M.C.; Cruz, A.P.; Prieto, A.; Pitman, N.; Quesada, C.; Salomao, R.; Silveira, M.; Schwarz, M.; Stropp, J.; Ramirez, F.; Ramirez, H.; Rudas, A.; ter Steege, H.; Silva, N.; Torres, A.; Terborgh, J.; Vasquez, R.; van der Heijden, G. |
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Title |
Does the disturbance hypothesis explain the biomass increase in basin-wide Amazon forest plot data? |
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Journal Article |
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Year |
2009 |
Publication |
Global Change Biology |
Abbreviated Journal |
Glob. Change Biol. |
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Volume |
15 |
Issue |
10 |
Pages |
2418-2430 |
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Keywords |
Amazon rainforest; carbon sink; disturbance; mortality; power law |
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Abstract |
Positive aboveground biomass trends have been reported from old-growth forests across the Amazon basin and hypothesized to reflect a large-scale response to exterior forcing. The result could, however, be an artefact due to a sampling bias induced by the nature of forest growth dynamics. Here, we characterize statistically the disturbance process in Amazon old-growth forests as recorded in 135 forest plots of the RAINFOR network up to 2006, and other independent research programmes, and explore the consequences of sampling artefacts using a data-based stochastic simulator. Over the observed range of annual aboveground biomass losses, standard statistical tests show that the distribution of biomass losses through mortality follow an exponential or near-identical Weibull probability distribution and not a power law as assumed by others. The simulator was parameterized using both an exponential disturbance probability distribution as well as a mixed exponential-power law distribution to account for potential large-scale blowdown events. In both cases, sampling biases turn out to be too small to explain the gains detected by the extended RAINFOR plot network. This result lends further support to the notion that currently observed biomass gains for intact forests across the Amazon are actually occurring over large scales at the current time, presumably as a response to climate change. |
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[Gloor, M.; Phillips, O. L.; Lloyd, J. J.; Lewis, S. L.; Baker, T. R.; Lopez-Gonzalez, G.; Peacock, J.; Feldpausch, T. R.] Univ Leeds, Sch Geog, Leeds LS2 9JT, W Yorkshire, England, Email: eugloor@googlemail.com |
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WILEY-BLACKWELL PUBLISHING, INC |
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1354-1013 |
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Notes |
ISI:000269577800006 |
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no |
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Call Number |
EcoFoG @ eric.marcon @ |
Serial |
196 |
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Author |
Seymour, R.S.; Gibernau, M.; Pirintsos, S.A. |
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Title |
Thermogenesis of three species of Arum from Crete |
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Journal Article |
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Year |
2009 |
Publication |
Plant Cell and Environment |
Abbreviated Journal |
Plant Cell Environ. |
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Volume |
32 |
Issue |
10 |
Pages |
1467-1476 |
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Keywords |
Araceae; arum lily; inflorescence; pollination; temperature regulation |
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Abstract |
Inflorescences of arum lilies have a three-part spadix with a scent-producing, sterile appendix above two bands of fertile male and female florets. The appendix and male florets are thermogenic, but with different temporal patterns. Heat-production was measured in Arum concinnatum, A. creticum and A. idaeum. The male florets of A. concinnatum showed a 3 d continuous episode of thermogenesis with three waves, and the appendix warmed in a single, 6 h episode. Maximum fresh-mass-specific CO2 production rate was 0.17 μmol s(-1) g(-1) to achieve a 10.9 degrees C temperature elevation by the appendix, and 0.92 μmol s(-1) g(-1) to achieve a 4.8 degrees C elevation by male florets. Reversible, physiological temperature regulation was not evident in either tissue. Respiration increased with tissue temperatures with Q(10) values of 1.8-3.9, rather than less than 1.0 as occurs in thermoregulatory flowers. Experimental step changes in temperature of appendix and male floret tissues also failed to show thermoregulatory responses. The patterns of thermogenesis therefore appear to be fixed by the temporal sequence of blooming. Thermogenesis in the alpine species, A. creticum and A. idaeum, was significantly lower than in the lowland A. concinnatum, possibly related to difficulty in raising floral temperature in their cold and windy habitat. |
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[Seymour, Roger S.] Univ Adelaide, Adelaide, SA 5005, Australia, Email: roger.seymour@adelaide.edu.au |
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WILEY-BLACKWELL PUBLISHING, INC |
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0140-7791 |
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Notes |
ISI:000269592300016 |
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no |
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Call Number |
EcoFoG @ eric.marcon @ |
Serial |
195 |
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Author |
Roux, O.; Martin, J.M.; Ghomsi, N.T.; Dejean, A. |
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Title |
A Non-lethal Water-based Removal-reapplication Technique for Behavioral Analysis of Cuticular Compounds of Ants |
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Journal Article |
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Year |
2009 |
Publication |
Journal of Chemical Ecology |
Abbreviated Journal |
J. Chem. Ecol. |
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Volume |
35 |
Issue |
8 |
Pages |
904-912 |
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Keywords |
Ants; Behavioral assay; Behavioral ecology; Camponotus blandus; Chemical composition; Chemical ecology; Cuticular hydrocarbons; Gas chromatography-mass spectrometry; Live dummies; Solenopsis saevissima; Methods |
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Abstract |
Interspecific relationships among insects are often mediated by chemical cues, including non-volatile cuticular compounds. Most of these compounds are hydrocarbons that necessitate the use of solvents for their extraction, identification, and manipulation during behavioral assays. The toxicity of these solvents often precludes the removal and reapplication of hydrocarbons from and to live insects. As a consequence, dummies often are used in behavioral assays, but their passivity can bias the behavior of the responding insects. To overcome these limitations, we propose a method where cuticular compounds are extracted from live ants by placing them into glass vials half-filled with tepid water (ca. 34A degrees C) and vigorously shaking the vials to form an emulsion whose supernatant can be analyzed and/or reapplied to other ants. We demonstrate that cuticular compounds can be extracted from workers of the red fire ant, Solenopsis saevissima, and reapplied to the cuticle of workers from a sympatric species, Camponotus blandus (both Hymenoptera: Formicidae), while keeping the ants alive. Gas chromatographic-mass spectrometric analysis and behavioral assays were used to confirm the successful transfer of the behaviorally active compounds. |
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[Roux, Olivier; Martin, Jean-Michel; Dejean, Alain] Ecol Forets Guyane, CNRS, UMR 8172, F-97379 Kourou, France, Email: oroux@cict.fr |
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SPRINGER |
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0098-0331 |
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ISI:000269954400006 |
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no |
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EcoFoG @ eric.marcon @ |
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104 |
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Cachet, N.; Hoakwie, F.; Bertani, S.; Bourdy, G.; Deharo, E.; Stien, D.; Houel, E.; Gornitzka, H.; Fillaux, J.; Chevalley, S.; Valentin, A.; Jullian, V. |
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Title |
Antimalarial Activity of Simalikalactone E, a New Quassinoid from Quassia amara L. (Simaroubaceae) |
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Journal Article |
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Year |
2009 |
Publication |
Antimicrobial Agents and Chemotherapy |
Abbreviated Journal |
Antimicrob. Agents Chemother. |
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Volume |
53 |
Issue |
10 |
Pages |
4393-4398 |
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We report the isolation and identification of a new quassinoid named simalikalactone E (SkE), extracted from a widely used Amazonian antimalarial remedy made out of Quassia amara L. (Simaroubaceae) leaves. This new molecule inhibited the growth of Plasmodium falciparum cultured in vitro by 50%, in the concentration range from 24 to 68 nM, independently of the strain sensitivity to chloroquine. We also showed that this compound was able to decrease gametocytemia with a 50% inhibitory concentration sevenfold lower than that of primaquine. SkE was found to be less toxic than simalikalactone D (SkD), another antimalarial quassinoid from Q. amara, and its cytotoxicity on mammalian cells was dependent on the cell line, displaying a good selectivity index when tested on nontumorogenic cells. In vivo, SkE inhibited murine malaria growth of Plasmodium vinckei petteri by 50% at 1 and 0.5 mg/kg of body weight/day, by the oral or intraperitoneal routes, respectively. The contribution of quassinoids as a source of antimalarial molecules needs therefore to be reconsidered. |
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[Cachet, N.; Hoakwie, F.; Bourdy, G.; Deharo, E.; Chevalley, S.; Valentin, A.; Jullian, V.] Univ Toulouse, UPS, Lab Pharmacochim Subst Nat & Pharmacophores Redox, UMR 152, F-31062 Toulouse 9, France, Email: jullian@cict.fr |
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AMER SOC MICROBIOLOGY |
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0066-4804 |
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ISI:000270020600047 |
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EcoFoG @ eric.marcon @ |
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103 |
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Author |
Campillo, F.; Rossi, V. |
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Title |
Convolution Particle Filter for Parameter Estimation in General State-Space Models |
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Journal Article |
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Year |
2009 |
Publication |
IEEE Transactions on Aerospace and Electronic Systems |
Abbreviated Journal |
IEEE Trans. Aerosp. Electron. Syst. |
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Volume |
45 |
Issue |
3 |
Pages |
1063-1072 |
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The state-space modeling of partially observed dynamical systems generally requires estimates of unknown parameters. The dynamic state vector together with the static parameter vector can be considered as an augmented state vector. Classical filtering methods, such as the extended Kalman filter (EKF) and the bootstrap particle filter (PF), fail to estimate the augmented state vector. For these classical filters to handle the augmented state vector, a dynamic noise term should be artificially added to the parameter components or to the deterministic component of the dynamical system. However, this approach degrades the estimation performance of the filters. We propose a variant of the PF based on convolution kernel approximation techniques. This approach is tested on a simulated case study. |
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IEEE-INST ELECTRICAL ELECTRONICS ENGINEERS INC |
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0018-9251 |
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ISI:000270225500017 |
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EcoFoG @ eric.marcon @ |
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194 |
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van Gorsel, E.; Delpierre, N.; Leuning, R.; Black, A.; Munger, J.W.; Wofsy, S.; Aubinet, M.; Feigenwinter, C.; Beringer, J.; Bonal, D.; Chen, B.Z.; Chen, J.Q.; Clement, R.; Davis, K.J.; Desai, A.R.; Dragoni, D.; Etzold, S.; Grunwald, T.; Gu, L.H.; Heinesch, B.; Hutyra, L.R.; Jans, W.W.P.; Kutsch, W.; Law, B.E.; Leclerc, M.Y.; Mammarella, I.; Montagnani, L.; Noormets, A.; Rebmann, C.; Wharton, S. |
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Title |
Estimating nocturnal ecosystem respiration from the vertical turbulent flux and change in storage of CO2 |
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Journal Article |
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Year |
2009 |
Publication |
Agricultural and Forest Meteorology |
Abbreviated Journal |
Agric. For. Meteorol. |
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Volume |
149 |
Issue |
11 |
Pages |
1919-1930 |
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Keywords |
Ecosystem respiration; Micrometeorology; Advection; u-star correction; Eddy covariance; Chamber; Process-based modelling |
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Abstract |
Micrometeorological measurements of night time ecosystem respiration can be systematically biased when stable atmospheric conditions lead to drainage flows associated with decoupling of air flow above and within plant canopies. The associated horizontal and vertical advective fluxes cannot be measured using instrumentation on the single towers typically used at micrometeorological sites. A common approach to minimize bias is to use a threshold in friction velocity, u*, to exclude periods when advection is assumed to be important, but this is problematic in situations when in-canopy flows are decoupled from the flow above. Using data from 25 flux stations in a wide variety of forest ecosystems globally, we examine the generality of a novel approach to estimating nocturnal respiration developed by van Gorsel et al. (van Gorsel, E., Leuning, R., Cleugh, H.A., Keith, H., Suni, T., 2007. Nocturnal carbon efflux: reconciliation of eddy covariance and chamber measurements using an alternative to the u*-threshold filtering technique. Tellus 59B, 397-403, Tellus, 59B, 307-403). The approach is based on the assumption that advection is small relative to the vertical turbulent flux (F-C) and change in storage (F-S) of CO2 in the few hours after sundown. The sum of F-C and F-S reach a maximum during this period which is used to derive a temperature response function for ecosystem respiration. Measured hourly soil temperatures are then used with this function to estimate respiration R-Rmax. The new approach yielded excellent agreement with (1) independent measurements using respiration chambers, (2) with estimates using ecosystem light-response curves of F-c + F-s extrapolated to zero light, R-LRC, and (3) with a detailed process-based forest ecosystem model, R-cast. At most sites respiration rates estimated using the u*-filter, R-ust, were smaller than R-Rmax, and R-LRC. Agreement of our approach with independent measurements indicates that R-Rmax, provides an excellent estimate of nighttime ecosystem respiration. (C) 2009 Elsevier B.V. All rights reserved. |
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[van Gorsel, Eva; Leuning, Ray] CSIRO Marine & Atmospher Res, Canberra, ACT 2061, Australia, Email: Eva.vangorsel@csiro.au |
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ELSEVIER SCIENCE BV |
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0168-1923 |
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ISI:000270640300013 |
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EcoFoG @ eric.marcon @ |
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102 |
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Author |
Fisher, J.B.; Malhi, Y.; Bonal, D.; Da Rocha, H.R.; De Araujo, A.C.; Gamo, M.; Goulden, M.L.; Hirano, T.; Huete, A.R.; Kondo, H.; Kumagai, T.; Loescher, H.W.; Miller, S.; Nobre, A.D.; Nouvellon, Y.; Oberbauer, S.F.; Panuthai, S.; Roupsard, O.; Saleska, S.; Tanaka, K.; Tanaka, N.; Tu, K.P.; Von Randow, C. |
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Title |
The land-atmosphere water flux in the tropics |
Type |
Journal Article |
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Year |
2009 |
Publication |
Global Change Biology |
Abbreviated Journal |
Glob. Change Biol. |
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Volume |
15 |
Issue |
11 |
Pages |
2694-2714 |
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Keywords |
Amazon; eddy covariance; evaporation; evapotranspiration; ISLSCP-II; LBA; model; remote sensing; tropical |
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Abstract |
Tropical vegetation is a major source of global land surface evapotranspiration, and can thus play a major role in global hydrological cycles and global atmospheric circulation. Accurate prediction of tropical evapotranspiration is critical to our understanding of these processes under changing climate. We examined the controls on evapotranspiration in tropical vegetation at 21 pan-tropical eddy covariance sites, conducted a comprehensive and systematic evaluation of 13 evapotranspiration models at these sites, and assessed the ability to scale up model estimates of evapotranspiration for the test region of Amazonia. Net radiation was the strongest determinant of evapotranspiration (mean evaporative fraction was 0.72) and explained 87% of the variance in monthly evapotranspiration across the sites. Vapor pressure deficit was the strongest residual predictor (14%), followed by normalized difference vegetation index (9%), precipitation (6%) and wind speed (4%). The radiation-based evapotranspiration models performed best overall for three reasons: (1) the vegetation was largely decoupled from atmospheric turbulent transfer (calculated from X decoupling factor), especially at the wetter sites; (2) the resistance-based models were hindered by difficulty in consistently characterizing canopy (and stomatal) resistance in the highly diverse vegetation; (3) the temperature-based models inadequately captured the variability in tropical evapotranspiration. We evaluated the potential to predict regional evapotranspiration for one test region: Amazonia. We estimated an Amazonia-wide evapotranspiration of 1370 mm yr(-1), but this value is dependent on assumptions about energy balance closure for the tropical eddy covariance sites; a lower value (1096 mm yr(-1)) is considered in discussion on the use of flux data to validate and interpolate models. |
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Address |
[Fisher, Joshua B.; Malhi, Yadvinder] Univ Oxford, Environm Change Inst, Sch Geog & Environm, Oxford OX1 3QY, England, Email: joshbfisher@gmail.com |
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Publisher |
WILEY-BLACKWELL PUBLISHING, INC |
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Series Volume |
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Edition |
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ISSN |
1354-1013 |
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Notes |
ISI:000270662000011 |
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no |
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Call Number |
EcoFoG @ eric.marcon @ |
Serial |
101 |
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